Phvul.006G113800.1

Transcript Overview
NamePhvul.006G113800.1
Unique NamePhvul.006G113800.1_Pv_G19833_v2.1
TypemRNA
OrganismPhaseolus vulgaris (Common bean)
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr06supercontigChr06:22218791..22221829 +Phaseolus vulgaris G19833 genome v2.1n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Phaseolus vulgaris G19833 genome v2.12019-09-17
InterProScan: Phaseolus vulgaris G19833 genome v2.12019-10-18
BLAST: Phaseolus vulgaris G19833 genome v2.1 vs. Swissprot2019-10-18
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
pvpvL156Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
pspvL233Pisum sativum Cameor genome v1aPisum sativum
caipvL0291Cicer arietinum ICC 4958 genome v2Cicer arietinum
caipvL0297Cicer arietinum ICC 4958 genome v2Cicer arietinum
crpvL276Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
capvL235Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
capvL630Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ccpvL0910Cajanus cajan Asha genome v1.0Cajanus cajan
anpvL0952Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
aspvL216Vigna angularis Jingnong 6 genome v1.1Vigna angularis
avjpvL133Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjpvL323Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
carpvL225Cicer arietinum
ccapvL381Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccapvL835Cajanus cajan cv. Asha genome v2.0Cajanus cajan

Orthologs
Gene/TranscriptAssemblySpecies
rna-TanjilR_25686Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Psat3g002280.1Pisum sativum Cameor genome v1aPisum sativum
Cc_v2.0_08545.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan
Ca_07273.1Cicer arietinum ICC 4958 genome v2Cicer arietinum
Ca_01322Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
LR48_mrnaVigan09g163500Vigna angularis Jingnong 6 genome v1.1Vigna angularis
rna-KK1_011225Cajanus cajan Asha genome v1.0Cajanus cajan
Ca_07542.1Cicer arietinum ICC 4958 genome v2Cicer arietinum
Cr_07608.1Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
Ca_05842Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
Va09G049650.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
Cc_v2.0_22791.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan
Va01G004550.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
Phvul.002G300000.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Phvul.006G113800Phvul.006G113800_Pv_G19833_v2.1Phaseolus vulgarisgene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Phvul.006G113800.1Phvul.006G113800.1_Pv_G19833_v2.1-proteinPhaseolus vulgarispolypeptide
Phvul.006G113800.1_Pv_G19833_v2.1Phvul.006G113800.1_Pv_G19833_v2.1Phaseolus vulgarispolypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Phvul.006G113800.1.v2.1.five_prime_UTR.1Phvul.006G113800.1.v2.1.five_prime_UTR.1_Pv_G19833_v2.1Phaseolus vulgarisfive_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Phvul.006G113800.1.v2.1.CDS.1Phvul.006G113800.1.v2.1.CDS.1_Pv_G19833_v2.1Phaseolus vulgarisCDS
Phvul.006G113800.1.v2.1.CDS.2Phvul.006G113800.1.v2.1.CDS.2_Pv_G19833_v2.1Phaseolus vulgarisCDS
Phvul.006G113800.1.v2.1.CDS.3Phvul.006G113800.1.v2.1.CDS.3_Pv_G19833_v2.1Phaseolus vulgarisCDS
Phvul.006G113800.1.v2.1.CDS.4Phvul.006G113800.1.v2.1.CDS.4_Pv_G19833_v2.1Phaseolus vulgarisCDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Phvul.006G113800.1.v2.1.three_prime_UTR.1Phvul.006G113800.1.v2.1.three_prime_UTR.1_Pv_G19833_v2.1Phaseolus vulgaristhree_prime_UTR


