rna-TanjilR_04285
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Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Homology
BLAST of rna-TanjilR_04285 vs. DB:Swiss
Match: NDX_ARATH (Nodulin homeobox OS=Arabidopsis thaliana OX=3702 GN=NDX PE=2 SV=1) HSP 1 Score: 99.3673 bits (246), Expect = 3.223e-19 Identity = 49/94 (52.13%), Postives = 66/94 (70.21%), Query Frame = 2 Query: 3947 VLTAVISLSHGDFLSFWCSSSLPETEEDATLEYDIFAAVGWVLDNTSLDIRTTTNLEFNL-IPNSMPKASYAHHRTSLFVKFFANLHCFVPSIC 4225
VL+AV LSHGDFLS CSS L E+DA ++YD+F + GW+L S ++ T +F L + N++ +SYAH RTSLF+K ANLHCFVP++C
Sbjct: 373 VLSAVFCLSHGDFLSMLCSSDLSSREDDANVDYDLFKSAGWILSVFSSSGQSVTP-QFKLSLQNNLTMSSYAHQRTSLFIKMIANLHCFVPNVC 465 HSP 2 Score: 85.1149 bits (209), Expect = 1.371e-15 Identity = 52/104 (50.00%), Postives = 71/104 (68.27%), Query Frame = 2 Query: 6536 DKDAQNIETSGSDTSSAKGKNVMDHTDNGELSKS-NELLKKARVEENPDDEKVETV-----QRRKRKRNIMNDKQVSLIETALLDEPDMHRNSASLQSWADKLS 6829
D DA N+ETSGSDTSS +GK +++ GEL ++ ++ K + E +DEK ET Q++KRKR+IMN Q+ +IE AL +EPD+ RNSAS Q WADK+S
Sbjct: 638 DADASNLETSGSDTSSNRGKGLVEE---GELVQNMSKRFKGSASGEVKEDEKSETFLVFEKQKKKRKRSIMNADQMGMIEKALAEEPDLQRNSASRQLWADKIS 738 HSP 3 Score: 23.0978 bits (48), Expect = 1.371e-15 Identity = 11/14 (78.57%), Postives = 12/14 (85.71%), Query Frame = 3 Query: 6915 QGSEV-TPSQLKNW 6953
+GSEV T SQLKNW
Sbjct: 740 KGSEVITSSQLKNW 753 HSP 4 Score: 66.2402 bits (160), Expect = 1.748e-13 Identity = 29/55 (52.73%), Postives = 44/55 (80.00%), Query Frame = 2 Query: 362 QIDMEKLVRSLPLHLIAVLISSDRDEATFRYLLCGIRLLHSFCDLASRNSKVDQV 526
+I +EK+V+ LP HLIAV+++ ++D + RY+LCGIRLL + CDL RN+K++QV
Sbjct: 48 KISVEKMVKMLPRHLIAVVMTPNKDGKS-RYILCGIRLLQTLCDLTPRNAKLEQV 101 HSP 5 Score: 35.039 bits (79), Expect = 1.748e-13 Identity = 17/45 (37.78%), Postives = 30/45 (66.67%), Query Frame = 3 Query: 144 LQEIGMIQAVKEMHRLSSLDLTKLLRDSENFTIHYLTEKGLLLKV 278
LQ M+QAV +H +S++ KLL+D+ +F+I + +E+ L K+
Sbjct: 5 LQPKHMVQAVNALHWRNSVEFHKLLKDNGDFSICFNSEQVLPQKI 49 HSP 6 Score: 75.8702 bits (185), Expect = 4.490e-12 Identity = 54/161 (33.54%), Postives = 80/161 (49.69%), Query Frame = 3 Query: 7851 LNNRKARLARTAKD----------------PGDASH-AKKDLLCLTRIASADTPEPSLSGSVNVGSQESGIRKSAGKSVMLIGGQGEDVGNGKVFQVRGNWYGKSLDETGTCVVEATELK--VDKAFRL-PYPSEATGTSFAEAESKLGVMRVLWDLQRLH 8273
LNNRKA+LAR K PGD + +K + +TP+ + S E GI++ G+ V L+ +G+++G G V + G W G SL+ CVV+ EL D + ++ PY S+ G +F EA S+ GVMRV WD+ +L
Sbjct: 754 LNNRKAKLARANKQTGPAHDNNSSGDLPESPGDENTWQQKPSTPIKDQTVTETPKTGENLMRTSSSSEEGIKQ--GQQVRLMDERGDEIGKGTVLRTDGEWNGLSLETRQICVVDVMELSESYDGSKKMIPYGSDDVGRTFTEANSRFGVMRVAWDVNKLQ 912 HSP 7 Score: 62.003 bits (149), Expect = 9.661e-8 Identity = 32/74 (43.24%), Postives = 46/74 (62.16%), Query Frame = 1 Query: 1621 QVEIFIDAAIGSVRMVVRCLEITLVAYDKDFSMEPNLTVERVVYYLCQQCEASLQYLQSLCQQKLFKERLLKNK 1842
+V++FID+A G+V VV L+ L+ D + + V + CQQ EA+LQ+L SLCQ K F+ER+ KNK
Sbjct: 171 RVDVFIDSAFGAVLNVVISLKAKLLYRQTDSPKKLGASSVEEVNFHCQQAEAALQFLHSLCQHKPFRERVAKNK 244 The following BLAST results are available for this feature:
BLAST of rna-TanjilR_04285 vs. DB:Swiss
Analysis Date: 2020-01-28 (BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot) Total hits: 1 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterProScan: L. angustifolius cv. Tanjil genome v1.0
Date Performed: 2020-01-28 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >rna-TanjilR_04285_La_Tanjil_v1.0 ID=rna-TanjilR_04285_La_Tanjil_v1.0; Name=rna-TanjilR_04285; organism=Lupinus angustifolius; type=mRNA; length=8291bpback to top protein sequence of rna-TanjilR_04285_La_Tanjil_v1.0 >rna-TanjilR_04285_La_Tanjil_v1.0 ID=rna-TanjilR_04285_La_Tanjil_v1.0; Name=rna-TanjilR_04285_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=916bpback to top mRNA from alignment at Chr_LG03-CM007363.1:418084..426374- Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below.>rna-TanjilR_04285_La_Tanjil_v1.0 ID=rna-TanjilR_04285_La_Tanjil_v1.0; Name=rna-TanjilR_04285; organism=Lupinus angustifolius; type=mRNA; length=8291bp; location=Sequence derived from: Chr_LG03-CM007363.1:418084..426374- (Lupinus angustifoliusback to top Coding sequence (CDS) from alignment at Chr_LG03-CM007363.1:418084..426374- >rna-TanjilR_04285_La_Tanjil_v1.0 ID=rna-TanjilR_04285_La_Tanjil_v1.0; Name=rna-TanjilR_04285; organism=Lupinus angustifolius; type=CDS; length=2751bp; location=Sequence derived from: Chr_LG03-CM007363.1:418084..426374- (Lupinus angustifoliusback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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