Phvul.006G103600.1

Transcript Overview
NamePhvul.006G103600.1
Unique NamePhvul.006G103600.1_Pv_G19833_v2.1
TypemRNA
OrganismPhaseolus vulgaris (Common bean)
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr06supercontigChr06:21299655..21300131 +Phaseolus vulgaris G19833 genome v2.1n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Phaseolus vulgaris G19833 genome v2.12019-09-17
InterProScan: Phaseolus vulgaris G19833 genome v2.12019-10-18
BLAST: Phaseolus vulgaris G19833 genome v2.1 vs. Swissprot2019-10-18
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
pvpvR252Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
pvvuR536Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
pvvuR554Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
ccpvL0730Cajanus cajan Asha genome v1.0Cajanus cajan
ccpvL0913Cajanus cajan Asha genome v1.0Cajanus cajan
anpvL0491Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anpvL0781Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anpvL0961Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anpvL1308Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
pvvfhR572Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
pvvfhR582Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
pvvssR649Vicia sativa cv. Studenica genome v1.0Vicia sativa
pvvssR663Vicia sativa cv. Studenica genome v1.0Vicia sativa
carpvL225Cicer arietinum
carpvL338Cicer arietinum
ccapvL290Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccapvL381Cajanus cajan cv. Asha genome v2.0Cajanus cajan
pvvumR581Vigna umbellata FF25 genome v1.0Vigna umbellata
pvvumR582Vigna umbellata FF25 genome v1.0Vigna umbellata
pvvumR617Vigna umbellata FF25 genome v1.0Vigna umbellata
pvvasR620Vigna angularis cv. Shumari genome v1.a1Vigna angularis
pvvasR640Vigna angularis cv. Shumari genome v1.a1Vigna angularis
pvvasR641Vigna angularis cv. Shumari genome v1.a1Vigna angularis
pvvunR494Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
pvvunR511Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata

Orthologs
Gene/TranscriptAssemblySpecies
Vum_08G01283.1Vigna umbellata FF25 genome v1.0Vigna umbellata
Vfaba.Hedin2.R1.5g186040.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
Vigun07g156600.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
Vigan.08G160700.01Vigna angularis cv. Shumari genome v1.a1Vigna angularis
Vigun06g114500.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
Cc_v2.0_04049.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan
rna-KK1_011049Cajanus cajan Asha genome v1.0Cajanus cajan
rna-TanjilR_10132Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Vigun07g156600.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
jg30841.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
rna-KK1_007171Cajanus cajan Asha genome v1.0Cajanus cajan
Vigun06g114500.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
Phvul.007G189000.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Phvul.006G103600Phvul.006G103600_Pv_G19833_v2.1Phaseolus vulgarisgene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Phvul.006G103600.1Phvul.006G103600.1_Pv_G19833_v2.1-proteinPhaseolus vulgarispolypeptide
Phvul.006G103600.1_Pv_G19833_v2.1Phvul.006G103600.1_Pv_G19833_v2.1Phaseolus vulgarispolypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Phvul.006G103600.1.v2.1.five_prime_UTR.1Phvul.006G103600.1.v2.1.five_prime_UTR.1_Pv_G19833_v2.1Phaseolus vulgarisfive_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Phvul.006G103600.1.v2.1.CDS.1Phvul.006G103600.1.v2.1.CDS.1_Pv_G19833_v2.1Phaseolus vulgarisCDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Phvul.006G103600.1.v2.1.three_prime_UTR.1Phvul.006G103600.1.v2.1.three_prime_UTR.1_Pv_G19833_v2.1Phaseolus vulgaristhree_prime_UTR


Homology
The following BLAST results are available for this feature:
BLAST of Phvul.006G103600.1 vs.
Analysis Date: 2019-10-18 (BLAST: Phaseolus vulgaris G19833 genome v2.1 vs. Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Sequences
The following sequences are available for this feature:

protein sequence of Phvul.006G103600.1_Pv_G19833_v2.1

>Phvul.006G103600.1_Pv_G19833_v2.1 ID=Phvul.006G103600.1_Pv_G19833_v2.1; Name=Phvul.006G103600.1_Pv_G19833_v2.1; organism=Phaseolus vulgaris; type=polypeptide; length=92bp
MGRHWYMKMSLLLTTMILVLSLQKTSGARTLEGEQWLHKNVVLLHSLQRG
PVNSSQRNPCSTVPGRNKGRCTLGEIHAHAPPLFPKSEAAR*
back to top

mRNA from alignment at Chr06:21299655..21300131+

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Phvul.006G103600.1_Pv_G19833_v2.1 ID=Phvul.006G103600.1_Pv_G19833_v2.1; Name=Phvul.006G103600.1; organism=Phaseolus vulgaris; type=mRNA; length=477bp; location=Sequence derived from: Chr06:21299655..21300131+ (Phaseolus vulgaris
GCATTTGATATCTTATCAATTTTTTTACTAGTCTTTTGCTTTGCTCCACA
AGATCTCTACATCACATAATCAGAAGTGATTCAACATAATTTCCCCATCA
CGAAATGGGTCGACATTGGTACATGAAGATGAGTTTGCTCCTCACAACAA
TGATTCTGGTGTTGAGTTTGCAGAAAACAAGTGGAGCAAGAACACTAGAG
GGAGAGCAATGGCTGCACAAGAATGTAGTACTGCTCCATTCATTGCAAAG
AGGCCCCGTAAATTCCTCTCAGAGAAACCCATGTTCCACCGTACCTGGTC
GCAATAAAGGGCGTTGCACTTTAGGTGAAATTCATGCTCATGCACCACCA
CTCTTTCCCAAGTCTGAAGCAGCACGATGATGATATGATACCCCAAAAAT
ATCTGCCACTGCACCTCAAAAATTCAAACTCTGTCAAAAGTACTCTAATT
AATATATATACGTGTTTGTATATGAAT
back to top

Coding sequence (CDS) from alignment at Chr06:21299655..21300131+

>Phvul.006G103600.1_Pv_G19833_v2.1 ID=Phvul.006G103600.1_Pv_G19833_v2.1; Name=Phvul.006G103600.1; organism=Phaseolus vulgaris; type=CDS; length=276bp; location=Sequence derived from: Chr06:21299655..21300131+ (Phaseolus vulgaris
ATGGGTCGACATTGGTACATGAAGATGAGTTTGCTCCTCACAACAATGAT
TCTGGTGTTGAGTTTGCAGAAAACAAGTGGAGCAAGAACACTAGAGGGAG
AGCAATGGCTGCACAAGAATGTAGTACTGCTCCATTCATTGCAAAGAGGC
CCCGTAAATTCCTCTCAGAGAAACCCATGTTCCACCGTACCTGGTCGCAA
TAAAGGGCGTTGCACTTTAGGTGAAATTCATGCTCATGCACCACCACTCT
TTCCCAAGTCTGAAGCAGCACGATGA
back to top