Phvul.009G118300.1

Transcript Overview


Name	Phvul.009G118300.1
Unique Name	Phvul.009G118300.1_Pv_G19833_v2.1
Type	mRNA
Organism	Phaseolus vulgaris (Common bean)

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
Chr09	supercontig	Chr09:18132455..18138882 -	Phaseolus vulgaris G19833 genome v2.1	n/a

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Phaseolus vulgaris G19833 genome v2.1	2019-09-17
InterProScan: Phaseolus vulgaris G19833 genome v2.1	2019-10-18
BLAST: Phaseolus vulgaris G19833 genome v2.1 vs. Swissprot	2019-10-18

Orthologs

Syntenic blocks


Syntentic block	Assembly	Species
pspvL531	Pisum sativum Cameor genome v1a	Pisum sativum
caipvL0626	Cicer arietinum ICC 4958 genome v2	Cicer arietinum
crpvL596	Cicer reticulatum L. PI489777 genome v1	Cicer reticulatum
capvL501	Cicer arietinum CDC Frontier genome v1.0	Cicer arietinum
ccpvL0664	Cajanus cajan Asha genome v1.0	Cajanus cajan
anpvL0392	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
aspvL649	Vigna angularis Jingnong 6 genome v1.1	Vigna angularis
canpvL481	Cicer arietinum CDC Frontier NCBI RefSeq v1	Cicer arietinum
avjpvL640	Vigna angularis cv. Jingnong6 genome v1.7.1	Vigna angularis
carpvL499		Cicer arietinum

Orthologs


Gene/Transcript	Assembly	Species
Psat5g001840.1	Pisum sativum Cameor genome v1a	Pisum sativum
rna-KK1_024461	Cajanus cajan Asha genome v1.0	Cajanus cajan
Cr_14034.1	Cicer reticulatum L. PI489777 genome v1	Cicer reticulatum
Ca_04701	Cicer arietinum CDC Frontier genome v1.0	Cicer arietinum
rna-TanjilR_12288	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
Ca_14404.1	Cicer arietinum ICC 4958 genome v2	Cicer arietinum
LR48_mrnaVigan04g257100	Vigna angularis Jingnong 6 genome v1.1	Vigna angularis
rna-XM_004500662.3	Cicer arietinum CDC Frontier NCBI RefSeq v1	Cicer arietinum
Va04G072840.1	Vigna angularis cv. Jingnong6 genome v1.7.1	Vigna angularis

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Phvul.009G118300	Phvul.009G118300_Pv_G19833_v2.1	Phaseolus vulgaris	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
Phvul.009G118300.1	Phvul.009G118300.1_Pv_G19833_v2.1-protein	Phaseolus vulgaris	polypeptide
Phvul.009G118300.1_Pv_G19833_v2.1	Phvul.009G118300.1_Pv_G19833_v2.1	Phaseolus vulgaris	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
Phvul.009G118300.1.v2.1.CDS.6	Phvul.009G118300.1.v2.1.CDS.6_Pv_G19833_v2.1	Phaseolus vulgaris	CDS
Phvul.009G118300.1.v2.1.CDS.5	Phvul.009G118300.1.v2.1.CDS.5_Pv_G19833_v2.1	Phaseolus vulgaris	CDS
Phvul.009G118300.1.v2.1.CDS.4	Phvul.009G118300.1.v2.1.CDS.4_Pv_G19833_v2.1	Phaseolus vulgaris	CDS
Phvul.009G118300.1.v2.1.CDS.3	Phvul.009G118300.1.v2.1.CDS.3_Pv_G19833_v2.1	Phaseolus vulgaris	CDS
Phvul.009G118300.1.v2.1.CDS.2	Phvul.009G118300.1.v2.1.CDS.2_Pv_G19833_v2.1	Phaseolus vulgaris	CDS
Phvul.009G118300.1.v2.1.CDS.1	Phvul.009G118300.1.v2.1.CDS.1_Pv_G19833_v2.1	Phaseolus vulgaris	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
Phvul.009G118300.1.v2.1.three_prime_UTR.1	Phvul.009G118300.1.v2.1.three_prime_UTR.1_Pv_G19833_v2.1	Phaseolus vulgaris	three_prime_UTR

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
Phvul.009G118300.1.v2.1.five_prime_UTR.1	Phvul.009G118300.1.v2.1.five_prime_UTR.1_Pv_G19833_v2.1	Phaseolus vulgaris	five_prime_UTR

Homology

The following BLAST results are available for this feature:

BLAST of Phvul.009G118300.1 vs.

