Phvul.005G105600.1

Transcript Overview
NamePhvul.005G105600.1
Unique NamePhvul.005G105600.1_Pv_G19833_v2.1
TypemRNA
OrganismPhaseolus vulgaris (Common bean)
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr05supercontigChr05:32541754..32542890 +Phaseolus vulgaris G19833 genome v2.1n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Phaseolus vulgaris G19833 genome v2.12019-09-17
InterProScan: Phaseolus vulgaris G19833 genome v2.12019-10-18
BLAST: Phaseolus vulgaris G19833 genome v2.1 vs. Swissprot2019-10-18
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
pvpvL109Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
pvpvR246Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
pspvL467Pisum sativum Cameor genome v1aPisum sativum
pvvuR481Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
pvvuR493Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
pvvuR509Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
crpvL063Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
capvL043Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
capvL064Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
crpvL526Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
ccpvL0141Cajanus cajan Asha genome v1.0Cajanus cajan
ccpvL0405Cajanus cajan Asha genome v1.0Cajanus cajan
anpvL0331Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anpvL0666Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anpvL0868Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anpvL1224Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anpvL1302Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
aspvL157Vigna angularis Jingnong 6 genome v1.1Vigna angularis
aspvL691Vigna angularis Jingnong 6 genome v1.1Vigna angularis
pvzwsR469Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
pvvfhR481Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
pvvfhR528Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
pvtifR478Vicia faba cv. Tiffany genome v1.0Vicia faba
pvtifR524Vicia faba cv. Tiffany genome v1.0Vicia faba
pvvuaR417Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
pvvuaR429Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
pvvuaR446Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
pvvssR535Vicia sativa cv. Studenica genome v1.0Vicia sativa
pvvssR566Vicia sativa cv. Studenica genome v1.0Vicia sativa
canpvL037Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
canpvL602Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
avjpvL090Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjpvL130Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjpvL669Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
carpvL053Cicer arietinum
carpvL598Cicer arietinum
ccapvL124Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccapvL482Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccapvL487Cajanus cajan cv. Asha genome v2.0Cajanus cajan
pvvumR516Vigna umbellata FF25 genome v1.0Vigna umbellata
pvvumR536Vigna umbellata FF25 genome v1.0Vigna umbellata
pvvumR537Vigna umbellata FF25 genome v1.0Vigna umbellata
pvvumR558Vigna umbellata FF25 genome v1.0Vigna umbellata
pvvvaR528Vicia villosa cv. AU Merit genome v1.0Vicia villosa
pvvvaR563Vicia villosa cv. AU Merit genome v1.0Vicia villosa
pvvasR523Vigna angularis cv. Shumari genome v1.a1Vigna angularis
pvvasR533Vigna angularis cv. Shumari genome v1.a1Vigna angularis
pvvasR535Vigna angularis cv. Shumari genome v1.a1Vigna angularis
pvvasR559Vigna angularis cv. Shumari genome v1.a1Vigna angularis
pvvstR524Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
pvvstR534Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
pvvstR536Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
pvvstR561Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
pvvunR444Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
pvvunR456Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata

Orthologs
Gene/TranscriptAssemblySpecies
Vigan.07G095600.01Vigna angularis cv. Shumari genome v1.a1Vigna angularis
Cc_v2.0_23978.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan
Vigst.07G072100.01Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
Ca_14091Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
Vigun05g216900.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
LR48_mrnaVigan05g150600Vigna angularis Jingnong 6 genome v1.1Vigna angularis
evm.model.Chr05.2082Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
Psat05G0749500-T1Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
Vigun05g216900.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
Cr_11525.1Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
rna-KK1_024791Cajanus cajan Asha genome v1.0Cajanus cajan
jg43875.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Cc_v2.0_10032.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan
Va05G044000.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
Vum_07G00771.1Vigna umbellata FF25 genome v1.0Vigna umbellata
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Phvul.005G105600Phvul.005G105600_Pv_G19833_v2.1Phaseolus vulgarisgene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Phvul.005G105600.1Phvul.005G105600.1_Pv_G19833_v2.1-proteinPhaseolus vulgarispolypeptide
Phvul.005G105600.1_Pv_G19833_v2.1Phvul.005G105600.1_Pv_G19833_v2.1Phaseolus vulgarispolypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Phvul.005G105600.1.v2.1.five_prime_UTR.1Phvul.005G105600.1.v2.1.five_prime_UTR.1_Pv_G19833_v2.1Phaseolus vulgarisfive_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Phvul.005G105600.1.v2.1.CDS.1Phvul.005G105600.1.v2.1.CDS.1_Pv_G19833_v2.1Phaseolus vulgarisCDS
Phvul.005G105600.1.v2.1.CDS.2Phvul.005G105600.1.v2.1.CDS.2_Pv_G19833_v2.1Phaseolus vulgarisCDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Phvul.005G105600.1.v2.1.three_prime_UTR.1Phvul.005G105600.1.v2.1.three_prime_UTR.1_Pv_G19833_v2.1Phaseolus vulgaristhree_prime_UTR


