Phvul.009G111400.1

Transcript Overview
NamePhvul.009G111400.1
Unique NamePhvul.009G111400.1_Pv_G19833_v2.1
TypemRNA
OrganismPhaseolus vulgaris (Common bean)
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr09supercontigChr09:17218498..17222110 -Phaseolus vulgaris G19833 genome v2.1n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Phaseolus vulgaris G19833 genome v2.12019-09-17
InterProScan: Phaseolus vulgaris G19833 genome v2.12019-10-18
BLAST: Phaseolus vulgaris G19833 genome v2.1 vs. Swissprot2019-10-18
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
pvpvL091Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
pspvL553Pisum sativum Cameor genome v1aPisum sativum
caipvL0663Cicer arietinum ICC 4958 genome v2Cicer arietinum
crpvL792Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
capvL512Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
capvL760Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ccpvL0626Cajanus cajan Asha genome v1.0Cajanus cajan
ccpvL1338Cajanus cajan Asha genome v1.0Cajanus cajan
anpvL0882Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
aspvL651Vigna angularis Jingnong 6 genome v1.1Vigna angularis
canpvL493Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
canpvL728Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
avjpvL216Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjpvL637Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
carpvL479Cicer arietinum
carpvL757Cicer arietinum
ccapvL230Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccapvL425Cajanus cajan cv. Asha genome v2.0Cajanus cajan

Orthologs
Gene/TranscriptAssemblySpecies
rna-TanjilR_32923Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Cc_v2.0_06775.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan
LR48_mrnaVigan04g206900Vigna angularis Jingnong 6 genome v1.1Vigna angularis
rna-KK1_000324Cajanus cajan Asha genome v1.0Cajanus cajan
Psat5g020320.1Pisum sativum Cameor genome v1aPisum sativum
Ca_05020Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
Va04G060400.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
Cc_v2.0_25421.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan
rna-XM_004510244.2Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
Ca_23318Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
Va11G002530.2Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
rna-KK1_035618Cajanus cajan Asha genome v1.0Cajanus cajan
rna-XM_004501045.3Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
Ca_14708.1Cicer arietinum ICC 4958 genome v2Cicer arietinum
Cr_17532.1Cicer reticulatum L. PI489777 genome v1Cicer reticulatum

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
Phvul.010G145800.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Phvul.009G111400Phvul.009G111400_Pv_G19833_v2.1Phaseolus vulgarisgene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Phvul.009G111400.1Phvul.009G111400.1_Pv_G19833_v2.1-proteinPhaseolus vulgarispolypeptide
Phvul.009G111400.1_Pv_G19833_v2.1Phvul.009G111400.1_Pv_G19833_v2.1Phaseolus vulgarispolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Phvul.009G111400.1.v2.1.CDS.9Phvul.009G111400.1.v2.1.CDS.9_Pv_G19833_v2.1Phaseolus vulgarisCDS
Phvul.009G111400.1.v2.1.CDS.8Phvul.009G111400.1.v2.1.CDS.8_Pv_G19833_v2.1Phaseolus vulgarisCDS
Phvul.009G111400.1.v2.1.CDS.7Phvul.009G111400.1.v2.1.CDS.7_Pv_G19833_v2.1Phaseolus vulgarisCDS
Phvul.009G111400.1.v2.1.CDS.6Phvul.009G111400.1.v2.1.CDS.6_Pv_G19833_v2.1Phaseolus vulgarisCDS
Phvul.009G111400.1.v2.1.CDS.5Phvul.009G111400.1.v2.1.CDS.5_Pv_G19833_v2.1Phaseolus vulgarisCDS
Phvul.009G111400.1.v2.1.CDS.4Phvul.009G111400.1.v2.1.CDS.4_Pv_G19833_v2.1Phaseolus vulgarisCDS
Phvul.009G111400.1.v2.1.CDS.3Phvul.009G111400.1.v2.1.CDS.3_Pv_G19833_v2.1Phaseolus vulgarisCDS
Phvul.009G111400.1.v2.1.CDS.2Phvul.009G111400.1.v2.1.CDS.2_Pv_G19833_v2.1Phaseolus vulgarisCDS
Phvul.009G111400.1.v2.1.CDS.1Phvul.009G111400.1.v2.1.CDS.1_Pv_G19833_v2.1Phaseolus vulgarisCDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Phvul.009G111400.1.v2.1.three_prime_UTR.1Phvul.009G111400.1.v2.1.three_prime_UTR.1_Pv_G19833_v2.1Phaseolus vulgaristhree_prime_UTR


