rna-TanjilR_01307
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Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Homology
BLAST of rna-TanjilR_01307 vs. DB:Swiss
Match: CET2_TOBAC (CEN-like protein 2 OS=Nicotiana tabacum OX=4097 GN=CET2 PE=2 SV=1) HSP 1 Score: 112.849 bits (281), Expect = 1.211e-32 Identity = 49/65 (75.38%), Postives = 60/65 (92.31%), Query Frame = 1
Query: 19 SDPLAIGRVIGDVVDYFTPNVKMSVTYNHNKQVYNGFEFFPSSVSTKPKVQVHGGDMRSFFTLVL 213
SDPL IGRVIG+VVDYFTP+VKMSVTYN +K VYNG E FPSSV++KP+V+VHGGD+RSFFT+++
Sbjct: 6 SDPLVIGRVIGEVVDYFTPSVKMSVTYNSSKHVYNGHELFPSSVTSKPRVEVHGGDLRSFFTMIM 70 HSP 2 Score: 49.6766 bits (117), Expect = 1.211e-32 Identity = 20/26 (76.92%), Postives = 22/26 (84.62%), Query Frame = 3
Query: 294 FFQVMTDPDVPGPSDPYLREHLHWYL 371
F +M DPDVPGPSDPYLREHLHW +
Sbjct: 66 FTMIMIDPDVPGPSDPYLREHLHWIV 91 HSP 3 Score: 113.235 bits (282), Expect = 1.341e-28 Identity = 56/73 (76.71%), Postives = 58/73 (79.45%), Query Frame = 1
Query: 982 GKEVVKYEMPRPNIGIHRFVFLLFKQKGRQTVNKIPSSMDLFNARNFAHVNDLGPPVAAVFFNAQRETAARNR 1200
GKE+V YEMPRPNIGIHRFVFLLFKQK RQTV P S D FN R FA N+LG PVAAVFFN QRETAAR R
Sbjct: 103 GKEIVGYEMPRPNIGIHRFVFLLFKQKKRQTVLTAPLSRDRFNTRKFAEENELGSPVAAVFFNCQRETAARRR 175
BLAST of rna-TanjilR_01307 vs. DB:Swiss
Match: CET4_TOBAC (CEN-like protein 4 OS=Nicotiana tabacum OX=4097 GN=CET4 PE=2 SV=1) HSP 1 Score: 112.079 bits (279), Expect = 2.929e-32 Identity = 50/65 (76.92%), Postives = 60/65 (92.31%), Query Frame = 1
Query: 19 SDPLAIGRVIGDVVDYFTPNVKMSVTYNHNKQVYNGFEFFPSSVSTKPKVQVHGGDMRSFFTLVL 213
SDPL IGRVIG+VVDYFTP+VKMSVTYN +K VYNG E FPSSV++KP+V+VHGGD+RSFFTL++
Sbjct: 6 SDPLVIGRVIGEVVDYFTPSVKMSVTYNSSKHVYNGHELFPSSVTSKPRVEVHGGDLRSFFTLIM 70 HSP 2 Score: 48.9062 bits (115), Expect = 2.929e-32 Identity = 20/26 (76.92%), Postives = 22/26 (84.62%), Query Frame = 3
Query: 294 FFQVMTDPDVPGPSDPYLREHLHWYL 371
F +M DPDVPGPSDPYLREHLHW +
Sbjct: 66 FTLIMIDPDVPGPSDPYLREHLHWIV 91 HSP 3 Score: 113.235 bits (282), Expect = 1.665e-28 Identity = 52/73 (71.23%), Postives = 57/73 (78.08%), Query Frame = 1
Query: 982 GKEVVKYEMPRPNIGIHRFVFLLFKQKGRQTVNKIPSSMDLFNARNFAHVNDLGPPVAAVFFNAQRETAARNR 1200
G+E+V YEMPRPNIGIHRFVFLLFKQK RQT+ P S D FN R F+ N+LG PVAA FFN QRETAAR R
Sbjct: 103 GREIVGYEMPRPNIGIHRFVFLLFKQKKRQTLLSAPLSRDRFNTRKFSEENELGSPVAAAFFNCQRETAARRR 175
BLAST of rna-TanjilR_01307 vs. DB:Swiss
Match: SELFP_SOLLC (Protein SELF-PRUNING OS=Solanum lycopersicum OX=4081 GN=SP PE=2 SV=1) HSP 1 Score: 111.694 bits (278), Expect = 4.108e-32 Identity = 51/71 (71.83%), Postives = 62/71 (87.32%), Query Frame = 1