BLAST of Phvul.009G118300.1 vs.
Analysis Date: 2019-10-18 (BLAST: Phaseolus vulgaris G19833 genome v2.1 vs. Swissprot)
Total hits: 0


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterProScan: Phaseolus vulgaris G19833 genome v2.1
Date Performed: 2019-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..73
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 30..45

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at Chr09:18132455..18138882-
coding sequence from alignment at Chr09:18132455..18138882-

protein sequence of Phvul.009G118300.1_Pv_G19833_v2.1

>Phvul.009G118300.1_Pv_G19833_v2.1 ID=Phvul.009G118300.1_Pv_G19833_v2.1; Name=Phvul.009G118300.1_Pv_G19833_v2.1; organism=Phaseolus vulgaris; type=polypeptide; length=159bp
MLENLQAVPATETAPVVKRYAPPNQRNRSSNRRKSSDRLDRTNSIGSELE
KNQVASSRSVHIPDHGDAGSSNLLNENHYSRFITLEGCSCSAASQLLNDR
WTAAMQSYNNPKDSSDKPVMYSSGASVWTHQQFRHPQQQDFLGELRRQMH
NANPSFTT*

mRNA from alignment at Chr09:18132455..18138882-

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>Phvul.009G118300.1_Pv_G19833_v2.1 ID=Phvul.009G118300.1_Pv_G19833_v2.1; Name=Phvul.009G118300.1; organism=Phaseolus vulgaris; type=mRNA; length=6428bp; location=Sequence derived from: Chr09:18132455..18138882- (Phaseolus vulgaris
ATTATGAATTAGTGACGATATATAAGTTTATGGTAAGAGGAATGTGCTTT
CTCTCTCTTTGAATTCTAATTCAACTCTTCTCTTTCTCTTTCTCTCTGTC
TTCTGTGGAAGACGAGGAAGTAGTAGAAGCAGTTAGAGAAAGATGCTGGA
GAATCTTCAGGCTGTTCCGGCGACGGAAACCGCCCCAGTCGTCAAGCGCT
ATGCTCCTCCCAACCAGAGGTATTTTCTATTATTAATTATATTATTTATT
ACTTCAATTACGTTACCCACTTTCCTTTTCAATTCCTAATATTTCCCATT
CCTTCTTTTGCAGGAACCGTTCTTCCAACAGGCGCAAATCATCTGGTCAG
TTCACTCCTGTTTTTCTTCCAATCAATTGATCCTTTTATATCTATTTCGA
TGTCTCAATCACATGCCTTGTCTTATTTATTACTGCAATTCCAAATGGGT
ATTTAGTAATGTCAAAGAGGTATAGATATAGTCCCTTTTTGCCCAATGAC
CACTAGTCTGCGTCTTTATTTTACTCCTCAACTCGATCCCTTCCTTATTA
GTTGCACACGTCATGTTTGGGCTGCAAATTTCATTTGCTATAGCTCAATT
ACTTCCCTTTTACTGTTTATCTTTTGTCTATAAAATGGGAAGTACTTAAG
TTAAATCCAGTGTTCCTAGTTTGGGATTTTTCCTGATTTCAAATACCATC
CTGTAGTTTCAACTTTATTCCCTAACATATCCATCTTCAGCTCATGGAAG
TGTAAGCATAAAACTAGTCATTTTGAGGAAGCTAACAATAAAAATGACAC
ATTTTACCCCTTTTCGCACATACATGCACCCCTTACCCCTCACACATCGT
CATTCTGTGAAAAAAAGATATAAAAAATGGAATAGGTTGGTTGTATGGTA
ATGGAATGAATCTCAGGAGGAAATTGGACAAAGTTTGAACAACAAGGTGC
GACATTGAAATGGGGACAGACTGCAGGGTGAGGAAATGAATATATGTCAG
ACACAACACGATATATTGAAGTTAGCTTTGCTCACCCTACATATGCATGA
AGTTATACGAGTTTATACAAAGAAAAAGAGCAGGCTTAAGCCTTGTTCAC
TCCTTTTAAACTCTTAATTTTATTGTGTTTATAAAATAACATCAAACACT
AATGATTTTCTTCTGTATATCAAAATATTGTCAATCAAACATTGTTTTGC
TTGAAAAATCTAAAGGCTAGATAGAAATGAATTTTGAAAAGGCCAAATAT
AAACTGAATCACCCCACACATCCCTCCCTGTTGACAATGGACTAATGACA
CCAGTGTTGGCTTCATCCTTCAGGCGTTGTCTTATGGGTGAGGATTTAAA