Homology
[Close]
BLAST of Phvul.006G113800.1 vs. DB:Swiss
Match: KELP_ARATH (RNA polymerase II transcriptional coactivator KELP OS=Arabidopsis thaliana OX=3702 GN=KELP PE=1 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 4.415e-39
Identity = 78/154 (50.65%), Postives = 107/154 (69.48%), Query Frame = 1 
Query:   43 VLDILNKSNMEEATEFTIRLTASDRLGIDLSDPTSKHFVRSIVESYLLSVMANGKAEEKKDNVVEANEDLEVMKLRRE---DPESVICHLSDRRNVAVKTFKGVSLVSIREFYMKDGKLVPGSKGISLPSEQWSIFKKSVPAIEEAIIKMEGRI 495
            V++IL++S+M+E TEF +R  AS++L IDLS+ + K FVRS+VE +L    A  + E  + N  E + D +  K  +E   D + +IC LSD+R V ++ FKG SLVSIRE+Y KDGK +P SKGISL  EQWS FKK++PAIE A+ KME R+
Sbjct:   13 VIEILSESDMKEITEFKVRKLASEKLAIDLSEKSHKAFVRSVVEKFLDEERAR-EYENSQVNKEEEDGDKDCGKGNKEFDDDGDLIICRLSDKRRVTIQEFKGKSLVSIREYYKKDGKELPTSKGISLTDEQWSTFKKNMPAIENAVKKMESRV 165
[Close]
BLAST of Phvul.006G113800.1 vs. DB:Swiss
Match: KIWI_ARATH (RNA polymerase II transcriptional coactivator KIWI OS=Arabidopsis thaliana OX=3702 GN=KIWI PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 1.478e-12
Identity = 28/62 (45.16%), Postives = 42/62 (67.74%), Query Frame = 1 
Query:  289 VICHLSDRRNVAVKTFKGVSLVSIREFYMKDGKLVPGSKGISLPSEQWSIFKKSVPAIEEAI 474
            V+C++S  R V+V+ + G   + IREFY+KDGK +PG KGISL  +QW+  +     IE+A+
Sbjct:   42 VVCNISKNRRVSVRNWNGKIWIDIREFYVKDGKTLPGKKGISLSVDQWNTLRNHAEDIEKAL 103
[Close]
BLAST of Phvul.006G113800.1 vs. DB:Swiss
Match: TCP4_PONAB (Activated RNA polymerase II transcriptional coactivator p15 OS=Pongo abelii OX=9601 GN=SUB1 PE=2 SV=1)

HSP 1 Score: 56.225 bits (134), Expect = 2.030e-8
Identity = 27/65 (41.54%), Postives = 43/65 (66.15%), Query Frame = 1 
Query:  292 ICHLSDRRNVAVKTFKGVSLVSIREFYM-KDGKLVPGSKGISLPSEQWSIFKKSVPAIEEAIIKM 483
            +  +   R V+V+ FKG  L+ IRE++M  +G++ PG KGISL  EQWS  K+ +  I++A+ K+
Sbjct:   63 MFQIGKMRYVSVRDFKGKVLIDIREYWMDPEGEMKPGRKGISLNPEQWSQLKEQISDIDDAVRKL 127
[Close]
BLAST of Phvul.006G113800.1 vs. DB:Swiss
Match: TCP4_MACFA (Activated RNA polymerase II transcriptional coactivator p15 OS=Macaca fascicularis OX=9541 GN=SUB1 PE=2 SV=1)

HSP 1 Score: 56.225 bits (134), Expect = 2.030e-8
Identity = 27/65 (41.54%), Postives = 43/65 (66.15%), Query Frame = 1 
Query:  292 ICHLSDRRNVAVKTFKGVSLVSIREFYM-KDGKLVPGSKGISLPSEQWSIFKKSVPAIEEAIIKM 483
            +  +   R V+V+ FKG  L+ IRE++M  +G++ PG KGISL  EQWS  K+ +  I++A+ K+
Sbjct:   63 MFQIGKMRYVSVRDFKGKVLIDIREYWMDPEGEMKPGRKGISLNPEQWSQLKEQISDIDDAVRKL 127
[Close]
BLAST of Phvul.006G113800.1 vs. DB:Swiss
Match: TCP4_HUMAN (Activated RNA polymerase II transcriptional coactivator p15 OS=Homo sapiens OX=9606 GN=SUB1 PE=1 SV=3)