Query: 1 MAVNMKSDPLAIGRVIGDVVDYFTPNVKMSVTYNHNKQVYNGFEFFPSSVSTKPKVQVHGGDMRSFFTLVL 213
MA M +PL IGRVIG+VVDYF P+VKMSV YN+NK VYNG EFFPSSV++KP+V+VHGGD+RSFFTL++
Sbjct: 1 MASKM-CEPLVIGRVIGEVVDYFCPSVKMSVVYNNNKHVYNGHEFFPSSVTSKPRVEVHGGDLRSFFTLIM 70 HSP 2 Score: 48.9062 bits (115), Expect = 4.108e-32 Identity = 20/26 (76.92%), Postives = 22/26 (84.62%), Query Frame = 3
Query: 294 FFQVMTDPDVPGPSDPYLREHLHWYL 371
F +M DPDVPGPSDPYLREHLHW +
Sbjct: 66 FTLIMIDPDVPGPSDPYLREHLHWIV 91 HSP 3 Score: 112.079 bits (279), Expect = 4.169e-28 Identity = 53/73 (72.60%), Postives = 60/73 (82.19%), Query Frame = 1
Query: 982 GKEVVKYEMPRPNIGIHRFVFLLFKQKGRQTVNKIPSSMDLFNARNFAHVNDLGPPVAAVFFNAQRETAARNR 1200
G+EVV YEMPRPNIGIHRFVFLLFKQK RQT++ P S D F++R F+ N+LG PVAAVFFN QRETAAR R
Sbjct: 103 GREVVGYEMPRPNIGIHRFVFLLFKQKKRQTISSAPVSRDQFSSRKFSEENELGSPVAAVFFNCQRETAARRR 175
BLAST of rna-TanjilR_01307 vs. DB:Swiss
Match: CEN_ANTMA (Protein CENTRORADIALIS OS=Antirrhinum majus OX=4151 GN=CEN PE=1 SV=1) HSP 1 Score: 104.375 bits (259), Expect = 1.170e-30 Identity = 50/74 (67.57%), Postives = 59/74 (79.73%), Query Frame = 1
Query: 1 MAVNMKSDPLAIGRVIGDVVDYFTPNVKMSVTYNHN---KQVYNGFEFFPSSVSTKPKVQVHGGDMRSFFTLVL 213
MA + SDPL IGRVIGDVVD+FT VKMSV YN N K VYNG E FPS+V++ P+V+VHGGDMRSFFTL++
Sbjct: 1 MAAKVSSDPLVIGRVIGDVVDHFTSTVKMSVIYNSNNSIKHVYNGHELFPSAVTSTPRVEVHGGDMRSFFTLIM 74 HSP 2 Score: 51.6026 bits (122), Expect = 1.170e-30 Identity = 21/26 (80.77%), Postives = 23/26 (88.46%), Query Frame = 3
Query: 294 FFQVMTDPDVPGPSDPYLREHLHWYL 371
F +MTDPDVPGPSDPYLREHLHW +
Sbjct: 70 FTLIMTDPDVPGPSDPYLREHLHWIV 95 HSP 3 Score: 102.064 bits (253), Expect = 2.308e-24 Identity = 52/75 (69.33%), Postives = 53/75 (70.67%), Query Frame = 1
Query: 982 GKEVVKYEMPRPNIGIHRFVFLLFKQKGRQTVNKIPS--SMDLFNARNFAHVNDLGPPVAAVFFNAQRETAARNR 1200
GKEVV YEMPRPNIGIHRFVFLLFKQK R P D FN R F N+LG PVAAVFFN QRETAAR R
Sbjct: 107 GKEVVSYEMPRPNIGIHRFVFLLFKQKKRGQAMLSPPVVCRDGFNTRKFTQENELGLPVAAVFFNCQRETAARRR 181
BLAST of rna-TanjilR_01307 vs. DB:Swiss
Match: CEN_ARATH (Protein CENTRORADIALIS-like OS=Arabidopsis thaliana OX=3702 GN=CEN PE=2 SV=1) HSP 1 Score: 102.449 bits (254), Expect = 4.422e-30 Identity = 48/68 (70.59%), Postives = 55/68 (80.88%), Query Frame = 1
Query: 13 MKSDPLAIGRVIGDVVDYFTPNVKMSVTYNHNKQVYNGFEFFPSSVSTKPKVQVHGGDMRSFFTLVLN 216
+ SDPL +GRVIGDVVD VKM+VTYN +KQVYNG E FPS V+ KPKV+VHGGDMRSFFTLV+