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Phvul.009G111400.1.v2.1.five_prime_UTR.1Phvul.009G111400.1.v2.1.five_prime_UTR.1_Pv_G19833_v2.1Phaseolus vulgarisfive_prime_UTR


Homology
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BLAST of Phvul.009G111400.1 vs. DB:Swiss
Match: SHH1_ARATH (Protein SAWADEE HOMEODOMAIN HOMOLOG 1 OS=Arabidopsis thaliana OX=3702 GN=SHH1 PE=1 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 1.246e-64
Identity = 103/245 (42.04%), Postives = 145/245 (59.18%), Query Frame = 1 
Query:   34 FSGFTNAEIEKMENFLKEPKGVSLGREFYQKLAGSFNRSTGRAGKPVIKWTEIEGWFQARLQDLPQVPNSELMIPRCMEEVMQDPS-----------------------------ELEFEARSSKDGAWYDVEAFLAHRFLSTGEAEVQVRFVGFGAEEDEWINIRSSVRQRSIPLENTECSNLNVGDSVLCFQERRDQAIYYDAQIVEIQRRMHDIRGCRCLILIRYDHDNSEEKVRLRRLCRR 681
            F+ FT +EI  MEN  KE    SL ++F Q +A +F+ S  R GK  I W +++ WFQ +L+   Q  +  L  P      + +PS                             +L FEA+S++D AWYDV +FL +R L TGE EV+VRF GF    DEW+N+++SVR+RSIP+E +EC  +NVGD +LCFQER DQA+Y D  ++ I+R +HD   C C+ L+RY+ DN+EE + L R+CRR
Sbjct:   11 FTEFTLSEIVDMENLYKELGDQSLHKDFCQTVASTFSCSVNRNGKSSITWKQVQIWFQEKLKHQSQPKSKTLPSPPLQIHDLSNPSSYASNASNATFVGNSTFVQTRKGKASDLADLAFEAKSARDYAWYDVSSFLTYRVLRTGELEVRVRFSGFDNRHDEWVNVKTSVRERSIPVEPSECGRVNVGDLLLCFQEREDQALYCDGHVLNIKRGIHDHARCNCVFLVRYELDNTEESLGLERICRR 255
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BLAST of Phvul.009G111400.1 vs. DB:Swiss
Match: SHH2_ARATH (Protein SAWADEE HOMEODOMAIN HOMOLOG 2 OS=Arabidopsis thaliana OX=3702 GN=SHH2 PE=2 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 2.518e-64
Identity = 113/261 (43.30%), Postives = 146/261 (55.94%), Query Frame = 1 
Query:   43 FTNAEIEKMENFLKEPKGVSLGREFYQKLAGSFNRSTGRAGKPVIKWTEIEGWFQ-------ARLQDLPQVPNSELM----IPRCMEEVMQ----------------------------------DPSELEFEARSSKDGAWYDVEAFLAHRFLSTGEAEVQVRFVGFGAEEDEWINIRSSVRQRSIPLENTECSNLNVGDSVLCFQERRDQAIYYDAQIVEIQRRMHDIRGCRCLILIRYDHDNSEEKVRLRRLCRRAKS 690
            F   E+ +ME  L +      GR   + LA  F+ S  R GK V+++ +I  WFQ       AR    P   N   M    +P  M  V+Q                                  D S LEFEA+S++DGAWYDV+AFLAHR L  G+ EVQVRF GF  EEDEWIN++  VRQRS+P E +EC  +  GD VLCFQE +DQA+Y+DA +++ QRR HD+RGCRC  L+RY HD SEE V LR++CRR ++
Sbjct:   14 FILPEVTEMEAILLQHNTAMPGRHILEALADKFSESPERKGKVVVQFKQIWNWFQNRRYALRARGNKAPGKLNVSSMPRMDLPNQMRSVIQPLSVPKTTHMTGNLPGMTPAPSGSLVPGVMRSGSDNSYLEFEAKSARDGAWYDVQAFLAHRNLEIGDPEVQVRFAGFEVEEDEWINVKKHVRQRSLPCEASECVAVLAGDLVLCFQEGKDQALYFDAIVLDAQRRRHDVRGCRCRFLVRYSHDQSEEIVPLRKICRRPET 274
The following BLAST results are available for this feature:
BLAST of Phvul.009G111400.1 vs. DB:Swiss
Analysis Date: 2019-10-18 (BLAST: Phaseolus vulgaris G19833 genome v2.1 vs. Swissprot)
Total hits: 2
Match NameE-valueIdentityDescription
SHH1_ARATH1.246e-6442.04Protein SAWADEE HOMEODOMAIN HOMOLOG 1 OS=Arabidops... [more]
SHH2_ARATH2.518e-6443.30Protein SAWADEE HOMEODOMAIN HOMOLOG 2 OS=Arabidops... [more]
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InterPro
Analysis Name: InterProScan: Phaseolus vulgaris G19833 genome v2.1
Date Performed: 2019-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR032001SAWADEE domainPFAMPF16719SAWADEEcoord: 98..225
e-value: 2.2E-42
score: 144.4
NoneNo IPR availableGENE3D2.40.50.40coord: 96..157
e-value: 7.9E-32
score: 111.4
NoneNo IPR availableGENE3D2.30.30.140coord: 158..230
e-value: 1.0E-33
score: 117.0
NoneNo IPR availableCDDcd18977CD_POL_likecoord: 112..145
e-value: 0.00160831
score: 33.6113