HSP 1 Score: 56.225 bits (134), Expect = 2.030e-8
Identity = 27/65 (41.54%), Postives = 43/65 (66.15%), Query Frame = 1 
Query:  292 ICHLSDRRNVAVKTFKGVSLVSIREFYM-KDGKLVPGSKGISLPSEQWSIFKKSVPAIEEAIIKM 483
            +  +   R V+V+ FKG  L+ IRE++M  +G++ PG KGISL  EQWS  K+ +  I++A+ K+
Sbjct:   63 MFQIGKMRYVSVRDFKGKVLIDIREYWMDPEGEMKPGRKGISLNPEQWSQLKEQISDIDDAVRKL 127
[Close]
BLAST of Phvul.006G113800.1 vs. DB:Swiss
Match: TCP4_CHICK (Activated RNA polymerase II transcriptional coactivator p15 OS=Gallus gallus OX=9031 GN=SUB1 PE=2 SV=1)

HSP 1 Score: 55.8398 bits (133), Expect = 2.812e-8
Identity = 26/65 (40.00%), Postives = 44/65 (67.69%), Query Frame = 1 
Query:  292 ICHLSDRRNVAVKTFKGVSLVSIREFYM-KDGKLVPGSKGISLPSEQWSIFKKSVPAIEEAIIKM 483
            +  +   R V+V+ FKG  L+ IRE++M ++G++ PG KGISL  EQW+  K+ +  I++A+ K+
Sbjct:   62 MFQIGKMRYVSVRDFKGKVLIDIREYWMDQEGEMKPGRKGISLNPEQWNQLKEQISDIDDAVRKL 126
[Close]
BLAST of Phvul.006G113800.1 vs. DB:Swiss
Match: TCP4_MOUSE (Activated RNA polymerase II transcriptional coactivator p15 OS=Mus musculus OX=10090 GN=Sub1 PE=1 SV=3)

HSP 1 Score: 55.0694 bits (131), Expect = 4.577e-8
Identity = 27/65 (41.54%), Postives = 43/65 (66.15%), Query Frame = 1 
Query:  292 ICHLSDRRNVAVKTFKGVSLVSIREFYM-KDGKLVPGSKGISLPSEQWSIFKKSVPAIEEAIIKM 483
            +  +   R V+V+ FKG  L+ IRE++M  +G++ PG KGISL  EQWS  K+ +  I++A+ K+
Sbjct:   63 MFQIGKMRYVSVRDFKGKILIDIREYWMDSEGEMKPGRKGISLNMEQWSQLKEQISDIDDAVRKL 127
[Close]
BLAST of Phvul.006G113800.1 vs. DB:Swiss
Match: TCP4_RAT (Activated RNA polymerase II transcriptional coactivator p15 OS=Rattus norvegicus OX=10116 GN=Sub1 PE=1 SV=3)

HSP 1 Score: 55.0694 bits (131), Expect = 5.292e-8
Identity = 27/65 (41.54%), Postives = 43/65 (66.15%), Query Frame = 1 
Query:  292 ICHLSDRRNVAVKTFKGVSLVSIREFYM-KDGKLVPGSKGISLPSEQWSIFKKSVPAIEEAIIKM 483
            +  +   R V+V+ FKG  L+ IRE++M  +G++ PG KGISL  EQWS  K+ +  I++A+ K+
Sbjct:   63 MFQIGKMRYVSVRDFKGKILIDIREYWMDSEGEMKPGRKGISLNMEQWSQLKEQISDIDDAVRKL 127
[Close]
BLAST of Phvul.006G113800.1 vs. DB:Swiss
Match: TCP4_SCHPO (Putative RNA polymerase II transcriptional coactivator OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPAC16A10.02 PE=1 SV=1)