Sbjct: 4 ISSDPLMVGRVIGDVVDNCLQAVKMTVTYNSDKQVYNGHELFPSVVTYKPKVEVHGGDMRSFFTLVMT 71 HSP 2 Score: 51.6026 bits (122), Expect = 4.422e-30 Identity = 22/26 (84.62%), Postives = 23/26 (88.46%), Query Frame = 3
Query: 294 FFQVMTDPDVPGPSDPYLREHLHWYL 371
F VMTDPDVPGPSDPYLREHLHW +
Sbjct: 66 FTLVMTDPDVPGPSDPYLREHLHWIV 91 HSP 3 Score: 112.464 bits (280), Expect = 3.499e-28 Identity = 53/73 (72.60%), Postives = 58/73 (79.45%), Query Frame = 1
Query: 982 GKEVVKYEMPRPNIGIHRFVFLLFKQKGRQTVNKIPSSMDLFNARNFAHVNDLGPPVAAVFFNAQRETAARNR 1200
GKE++ YEMPRPNIGIHRFV+LLFKQ R +V +PS D FN R FAH NDLG PVAAVFFN QRETAAR R
Sbjct: 103 GKEIIGYEMPRPNIGIHRFVYLLFKQTRRGSVVSVPSYRDQFNTREFAHENDLGLPVAAVFFNCQRETAARRR 175
BLAST of rna-TanjilR_01307 vs. DB:Swiss
Match: TFL1_ARATH (Protein TERMINAL FLOWER 1 OS=Arabidopsis thaliana OX=3702 GN=TFL1 PE=1 SV=1) HSP 1 Score: 96.6709 bits (239), Expect = 5.095e-27 Identity = 43/64 (67.19%), Postives = 56/64 (87.50%), Query Frame = 1
Query: 22 DPLAIGRVIGDVVDYFTPNVKMSVTYNHNKQVYNGFEFFPSSVSTKPKVQVHGGDMRSFFTLVL 213
+PL +GRV+GDV+D+FTP KM+V+YN KQV NG E FPSSVS+KP+V++HGGD+RSFFTLV+
Sbjct: 10 EPLIMGRVVGDVLDFFTPTTKMNVSYN-KKQVSNGHELFPSSVSSKPRVEIHGGDLRSFFTLVM 72 HSP 2 Score: 46.9802 bits (110), Expect = 5.095e-27 Identity = 19/26 (73.08%), Postives = 22/26 (84.62%), Query Frame = 3
Query: 294 FFQVMTDPDVPGPSDPYLREHLHWYL 371
F VM DPDVPGPSDP+L+EHLHW +
Sbjct: 68 FTLVMIDPDVPGPSDPFLKEHLHWIV 93 HSP 3 Score: 97.4413 bits (241), Expect = 1.147e-22 Identity = 50/73 (68.49%), Postives = 56/73 (76.71%), Query Frame = 1
Query: 982 GKEVVKYEMPRPNIGIHRFVFLLFKQKGRQTVNKIPSSMDLFNARNFAHVNDLGPPVAAVFFNAQRETAARNR 1200
GKEVV YE+PRP+IGIHRFVF+LF+QK R+ + S D FN R FA DLG PVAAVFFNAQRETAAR R
Sbjct: 105 GKEVVSYELPRPSIGIHRFVFVLFRQKQRRVIFPNIPSRDHFNTRKFAVEYDLGLPVAAVFFNAQRETAARKR 177
BLAST of rna-TanjilR_01307 vs. DB:Swiss
Match: CET1_TOBAC (CEN-like protein 1 OS=Nicotiana tabacum OX=4097 GN=CET1 PE=2 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 1.923e-23 Identity = 33/65 (50.77%), Postives = 50/65 (76.92%), Query Frame = 1
Query: 22 DPLAIGRVIGDVVDYFTPNVKMSVTYNHNKQVYNGFEFFPSSVSTKPKVQVHGGDMRSFFTLVLN 216
+PL + RVIG+VVD F P+VK++V YN +KQV+NG E P+ ++ KP+V++ G DMRS +TL++
Sbjct: 7 EPLVVARVIGEVVDSFNPSVKLNVIYNGSKQVFNGHELMPAVIAAKPRVEIGGEDMRSAYTLIMT 71 HSP 2 Score: 51.2174 bits (121), Expect = 1.923e-23 Identity = 20/23 (86.96%), Postives = 22/23 (95.65%), Query Frame = 3
Query: 303 VMTDPDVPGPSDPYLREHLHWYL 371
+MTDPDVPGPSDPYLREHLHW +
Sbjct: 69 IMTDPDVPGPSDPYLREHLHWIV 91 HSP 3 Score: 94.7449 bits (234), Expect = 9.914e-22 Identity = 46/73 (63.01%), Postives = 55/73 (75.34%), Query Frame = 1