AGAAATATCACATGAGAATAACTGTCAGTTACCATTGGTTTGCAAAACAT
ATATGGTTAAATTGTTGAAGTTGAGAGGAAGTCTCTATACTTACTTAAGG
TGCTACCGAACTTTACTTTTTTAATTTTAGTGCTATGTTCTCAATTAAGG
TACTTACTATTTACAGTGACTAGAACAAAAATTAAGGAAAGAAAAATATA
ATATTTTTTTCAGTGGCCTTCCTTAATGACAAACCACTAATCTCATTTGC
ATAATTCAAACTGAGCAATGGCAAAAGCTTTAGGCACATTTTCTGTTAGT
CCCCATTTTAGTTGGTTTGTTTCTAATTTCTAGTTGTTTGGTTTTAATTA
ACTTATGTAGATCGTCTTGATCGGACAAACAGTATTGGGAGTGAGTTAGA
AAAGAATCAAGTTGCTTCTTCAAGAAGTGTTCACATTCCAGATCACGGAG
ATGCTGGTAGCAGTAATCTTCTTAACGAAAACCACTATTCAAGATTCATA
ACTTTAGAAGGGTGTAGTTGCAGTGCAGCTTCCCAGCTTCTCAATGATCG
TAAGTGTATCCCAAACTTTGCTTGAAGAACTTGCATATATTGAGAAACTG
AATATTCTTTCACTCTGATATTTTCTTATAATCTTACTAGAAACGTTGCT
GTTAGTCTGTCCGTGGCAAATGACAATTGCTTTCAATTAGTAAGCATCGG
TTTGACATCTGCAGATTTTTGGGGCATATGAAACATATGGTTTGGTTTCA
ATGAGCTTGTTGGTGGAATGGGGATGCCTAAGGCCCTCTTTTAGTTTTAT
CTAATCTGGTTTATGTTCACCTATTCCTGTTGGAGTCCAGAACTGTTAGT
TTGCATTCCATTGATTTGTTTCAGACTCATCCTCAGTAAAAGCAGGTTGA
GCAATTATAGTCAGGAGAATTTAGTGAATAACTAAGTGCAAGGTTGCTAG
TAGCAGTTAGGCCAACAGGAAGTAGGAAATAATGTAAAAAGAGGTGATAG
AGGGAGTAAGGAGGATATTGTGTATGCAAGAAAACTGAGAGTCGGCACAG
CCTTTAGGTCTGTCAAAAACCAGGAAGTGTCATTAGGAGAGAATTCAGAC
CCTTGTATACACTAGTCCTCAGATCAATTATCACATTCATATCATTTAAG
GCATTCATTTTGTCATCAAATTTCCTACCTCTGTTGAGAATAATTTTTGT
TGTGTTATTATTCTTACTATTGTACTACTATGTTTCCTAATTTCCTTTTA
CTGAGCAGACATGTATATCATGTCATGATAAAACAAAATCCAAAATTAAA
GAAATTCATGACATGATAAATAACAAGTAAAAGTTTTTACACACACAATC
ACCATCCATCTAGGAGCAATAGGAACACAGTATTGAAGTCAAAGAATGAA
AGTTGATTGTGAAACTGGAATATTATCACTAGTTATTTTCAGAAAAAGTT
GTGTTAGTTTAGAGTAACTCAGTCACGGATATGTTTGCTCCCCTACTTTT
ACCATAGGTTGCAAGTAGGATTCTGCATCAAGATCCATGACTCGATCATA
ATTGAATGTTCATAACTACTTTGTATTAGAGCTATGTTAATTGACAGAGG
GAATTTAGCAGCAAAGTTAGATGACTTCATGGAGTACCCGTATGTTAGGC
AACATGCTATTGAAGAAACAAACAATGGTAATTAAGGACATATCAGAGGT
TCAAAAATAGAAATGAATCACAGCGTGGGATCCATGGTTCCATGATAGCC
TAAAATGGAATTTCCCACTTATGATGACACCAAAGATCCTTAGGATGGTT
GTAACACTGCGATTGACTTTTAACAAATTGCTAAAGGAGACAAGGTGGGA
TTGAATGCATTTCATGTCTTAGGAGAAGTGCAATTATGGTTTTACTAGAT
GAAATAAGAGGAGTCAGAACTGGATTGGATTCACTTCAAGCAATGTTATC
TTATACAATTTGCACCTTTCAGTAATAAATTTCGTGGTGAACTGACCCAT
TTGAAGTACTTGGGTTCTCTAGAAGATTATCAATGTCCAATTCAATCCTT
GCTAGCCTATACCTGCAATCTTAGACCTTACCAACAACTGGATCTTTTTA
CTGCTAGTTTGATAGAAGAGTTAAGGATTGATATTGAACTTCAGCAAACT
AGGTAGGCTTGGCATTGAGATGAATATGGTCAAAGTATTAGAATTGTGCA
AGCAAAGCAGCGCTAACACCATGACATTCTATGGGAAAATTCTTCAATTG
TGCTTCTTTTACCGCCACTCAAACAAGTTAGGAACTAACGAGGAGCCCAT
AAATAAGCTAGATGGAGATAGTATCATAGTAATAAGGGGAAGAATGACTG
AAAGAAGAGCTAAAGGGCATGTGTTACAATTGTGATGAAGTTTAAGTAGT
GGGGGATAAATCTAAAAGGTTGTTTTGAATTCAAGTACCTGAGAAGATGG
TAACCCAGTTGCAGGGAACCTCTTGTTCAACTTTAGACAATTTATCTTGC
GCTGGAGGACCTAGTCGAAAATCGAGGCAAGGAGTAATGAGGTGGACCAC