Sequences
The following sequences are available for this feature:

protein sequence of Phvul.009G111400.1_Pv_G19833_v2.1

>Phvul.009G111400.1_Pv_G19833_v2.1 ID=Phvul.009G111400.1_Pv_G19833_v2.1; Name=Phvul.009G111400.1_Pv_G19833_v2.1; organism=Phaseolus vulgaris; type=polypeptide; length=231bp
MDRLRPRNREVFSGFTNAEIEKMENFLKEPKGVSLGREFYQKLAGSFNRS
TGRAGKPVIKWTEIEGWFQARLQDLPQVPNSELMIPRCMEEVMQDPSELE
FEARSSKDGAWYDVEAFLAHRFLSTGEAEVQVRFVGFGAEEDEWINIRSS
VRQRSIPLENTECSNLNVGDSVLCFQERRDQAIYYDAQIVEIQRRMHDIR
GCRCLILIRYDHDNSEEKVRLRRLCRRAKS*
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mRNA from alignment at Chr09:17218498..17222110-

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Phvul.009G111400.1_Pv_G19833_v2.1 ID=Phvul.009G111400.1_Pv_G19833_v2.1; Name=Phvul.009G111400.1; organism=Phaseolus vulgaris; type=mRNA; length=3613bp; location=Sequence derived from: Chr09:17218498..17222110- (Phaseolus vulgaris
CAAACAAAATAGAGAGAGAAAAGTTGCTAGGGTTTCACTCCATTTTAGGT
TCCTAGCCGAGAAAGAAATTTAATCTATAGAATTTTGATTTTTGATTGAA
AGAGACGAATTTGAGTTCATGGACCGCTTGCGTCCTCGGAACCGAGAGGT
CTTTTCTGGATTTACAAATGCGGAGGTACTATTATATTATTATAGTTATA
ATTATTATAATTGTTCTATTTTTATTCATGAACTTTTTCTATGTCTTTCC
TTAAAAAATTACCACTTTTAAATGTCATAGTTAGTCTGTTTGGAATGAGT
TTAGTTTGACTATAATTATAAAGATTGTATTGCAGGATGTATTGGTTAAA
AAATGTCATATCATGTCTTTAGGATTTGTATGGAGTCAGTGAGTAGTGAA
CTGATACCTTGTACTGTTATTATCATGTTTCTTGTTGTTACTGAAAATTG
TAGACAAATACCACCAAGACAGTCTAAAAACCTTGATTAGGAACTTCTTT
TTTAAACCTTGGTTATATAGAGTGTTAGAGGGTGTGTTTTAGCATGTCCT
GTTAATGATTTGAACTTGCTGTGCTCTGGCTAACAGATTGAGAAAATGGA
GAATTTCTTGAAGGAACCTAAAGGGGTATCATTGGGCAGAGAATTTTACC
AAAAACTGGCTGGAAGTTTCAAGTGAGTTTTACTTTTCAATATTTTTTTT
CTCTCTTTTCTAGTAAGAAATGAAGTATTGTCACTGAGAAGTGTTGGAGT
GTAATGTTGATGCAGTCGTTCCACTGGTCGTGCTGGGAAGCCTGTCATAA
AATGGACAGAGGTTAATGTTCTTTTTTACTAAATAATATATTTTATTTAC
TTAATGTCCTGTACATGTCCTTGAATACTGCTGTTTTTTGTACTTAGAAC
TTGTTTGTTTTTGTGTTTTTTTGAAGTAGTTTTTAATTGATCCTTTATTT
GGGGAAAATTCTAGATTGAAGGTTGGTTTCAGGCAAGGCTCCAAGACTTA
CCACAAGTCCCTAACAGTGAGTTGATGATTCCTAGATGTATGGAAGGTGA
GTCTTATGGTGGACCTTATGGTTCTTAACATAGTCAGTAGTAGTTATGCT
GCCTTCAAGCATTCAAGTGATCAAGATTAGATGATTCCTATTATATGTGT
GATGCCTCCAGTGTCTATGCTGCCTTCAAGTATGCAAATAGTCATCAAAC
TTTGAATTATTTTATATAATTGTAGTGTCAGAAGTTATGGCTTTTACGCT
GCTTTATTTTATTAGGACATGTTTGGTTGAACAAAATATGAAACTGAAGG
TGATGAAGTAACTCGGCAGTAATGAAGGGAAAATGAAACTGATAATAACA
TTTCCTCCATAAGTTCTTTTTCACTTTCTTTTTTCCTTCTCCTTTTTGGT