HSP 1 Score: 51.6026 bits (122), Expect = 9.978e-7
Identity = 18/57 (31.58%), Postives = 37/57 (64.91%), Query Frame = 1 
Query:  304 SDRRNVAVKTFKGVSLVSIREFYMKDGKLVPGSKGISLPSEQWSIFKKSVPAIEEAI 474
            ++++ + +  F+G   V IRE+Y KDG ++PG KGI+L   +W   K+ +  +++++
Sbjct:   35 TEKKRITLSEFRGTRYVHIREYYEKDGDMLPGKKGIALNINEWKKLKQLIHEVDDSL 91
The following BLAST results are available for this feature:
BLAST of Phvul.006G113800.1 vs. DB:Swiss
Analysis Date: 2019-10-18 (BLAST: Phaseolus vulgaris G19833 genome v2.1 vs. Swissprot)
Total hits: 9
Match NameE-valueIdentityDescription
KELP_ARATH4.415e-3950.65RNA polymerase II transcriptional coactivator KELP... [more]
KIWI_ARATH1.478e-1245.16RNA polymerase II transcriptional coactivator KIWI... [more]
TCP4_PONAB2.030e-841.54Activated RNA polymerase II transcriptional coacti... [more]
TCP4_MACFA2.030e-841.54Activated RNA polymerase II transcriptional coacti... [more]
TCP4_HUMAN2.030e-841.54Activated RNA polymerase II transcriptional coacti... [more]
TCP4_CHICK2.812e-840.00Activated RNA polymerase II transcriptional coacti... [more]
TCP4_MOUSE4.577e-841.54Activated RNA polymerase II transcriptional coacti... [more]
TCP4_RAT5.292e-841.54Activated RNA polymerase II transcriptional coacti... [more]
TCP4_SCHPO9.978e-731.58Putative RNA polymerase II transcriptional coactiv... [more]
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InterPro
Analysis Name: InterProScan: Phaseolus vulgaris G19833 genome v2.1
Date Performed: 2019-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 70..90
NoneNo IPR availableGENE3D4.10.60.10coord: 441..484
e-value: 1.7E-5
score: 26.9
NoneNo IPR availablePFAMPF14223Retrotran_gag_2coord: 267..398
e-value: 5.5E-15
score: 55.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 461..494
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 461..478
IPR003173Transcriptional coactivator p15 (PC4)PFAMPF02229PC4coord: 99..149
e-value: 2.2E-19
score: 68.8
IPR009044ssDNA-binding transcriptional regulatorGENE3D2.30.31.10coord: 90..166
e-value: 9.3E-23
score: 81.4
IPR009044ssDNA-binding transcriptional regulatorSUPERFAMILY54447ssDNA-binding transcriptional regulator domaincoord: 98..160
IPR014876DEK, C-terminalPFAMPF08766DEK_Ccoord: 7..61
e-value: 6.8E-10
score: 38.7
IPR001878Zinc finger, CCHC-typePROSITEPS50158ZF_CCHCcoord: 447..460
score: 9.224

Sequences
The following sequences are available for this feature:

protein sequence of Phvul.006G113800.1_Pv_G19833_v2.1

>Phvul.006G113800.1_Pv_G19833_v2.1 ID=Phvul.006G113800.1_Pv_G19833_v2.1; Name=Phvul.006G113800.1_Pv_G19833_v2.1; organism=Phaseolus vulgaris; type=polypeptide; length=495bp
MSMESETQRKIEETVLDILNKSNMEEATEFTIRLTASDRLGIDLSDPTSK
HFVRSIVESYLLSVMANGKAEEKKDNVVEANEDLEVMKLRREDPESVICH
LSDRRNVAVKTFKGVSLVSIREFYMKDGKLVPGSKGISLPSEQWSIFKKS
VPAIEEAIIKMEGRIRSELNGKQNGDGSNSVPLEPVVPVPPLEPVVPVPP
LEPIVPIEVVRFDGKNFQFWAQQMTLLLKQLKIEYVLIEPCPNAALGEGA
KAEDLVTAKAAERRWLNDDLVCSRNILSHLSDPLFNQYADRKMSSKELWE
ELNLVYLSEEFGTKRSIVKKYIEFQIVDEKTVSEQVRDLNGIADSIAASG
IFMDDNFHVNVIISKLPPSWKNFCMKLLREEYLPFWKLMECIQVEEEFRC
GVRRVGEHSNSVGFHQDNRGGGQRRVDYKPLGMCRNRPEINARSIPCNVC
GKRGHLSKNCWRRSDKQTNERKAEEDVNTPTTEIGIVAATPPPT*
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mRNA from alignment at Chr06:22218791..22221829+