TATTAGGATTACTACCGTATCTCTTACTAAAATCATGAACTACTTTAGCT
TATTTTGTTTCCTCATATCAATAAGATGTGAAAATCAAATATCAATAAGA
TTTGCAAATCAAGATCTTTGATTTTAGATCCTTAGCATTATTATTTTTAT
TTGCATAATTGGTAGTTTTGATCCTAATAGATAGGGATCTCTTTATTGTT
TGTTTTATCAATTAGGATAATTGTTAGATATTTTATCTCAATTAGAGATA
TTTTGTAGGCTTTTAAAGGGAAAATCTAATTAGAATATTATCTTGATTAA
TTATTTTAAAAAAAACTTGTGTTAGACTAGGAGAACTTTTGTCAAGGATG
ACTTTGCTTCTTAATTTCACTATAGGTTGCAAGAAAGATTCTTTTGTGCC
TAAGACTATGAGTCAATCTTAGGTTCATAGCAACTTTTAGGGAAGTTTCC
CTAGTGATTTGGTGCTTATCAGAAACCTAAACTAGTTCCACATCAAACCA
AATTGTCTAGCCTTGGGGTACATATCGAAGGAAGTGATTCTTCTTGTCTT
GCATCCAATACCTTGGATCTTTAAATCCCAACTCAGTCGGCTTACCTATG
GAATAGCCTTGAGAAAATCTTATTTGCAATACCGTAGTTTCAACCCCTCT
GTAGATTCTAGGAATCCTAACAAAAGAAGAAGCATTGATGGGAAGAAAAT
TGGGTTTGAGTCACCAATGAAGAGATGTGTGCATTGAACAAAAGTAGAAC
ATGGAATACTGTGAAAAACTTGATATAGAAGTCCAGATGGGTGCAAATAG
ATCTACACTATGAAGTATACTCGAAAATTTAGCATTGAGTATCAAGAGAC
ATATGCACCAATGGCAAAAATGCACAATCATAGTAGAGACTTTTTGTTGC
AGACTTGTTGGAAGAATAGTATAGCAGTGACATTGATAAAAGGAAAGCTT
GGATTAATCTATATATTATGTAACTACCTTTGTACAGAATATTCATTGGT
CAATGTTCAGTCTATCTGTTTCCATAACGAATTATTTTCAATTGTCAAGT
CTAAGGCAATGTCAACATTCTCCTAATTTGTTCTGCTTATTATGAATGCG
TGTTTTCCCTTTAGTTCTATGTCTACATGGTTGCATGCCTTTTGTTTCAT
TAGGGTTTTATTGTCCTCAGCATTTTAACCATTCAGCTCTGCGCAACACA
TTAAGTTTATTGGATTGTGAAGAGAAAGGGATGGGTGGGTGAGGCTGGAG
TTTGTTCATTACTTACAAGCCCTTTATGTTTTGCCCATATCCGTGGTTAA
CATTGCCTGTTATCTTTGTTGATCATAAATTTATGTTTTCAGGTTGGACA
GCTGCAATGCAGTCCTACAATAATCCCAAAGATTCATCTGGTTAGTGCAC
AACCATAAAATATTATATTTTTTCCATTTTATGAACACTTGCAAACTTTG
TTTATAGTATTTGATGACTATGAAACTGAAACTTGTTTTGTATGTCTAAG
AAGTTCTCAATGTATTAAATTGAGGTCATCACTGAAACTATATATATGAA
ATTATTCGGACTGATTGCTTGTATCATATAAACCAAAGTAGCTCAAAATC
CTGCTCATGTAATAAATATGCATATTATTTTGTAGCATCTAATTGAAAAA
TTGTTTATTACCAATTGGATAAATCTTGTGTCTTCTAATTGATGATTAGA
TATGAAATGAGTGATCTATGAGATGCTTATGAGTGTTTTGTTATAATCAA
GCAACTAAAAAGTGTTTTCTTACCTTATACACTAGTTAGCAGTGCTTAAA
GGGTTTTTTCTTCTCCTGAACATCTCCACCACACGCTGTATCGGTAATTC
TGTCTTTTGTTTATGATTTTTATTAACATTTTGTTGTCCTGTTGATGCAT
TTCAAGTTGAAGCATCATCCTTTAAACAGTGGCGTTTACTATTTTTGTTT
CTATGTTGCTTTTGGGAATTGGGATCCCTTGTTTTACCATTTTATCACTG
CTGTTGATAAATACAATCAATAATAAATTGTGCTGCATAAGAACTGTTAA
GCATGGGATGAAGTCTGGCTTTTACTTTACGATTTCAGACAAGCCAGTTA
TGTATTCAAGTGGGGCGTCAGTGTGGACTCATCAGCAGTTTAGACATCCT
CAACAGGTAATGACTTTCCCTTACCTTGGCATCACATTTTGTTTCAGGTT
ATGCACCCAGCTGAGTGCTTCTTCCTCTTGTGTGTCACAGCAGGACTTCC
TGGGAGAACTTCGTCGCCAAATGCACAATGCTAATCCTAGTTTCACCACA
TGATGGCTGACTTGGATGCCTTGTCTAATAAAGTTTTTGGAAGAACGTGG
ATTTGCCGACTGCTTTAAGAACACTTCCATACTTAAGCTACTTCTTGTTT
TTGTCAAACTCATTACTAATACATGTAATGTAACTGAATTTCAGATCATC
CACCATGCCTCTGTTTGTGTAAATTGGGATGTCGCACATTCAGGATTCCT
ATTTAAAGATTTATTCTGTATTCTTTCA