ATAATTAGCTGCTACACTTGGTATTTGTTGATATATCTTAGGAAACTCCT
AATAAAATGAGTTTATCTGGTGAGACCGTACCTGAATTGATTGCTTTACA
GAAGTTATGCAAGACCCATCAGAGTTAGAATTCGAAGCAAGATCATCAAA
AGACGGGGCATGGTAAGCATATGCAGATTATTGCAGCTAGCTTAAATTCT
CTTAGTCACATGTGTTTATGAATTATTTTAAATTTTAATGTCACTGAATG
AAAGGTTTCCATATATACCTTTCGGAAGCATTGAAGAAAACTTCATGCAC
ATCTTTCCACCATTATAAACCCACATATGGATTATAATGCTTATTGGCAC
GGTTATTTTGTAGGTCCTTCAATTGTTGATATTTATTATATACCCGTGTC
CCTTGATATGCATTCCATGTTGCTTGAAGTCTTCAATTATGGAATAAACC
TCTAGTTCTTCTTAGATCATACTCACATCTCAGTGATAGTGGAATGGAAA
AACTAATTTAAATATGGACGCACCAATATCTCTTCTGACTATCTTACTAT
TAATTAACTATTGCCGTTATTATTAACATGGAAAGACACATTTTGTGTGC
CATGAATTGTTTTTGTATGTGGCTAAACTTGTTGACATCTTTCTTTTTGC
ATTTGCTCCATTCTATTAACTTGTATAGGAGTTCCCTTATAGATTTTCTT
AAATCAGGAGGCTCTTGTATCTATATAATCCTATTATTTTCCTTCTTCAA
AGTTCTAACACAATTTTTTTTCCTCTTTTTAATAAAGAGACAGTTTTGTG
GTTGCTTGTGGATTGATCCAGATGGATTATTTAAAGGTTTTCTTTCACAC
ACAAACATGTACCTGGACAGTCCCGTCTTTCATCAATTTATGAAATTCTA
CGCTAACTGCTTTCTTTTAATGCTTCTAGGGAAGGATATTTAAAAGTTTA
TCCATCTATACCATACTACTATAATGGTTAACATATTAATCATGGGGCTT
GGTCTCTATTATTCTTTCCCTGCTGAAATATTCTGGGTAGTTTATTTTTT
CCTTTTGGTCGAACCGCACTTTTCCTTCTCTCTTTCACTTTCTGTTTTTG
AAAAAAATAATGATTGACTCTCATAAATTTTACTGATCTGCTGTCAATTG
TAACTCAGAAGGACATTATATTAAGCATAACTGTCTGATCAATTATGTAA
TTTCTAAATACTGTGTAATTGCAGGTATGATGTTGAGGCATTTCTTGCTC
ACAGATTTCTTAGCACAGGGGAAGCTGTAAGTTTCAACAATCATGATGTT
GATCCCTTTGTGTTATAAGAATTGTTAATGGATTGATAAATTGTTTATCC
CCATAGAGTGTACTAAATTTTTCCATCTGAGACACTCTTGCCTTTTGTTA
AAGGAAGTCCAGGTCAGATTTGTTGGATTTGGAGCTGAGGAAGATGAGTG
GATCAATATTAGAAGTTCAGTTCGCCAACGCTCTATCCCATTGGAAAACA
CAGAGTGTTCGAATCTGAACGTTGGAGACTCTGTCCTGTGCTTCCAGGTG
AATTAGGCTGAATATCCTCGCTGAAGTTTTGTTAGTGCATCACTGTAACT
GTATTTAACTTGACAGTTCCAATTGAAATTTAGGAGAGGAGAGATCAAGC
AATTTACTATGATGCTCAGATTGTAGAGATCCAAAGGAGAATGCATGATA
TCAGAGGTTGCAGGTGTCTCATCTTAATAAGATATGACCATGACAACAGT
GAGGTGAATAACATTTCTGCAATTGGATGTGTTAACATTTCCGAGTGTAA
TTTACAAGTATTTGATGCTATGTTTATCATTTCCAGGAAAAGGTTCGATT
GAGAAGACTTTGCCGCAGAGCAAAATCTTAGGTGTATTTGGAATGAATTA
TTTTTGACGTCCCAGGTGAGTTTTCAGGCATTTATCAAACAACCTGGGTG
CAGTAGGAAGCAGCTAGCACTTGACATGGAGTTTTAGTGGGAAACATATT
GAAAATGGTTATAGTCAATTTGTTCTTTTTTTGCTTATCATTACTAGTAG
ATAAAGGGCAGTGGGCAGTCAAAAGACGAGTAAGCTTCAACTATGCTTCA
ATTATGCACACTTACGGTGACTCAATTGTTGAACAGATGTTTTTCTTTTC
ATTATGGTGCGTAAGATAGGTATTATTATTGTTATGTTTTTGGAATTTAA
TGATATGAGAAAA
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Coding sequence (CDS) from alignment at Chr09:17218498..17222110-