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Phvul.006G113800.1_Pv_G19833_v2.1 ID=Phvul.006G113800.1_Pv_G19833_v2.1; Name=Phvul.006G113800.1; organism=Phaseolus vulgaris; type=mRNA; length=3039bp; location=Sequence derived from: Chr06:22218791..22221829+ (Phaseolus vulgaris
CTCCCACAGTATATATGGGGGCTGAATCACATATTGGGTGACATTTGATC
TTTTAATTTGTTTTAAGTTTATGAGTATGGAATCAGAAACCCAAAGAAAA
ATTGAGGAAACAGTGTTGGACATACTCAACAAATCCAACATGGAAGAAGC
CACTGAGTTCACCATTCGACTCACTGCCTCGGACCGACTCGGAATCGACC
TCTCTGACCCCACCAGTAAACACTTTGTCAGAAGCATCGTTGAGTCCTAT
CTTCTCTCCGTTATGGCCAATGGAAAGGCGGAGGAGAAGAAGGACAATGT
CGTTGAGGCCAACGAAGATTTGGAGGTGATGAAACTTAGGAGGGAAGATC
CTGAAAGCGTTATTTGTCATGTAAGTTCTGCTTCTTCCATATTTCATAAA
AGCCCTAGATTATTTCTGTTAGGTTCCTCTGCACCCTATGGACTGGGTAA
TTGATGGAGGGAACAAGTCAAGTTTACAAACTTGTTGATGAGTGTTTAAT
TTATGTTTTTAAATTTTGTTTGATTGGTCTAGCTGTCAGACAGGAGGAAC
GTGGCTGTGAAAACATTCAAAGGGGTATCACTGGTCTCAATTAGGGAGTT
TTATATGAAAGATGGAAAACTAGTTCCTGGTTCTAAAGGTGATTACATAA
TCTATTGTTTGGTCTTGTGAATTTGCTGTTTTCTGTTGTACACTGTAAAT
GTTGCTGGAATTTTAAATTATGTGTTTGTAAGTTGGCCATGATCAGTAGT
TTATGACAAGTTAATTTCATTCTTTATAGTCTAAAAATCTCTGCTTTTTG
TATCTTTCTAGCTTAGGGTAAGATATTAGTGGGACTATTGTTGAGAAGAA
TGACAAAATCAATTATAGTCAGTGTGGGAGCCATGTCCTTTTGTTTTGTA
AAACAGGAAAGATATGAACAACGGTACACTATCTTTTCCCAATTAATCGA
TTAATTTCATTCATAGTCAATTATGATTAGTGCACACAGATACCAATAAC
ACTACATCTCTCTTAGGTGAAATTGACTAAAGAAAGCCACTAGGACTAAA
TAACACTACATCTCTCTTAGGTGAAATTGACTAAAGAAAGCCACTAGGAC
TAAATGAGGAGAGTAAATCACTTGTTCTTGAAAAATTGGTGGAGTCTGAG
AATCACATTAGAAGAAATAATATTAAAGAATCTCATGGTCAATAATAACC
TTGAGATTTAAGCTTTTAATCAAATCTGATGATATCACTTTTCATGTAAC
TAAGTCATCTAATGAGATATTATTATCATCCTTGTCATTGTATTTGTGTT
TTGCCAGCTGCTACATGCATAAATTAGAGGATTTGAGTTGAGGTCTGATT
TAGATTTTGAGGATAATTACTTGAGTTTATGTGACTCTGTTTTGCTGAGA
ACTTGGTTAATCTGAATTTTGAAACTAAACATGTCCCTTTTCCTGAATTT