Coding sequence (CDS) from alignment at Chr09:18132455..18138882-

>Phvul.009G118300.1_Pv_G19833_v2.1 ID=Phvul.009G118300.1_Pv_G19833_v2.1; Name=Phvul.009G118300.1; organism=Phaseolus vulgaris; type=CDS; length=477bp; location=Sequence derived from: Chr09:18132455..18138882- (Phaseolus vulgaris
ATGCTGGAGAATCTTCAGGCTGTTCCGGCGACGGAAACCGCCCCAGTCGT
CAAGCGCTATGCTCCTCCCAACCAGAGGAACCGTTCTTCCAACAGGCGCA
AATCATCTGATCGTCTTGATCGGACAAACAGTATTGGGAGTGAGTTAGAA
AAGAATCAAGTTGCTTCTTCAAGAAGTGTTCACATTCCAGATCACGGAGA
TGCTGGTAGCAGTAATCTTCTTAACGAAAACCACTATTCAAGATTCATAA
CTTTAGAAGGGTGTAGTTGCAGTGCAGCTTCCCAGCTTCTCAATGATCGT
TGGACAGCTGCAATGCAGTCCTACAATAATCCCAAAGATTCATCTGACAA
GCCAGTTATGTATTCAAGTGGGGCGTCAGTGTGGACTCATCAGCAGTTTA
GACATCCTCAACAGCAGGACTTCCTGGGAGAACTTCGTCGCCAAATGCAC
AATGCTAATCCTAGTTTCACCACATGA

Search form

Phvul.009G118300.1