>Phvul.009G111400.1_Pv_G19833_v2.1 ID=Phvul.009G111400.1_Pv_G19833_v2.1; Name=Phvul.009G111400.1; organism=Phaseolus vulgaris; type=CDS; length=693bp; location=Sequence derived from: Chr09:17218498..17222110- (Phaseolus vulgaris
ATGGACCGCTTGCGTCCTCGGAACCGAGAGGTCTTTTCTGGATTTACAAA
TGCGGAGATTGAGAAAATGGAGAATTTCTTGAAGGAACCTAAAGGGGTAT
CATTGGGCAGAGAATTTTACCAAAAACTGGCTGGAAGTTTCAATCGTTCC
ACTGGTCGTGCTGGGAAGCCTGTCATAAAATGGACAGAGATTGAAGGTTG
GTTTCAGGCAAGGCTCCAAGACTTACCACAAGTCCCTAACAGTGAGTTGA
TGATTCCTAGATGTATGGAAGAAGTTATGCAAGACCCATCAGAGTTAGAA
TTCGAAGCAAGATCATCAAAAGACGGGGCATGGTATGATGTTGAGGCATT
TCTTGCTCACAGATTTCTTAGCACAGGGGAAGCTGAAGTCCAGGTCAGAT
TTGTTGGATTTGGAGCTGAGGAAGATGAGTGGATCAATATTAGAAGTTCA
GTTCGCCAACGCTCTATCCCATTGGAAAACACAGAGTGTTCGAATCTGAA
CGTTGGAGACTCTGTCCTGTGCTTCCAGGAGAGGAGAGATCAAGCAATTT
ACTATGATGCTCAGATTGTAGAGATCCAAAGGAGAATGCATGATATCAGA
GGTTGCAGGTGTCTCATCTTAATAAGATATGACCATGACAACAGTGAGGA
AAAGGTTCGATTGAGAAGACTTTGCCGCAGAGCAAAATCTTAG
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR032001SAWADEE_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003682chromatin binding