Homology
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BLAST of Phvul.005G105600.1 vs. DB:Swiss
Match: EPF1_ARATH (Protein EPIDERMAL PATTERNING FACTOR 1 OS=Arabidopsis thaliana OX=3702 GN=EPF1 PE=1 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.940e-32
Identity = 51/59 (86.44%), Postives = 57/59 (96.61%), Query Frame = 1 
Query:  187 RKDTLEIAGSRLPDCSHACGSCSPCRLVMVSFVCASLAEAESCPMAYKCMCHNKSYPVP 363
            R DT+++AGSRLPDCSHACGSCSPCRLVMVSFVCAS+ EAE+CPMAYKCMC+NKSYPVP
Sbjct:   46 RPDTVQVAGSRLPDCSHACGSCSPCRLVMVSFVCASVEEAETCPMAYKCMCNNKSYPVP 104
[Close]
BLAST of Phvul.005G105600.1 vs. DB:Swiss
Match: EPF2_ARATH (Protein EPIDERMAL PATTERNING FACTOR 2 OS=Arabidopsis thaliana OX=3702 GN=EPF2 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.401e-15
Identity = 40/108 (37.04%), Postives = 60/108 (55.56%), Query Frame = 1 
Query:   52 CVPVIISARHINLSPSRDGGEENRKDGIRMSKVRRERLHWEGRMGRKDTLEI----AGSRLPDCSHACGSCSPCRLVMVSFVCASLAEAESCPMAYKCMCHNKSYPVP 363
            C  V+ S R   L  + +GGE+   D      + + + H +  + +   +E+     GS LPDCS+ACG+CSPC+ VM+SF C+    AESC + Y+C C  + Y VP
Sbjct:   19 CSLVVNSIRTPPLKNTVNGGEKKNAD------IEQAQTHHKKEISKNGGVEMEMYPTGSSLPDCSYACGACSPCKRVMISFECSV---AESCSVIYRCTCRGRYYHVP 117
[Close]
BLAST of Phvul.005G105600.1 vs. DB:Swiss
Match: EPFL7_ARATH (EPIDERMAL PATTERNING FACTOR-like protein 7 OS=Arabidopsis thaliana OX=3702 GN=EPFL7 PE=1 SV=1)

HSP 1 Score: 62.7734 bits (151), Expect = 3.561e-12
Identity = 27/52 (51.92%), Postives = 39/52 (75.00%), Query Frame = 1 
Query:  208 AGSRLPDCSHACGSCSPCRLVMVSFVCASLAEAESCPMAYKCMCHNKSYPVP 363
            +GS +PDCS+ACG C PC+LV++S  C++   +E+CP+ YKC+C  K Y VP
Sbjct:  121 SGSSIPDCSNACGPCKPCKLVVISSTCSA---SEACPLVYKCLCKGKYYHVP 169
The following BLAST results are available for this feature:
BLAST of Phvul.005G105600.1 vs. DB:Swiss
Analysis Date: 2019-10-18 (BLAST: Phaseolus vulgaris G19833 genome v2.1 vs. Swissprot)
Total hits: 3
Match NameE-valueIdentityDescription
EPF1_ARATH2.940e-3286.44Protein EPIDERMAL PATTERNING FACTOR 1 OS=Arabidops... [more]
EPF2_ARATH1.401e-1537.04Protein EPIDERMAL PATTERNING FACTOR 2 OS=Arabidops... [more]
EPFL7_ARATH3.561e-1251.92EPIDERMAL PATTERNING FACTOR-like protein 7 OS=Arab... [more]
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InterPro
Analysis Name: InterProScan: Phaseolus vulgaris G19833 genome v2.1
Date Performed: 2019-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF17181EPFcoord: 70..119
e-value: 2.8E-15
score: 56.1