TATTTTAGGTATAAGTTTACCTTCTGAACAATGGTCAATCTTCAAGAAGA
GTGTTCCTGCCATAGAAGAAGCTATCATAAAGATGGAAGGAAGGATAAGG
TGGGTATGCAATGCTGACATGTGAGCTATGTGATAACATAAAAGGTCATG
GCTTCCAATGATATTGATATTGAATATTGAAATGTTATGTTGTGGAAATT
GCTGAGTGCATATGTGCAGAATGCTTTTTTTTGTTTTTATTCTCTTGGTA
TATTACCAAATATGAATTTATGATATTCTTTCTTGTAAGTTTAGTTGGAG
AAATTTCTGCATTTTTCTGAATACCTACTGCTTACTTTGCTGGAAGGAAA
ACATGTTTCTTGGTGTTTAATCATGCAGATAAATGCATGGTAAAAATTGT
TTTTTAACAGTAGTGAAAACATTTATTTGTGGGCTAGTCTAACCTAGAAT
ATGCAATCAACACAATGTAGATCGGAGCTTAATGGTAAACAAAATGGAGA
TGGGTCAAATTCAGTCCCTCTTGAGCCTGTTGTCCCCGTTCCTCCACTTG
AGCCTGTTGTCCCTGTTCCTCCACTTGAGCCTATTGTCCCTATTGAAGTT
GTCCGTTTTGATGGGAAGAATTTCCAATTCTGGGCTCAGCAGATGACATT
ATTATTGAAACAATTAAAGATTGAATATGTGCTAATTGAACCATGCCCGA
ATGCTGCATTAGGGGAAGGTGCAAAGGCTGAAGACCTTGTCACAGCCAAG
GCTGCAGAAAGGAGATGGTTGAATGATGATTTAGTGTGTTCTCGTAATAT
CTTGAGCCATTTATCTGATCCTCTTTTCAACCAGTATGCGGACAGAAAAA
TGAGCAGCAAGGAGTTGTGGGAAGAGCTAAATCTGGTTTATCTCTCTGAG
GAATTTGGAACCAAGAGATCTATAGTGAAAAAGTACATTGAATTTCAGAT
AGTTGATGAAAAAACAGTGAGCGAGCAAGTCCGAGACCTAAATGGCATTG
CAGATTCTATTGCTGCTTCTGGAATATTCATGGATGATAACTTTCATGTC
AATGTCATCATTTCAAAGCTTCCACCATCGTGGAAGAACTTCTGCATGAA
GTTATTGCGTGAGGAATATCTACCTTTCTGGAAGTTAATGGAATGTATAC
AGGTAGAGGAAGAATTTCGGTGTGGAGTACGACGAGTGGGTGAACATTCT
AACAGTGTGGGATTTCACCAGGACAATAGAGGTGGTGGACAGAGGAGGGT
TGACTATAAGCCTCTAGGAATGTGCAGGAATAGGCCAGAAATCAATGCCA
GGAGTATACCCTGTAATGTATGTGGCAAGAGGGGACATCTTTCTAAAAAT
TGCTGGAGAAGAAGTGACAAGCAAACTAATGAGAGGAAAGCAGAAGAGGA
TGTGAACACACCTACTACAGAAATTGGTATTGTGGCTGCTACCCCTCCCC
CTACCTAGTAAGTTTGTACAAAAACATGCTTTGTATTTTGAACCAGGACA
CAGAAATCTACATTTTTAGGCCAGACAAGTGAGTTTGACATTTATGTAAC
TCGTAGATAGTGTCTTTGAATTACAGGAATTGGTACAGC
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Coding sequence (CDS) from alignment at Chr06:22218791..22221829+