Query: 982 GKEVVKYEMPRPNIGIHRFVFLLFKQKGRQTVNKIPSSMDLFNARNFAHVNDLGPPVAAVFFNAQRETAARNR 1200
G+E+V YE P+P IGIHR+V LL+KQ GRQTV K ++ D FN R + N LG PVAAV+FNAQRETAAR R
Sbjct: 103 GREIVSYESPKPVIGIHRYVLLLYKQSGRQTV-KPAATRDHFNTRRYTAENGLGSPVAAVYFNAQRETAARRR 174
BLAST of rna-TanjilR_01307 vs. DB:Swiss
Match: BFT_ARATH (Protein BROTHER of FT and TFL 1 OS=Arabidopsis thaliana OX=3702 GN=BFT PE=3 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 1.562e-19 Identity = 34/64 (53.12%), Postives = 48/64 (75.00%), Query Frame = 1
Query: 22 DPLAIGRVIGDVVDYFTPNVKMSVTYNHNKQVYNGFEFFPSSVSTKPKVQVHGGDMRSFFTLVL 213
+PL +GRVIGDV++ F P+V M VT+N N V NG E PS + +KP+V++ G D+RSFFTL++
Sbjct: 6 EPLIVGRVIGDVLEMFNPSVTMRVTFNSNTIVSNGHELAPSLLLSKPRVEIGGQDLRSFFTLIM 69 HSP 2 Score: 40.817 bits (94), Expect = 1.562e-19 Identity = 15/24 (62.50%), Postives = 19/24 (79.17%), Query Frame = 3
Query: 294 FFQVMTDPDVPGPSDPYLREHLHW 365
F +M DPD P PS+PY+RE+LHW
Sbjct: 65 FTLIMMDPDAPSPSNPYMREYLHW 88 HSP 3 Score: 88.5817 bits (218), Expect = 1.743e-19 Identity = 41/73 (56.16%), Postives = 51/73 (69.86%), Query Frame = 1
Query: 982 GKEVVKYEMPRPNIGIHRFVFLLFKQKGRQTVNKIPSSMDLFNARNFAHVNDLGPPVAAVFFNAQRETAARNR 1200
G+E+V+YE P+P GIHR+VF LFKQ+GRQ V P + + FN F+ L PVAAV+FNAQRETA R R
Sbjct: 102 GREIVRYETPKPVAGIHRYVFALFKQRGRQAVKAAPETRECFNTNAFSSYFGLSQPVAAVYFNAQRETAPRRR 174
BLAST of rna-TanjilR_01307 vs. DB:Swiss
Match: HD3A_ORYSJ (Protein HEADING DATE 3A OS=Oryza sativa subsp. japonica OX=39947 GN=HD3A PE=1 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 1.198e-17 Identity = 40/73 (54.79%), Postives = 51/73 (69.86%), Query Frame = 1
Query: 982 GKEVVKYEMPRPNIGIHRFVFLLFKQKGRQTVNKIPSSMDLFNARNFAHVNDLGPPVAAVFFNAQRETAARNR 1200
G+EV+ YE PRP +GIHR VF+LF+Q GRQTV P FN ++FA + +LG PVAAV+FN QRE + R
Sbjct: 104 GQEVMCYESPRPTMGIHRLVFVLFQQLGRQTVYA-PGWRQNFNTKDFAELYNLGSPVAAVYFNCQREAGSGGR 175 HSP 2 Score: 70.4774 bits (171), Expect = 4.349e-17 Identity = 33/64 (51.56%), Postives = 46/64 (71.88%), Query Frame = 1
Query: 22 DPLAIGRVIGDVVDYFTPNVKMSVTYNHNKQVYNGFEFFPSSVSTKPKVQVHGGDMRSFFTLVL 213
DPL +GRV+GDV+D F + + VTY +K V NG E PS V+ +P+V+V G DMR+F+TLV+
Sbjct: 9 DPLVVGRVVGDVLDAFVRSTNLKVTYG-SKTVSNGCELKPSMVTHQPRVEVGGNDMRTFYTLVM 71 HSP 3 Score: 39.6614 bits (91), Expect = 4.349e-17 Identity = 16/23 (69.57%), Postives = 18/23 (78.26%), Query Frame = 3
Query: 303 VMTDPDVPGPSDPYLREHLHWYL 371
VM DPD P PSDP LRE+LHW +
Sbjct: 70 VMVDPDAPSPSDPNLREYLHWLV 92
BLAST of rna-TanjilR_01307 vs. DB:Swiss