Sequences
The following sequences are available for this feature:

protein sequence of Phvul.005G105600.1_Pv_G19833_v2.1

>Phvul.005G105600.1_Pv_G19833_v2.1 ID=Phvul.005G105600.1_Pv_G19833_v2.1; Name=Phvul.005G105600.1_Pv_G19833_v2.1; organism=Phaseolus vulgaris; type=polypeptide; length=122bp
MRRTSLYAAAFFILFLLCVPVIISARHINLSPSRDGGEENRKDGIRMSKV
RRERLHWEGRMGRKDTLEIAGSRLPDCSHACGSCSPCRLVMVSFVCASLA
EAESCPMAYKCMCHNKSYPVP*
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mRNA from alignment at Chr05:32541754..32542890+

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Phvul.005G105600.1_Pv_G19833_v2.1 ID=Phvul.005G105600.1_Pv_G19833_v2.1; Name=Phvul.005G105600.1; organism=Phaseolus vulgaris; type=mRNA; length=1137bp; location=Sequence derived from: Chr05:32541754..32542890+ (Phaseolus vulgaris
AGTAAATTTATTAGCAGAACTCGAAGGCACATGAACATTAATATCAAATG
GTAAAACGCAGTAATAGCAAGCAAATAGAAGTAAAAAGTTGAGGCTGCAT
TTATGCTACCCAACAACACCTCTGCCTATGTGGCAGCCCTTCCACATACT
ACTCACGTAGAACAACCACTTTTAACTCTTGTGTTTTTAATTCTTATTGC
TTCTCCTTTCCTTCATCAAACACCAAAACCTCGAGCAATCCTGTGACTAA
GTGTGCGCATGCAACATCTTCTTGCATTTTCACCCTCTTTCATGTGACCT
CTTCTTGCACAATCCTGTGAATCGCTTCAATTCCTTACACCCTCTTTTAT
TCCTTAATTATATATACAAATGCACCTTCAAACACATCACAACATCTCAG
AAAATTCGCCCCAAAACAACAAGAATGAGGAGGACTTCTCTCTATGCTGC
TGCCTTTTTCATTCTCTTTTTACTCTGTGTTCCTGTAATCATCTCAGCCA
GACACATAAACCTGTCACCTTCACGTAAGTCTCAAATTCTTAATTTCATG
CCACATTATGGATCACAGGTTTAACACTTGTAATCAGTTCTAAGCAATTC
TACATATTATGCAACAACAATCAATGATGAAATGAGTGTGGTTGCATTTT
AATCTAATGTTGCATGATTTTGATGTTAAATAGGAGATGGTGGAGAAGAG
AATAGAAAAGATGGAATAAGAATGAGCAAAGTGAGGAGAGAAAGGTTGCA
CTGGGAAGGAAGAATGGGAAGAAAAGACACACTGGAAATAGCAGGGTCGA
GATTGCCGGATTGCTCTCACGCGTGTGGATCTTGTTCGCCATGCAGGTTG
GTGATGGTGAGCTTCGTTTGTGCATCGCTTGCAGAGGCTGAGTCTTGTCC
AATGGCTTACAAGTGCATGTGCCATAACAAGTCCTACCCTGTTCCATGAA
TCATAATCTCCCTCTCAGATTCAATTTCTAACCCTCGTGTAACATACACT
GTTGTTAGTTGTTAAGAAACCAATAATGGTTCATGTTTGAGTTTCTGAAT
CTCTTTTCTTTTCACTGTTCAACAAAACATAGGAATCGTGAAATCAGAAT
CAATGCTTGCTGTTAACACCCCAACTTCTCTACTTAT
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Coding sequence (CDS) from alignment at Chr05:32541754..32542890+

>Phvul.005G105600.1_Pv_G19833_v2.1 ID=Phvul.005G105600.1_Pv_G19833_v2.1; Name=Phvul.005G105600.1; organism=Phaseolus vulgaris; type=CDS; length=366bp; location=Sequence derived from: Chr05:32541754..32542890+ (Phaseolus vulgaris
ATGAGGAGGACTTCTCTCTATGCTGCTGCCTTTTTCATTCTCTTTTTACT
CTGTGTTCCTGTAATCATCTCAGCCAGACACATAAACCTGTCACCTTCAC
GAGATGGTGGAGAAGAGAATAGAAAAGATGGAATAAGAATGAGCAAAGTG
AGGAGAGAAAGGTTGCACTGGGAAGGAAGAATGGGAAGAAAAGACACACT
GGAAATAGCAGGGTCGAGATTGCCGGATTGCTCTCACGCGTGTGGATCTT
GTTCGCCATGCAGGTTGGTGATGGTGAGCTTCGTTTGTGCATCGCTTGCA
GAGGCTGAGTCTTGTCCAATGGCTTACAAGTGCATGTGCCATAACAAGTC
CTACCCTGTTCCATGA
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