>Phvul.006G113800.1_Pv_G19833_v2.1 ID=Phvul.006G113800.1_Pv_G19833_v2.1; Name=Phvul.006G113800.1; organism=Phaseolus vulgaris; type=CDS; length=1485bp; location=Sequence derived from: Chr06:22218791..22221829+ (Phaseolus vulgaris
ATGAGTATGGAATCAGAAACCCAAAGAAAAATTGAGGAAACAGTGTTGGA
CATACTCAACAAATCCAACATGGAAGAAGCCACTGAGTTCACCATTCGAC
TCACTGCCTCGGACCGACTCGGAATCGACCTCTCTGACCCCACCAGTAAA
CACTTTGTCAGAAGCATCGTTGAGTCCTATCTTCTCTCCGTTATGGCCAA
TGGAAAGGCGGAGGAGAAGAAGGACAATGTCGTTGAGGCCAACGAAGATT
TGGAGGTGATGAAACTTAGGAGGGAAGATCCTGAAAGCGTTATTTGTCAT
CTGTCAGACAGGAGGAACGTGGCTGTGAAAACATTCAAAGGGGTATCACT
GGTCTCAATTAGGGAGTTTTATATGAAAGATGGAAAACTAGTTCCTGGTT
CTAAAGGTATAAGTTTACCTTCTGAACAATGGTCAATCTTCAAGAAGAGT
GTTCCTGCCATAGAAGAAGCTATCATAAAGATGGAAGGAAGGATAAGATC
GGAGCTTAATGGTAAACAAAATGGAGATGGGTCAAATTCAGTCCCTCTTG
AGCCTGTTGTCCCCGTTCCTCCACTTGAGCCTGTTGTCCCTGTTCCTCCA
CTTGAGCCTATTGTCCCTATTGAAGTTGTCCGTTTTGATGGGAAGAATTT
CCAATTCTGGGCTCAGCAGATGACATTATTATTGAAACAATTAAAGATTG
AATATGTGCTAATTGAACCATGCCCGAATGCTGCATTAGGGGAAGGTGCA
AAGGCTGAAGACCTTGTCACAGCCAAGGCTGCAGAAAGGAGATGGTTGAA
TGATGATTTAGTGTGTTCTCGTAATATCTTGAGCCATTTATCTGATCCTC
TTTTCAACCAGTATGCGGACAGAAAAATGAGCAGCAAGGAGTTGTGGGAA
GAGCTAAATCTGGTTTATCTCTCTGAGGAATTTGGAACCAAGAGATCTAT
AGTGAAAAAGTACATTGAATTTCAGATAGTTGATGAAAAAACAGTGAGCG
AGCAAGTCCGAGACCTAAATGGCATTGCAGATTCTATTGCTGCTTCTGGA
ATATTCATGGATGATAACTTTCATGTCAATGTCATCATTTCAAAGCTTCC
ACCATCGTGGAAGAACTTCTGCATGAAGTTATTGCGTGAGGAATATCTAC
CTTTCTGGAAGTTAATGGAATGTATACAGGTAGAGGAAGAATTTCGGTGT
GGAGTACGACGAGTGGGTGAACATTCTAACAGTGTGGGATTTCACCAGGA
CAATAGAGGTGGTGGACAGAGGAGGGTTGACTATAAGCCTCTAGGAATGT
GCAGGAATAGGCCAGAAATCAATGCCAGGAGTATACCCTGTAATGTATGT
GGCAAGAGGGGACATCTTTCTAAAAATTGCTGGAGAAGAAGTGACAAGCA
AACTAATGAGAGGAAAGCAGAAGAGGATGTGAACACACCTACTACAGAAA
TTGGTATTGTGGCTGCTACCCCTCCCCCTACCTAG
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR003173PC4_C
IPR009044ssDNA-bd_transcriptional_reg
IPR014876DEK_C
IPR001878Znf_CCHC
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of DNA-templated transcription
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0008270zinc ion binding
GO:0003676nucleic acid binding