Match: RFT1_ORYSJ (Protein RICE FLOWERING LOCUS T 1 OS=Oryza sativa subsp. japonica OX=39947 GN=RFT1 PE=1 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 1.809e-17 Identity = 40/73 (54.79%), Postives = 50/73 (68.49%), Query Frame = 1
Query: 982 GKEVVKYEMPRPNIGIHRFVFLLFKQKGRQTVNKIPSSMDLFNARNFAHVNDLGPPVAAVFFNAQRETAARNR 1200
G+EV+ YE PRP +GIHR VF+LF+Q GRQTV P F+ RNFA + +LG PVA V+FN QRE + R
Sbjct: 103 GQEVMCYESPRPTMGIHRLVFVLFQQLGRQTVYA-PGWRQNFSTRNFAELYNLGSPVATVYFNCQREAGSGGR 174 HSP 2 Score: 67.0106 bits (162), Expect = 1.021e-15 Identity = 33/71 (46.48%), Postives = 48/71 (67.61%), Query Frame = 1
Query: 1 MAVNMKSDPLAIGRVIGDVVDYFTPNVKMSVTYNHNKQVYNGFEFFPSSVSTKPKVQVHGGDMRSFFTLVL 213
MA + + DPL +GR++GDV+D F +SV+Y + V NG E PS V+ +P+V V G DMR+F+TLV+
Sbjct: 1 MAGSGRDDPLVVGRIVGDVLDPFVRITNLSVSYGA-RIVSNGCELKPSMVTQQPRVVVGGNDMRTFYTLVM 70 HSP 3 Score: 38.5058 bits (88), Expect = 1.021e-15 Identity = 15/23 (65.22%), Postives = 18/23 (78.26%), Query Frame = 3
Query: 303 VMTDPDVPGPSDPYLREHLHWYL 371
VM DPD P PS+P LRE+LHW +
Sbjct: 69 VMVDPDAPSPSNPNLREYLHWLV 91 The following BLAST results are available for this feature:
BLAST of rna-TanjilR_01307 vs. DB:Swiss
Analysis Date: 2020-01-28 (BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot) Total hits: 10
InterPro
Analysis Name: InterProScan: L. angustifolius cv. Tanjil genome v1.0
Date Performed: 2020-01-28
Sequences
The
following sequences are available for this feature:
mRNA sequence >rna-TanjilR_01307_La_Tanjil_v1.0 ID=rna-TanjilR_01307_La_Tanjil_v1.0; Name=rna-TanjilR_01307; organism=Lupinus angustifolius; type=mRNA; length=1203bpback to top protein sequence of rna-TanjilR_01307_La_Tanjil_v1.0 >rna-TanjilR_01307_La_Tanjil_v1.0 ID=rna-TanjilR_01307_La_Tanjil_v1.0; Name=rna-TanjilR_01307_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=176bpback to top mRNA from alignment at Chr_LG06-CM007366.1:29611068..29612270+ Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>rna-TanjilR_01307_La_Tanjil_v1.0 ID=rna-TanjilR_01307_La_Tanjil_v1.0; Name=rna-TanjilR_01307; organism=Lupinus angustifolius; type=mRNA; length=1203bp; location=Sequence derived from: Chr_LG06-CM007366.1:29611068..29612270+ (Lupinus angustifoliusback to top Coding sequence (CDS) from alignment at Chr_LG06-CM007366.1:29611068..29612270+ >rna-TanjilR_01307_La_Tanjil_v1.0 ID=rna-TanjilR_01307_La_Tanjil_v1.0; Name=rna-TanjilR_01307; organism=Lupinus angustifolius; type=CDS; length=531bp; location=Sequence derived from: Chr_LG06-CM007366.1:29611068..29612270+ (Lupinus angustifoliusback to top |