rna-TanjilR_04046

Transcript Overview
Namerna-TanjilR_04046
Unique Namerna-TanjilR_04046_La_Tanjil_v1.0
TypemRNA
OrganismLupinus angustifolius (blue lupin)
Sequence length927
Producthypothetical protein
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr_LG08-CM007368.1supercontigChr_LG08-CM007368.1:10199658..10200584 +Lupinus angustifolius L. Tanjil genome v1.0n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Lupinus angustifolius L. Tanjil genome v1.02019-09-17
InterProScan: L. angustifolius cv. Tanjil genome v1.02020-01-28
BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot2020-01-28
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
ananL552Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anccR1411Cajanus cajan Asha genome v1.0Cajanus cajan
ancaR1122Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ancrR1327Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
anpsR0952Pisum sativum Cameor genome v1aPisum sativum
anpvR1319Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
anvuR1126Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
anasR1241Vigna angularis Jingnong 6 genome v1.1Vigna angularis
anzwsR1092Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
anvfhR1139Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
antifR1131Vicia faba cv. Tiffany genome v1.0Vicia faba
anvuaR1087Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
anvssR1221Vicia sativa cv. Studenica genome v1.0Vicia sativa
ancanR1024Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
anavjR1208Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
ancarR1085Cicer arietinum
anccaR1059Cajanus cajan cv. Asha genome v2.0Cajanus cajan
anvumR1216Vigna umbellata FF25 genome v1.0Vigna umbellata
anvvaR1142Vicia villosa cv. AU Merit genome v1.0Vicia villosa
anvasR1293Vigna angularis cv. Shumari genome v1.a1Vigna angularis
anvstR1287Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
anvunR1086Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
anpvfR1356Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris

Orthologs
Gene/TranscriptAssemblySpecies
Ca_04605Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
LR48_mrnaVigan02g226900Vigna angularis Jingnong 6 genome v1.1Vigna angularis
PvulFLAVERTChr07.1000362Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
Vigan.08G062200.01Vigna angularis cv. Shumari genome v1.a1Vigna angularis
rna-KK1_007732Cajanus cajan Asha genome v1.0Cajanus cajan
Psat6g208440.1Pisum sativum Cameor genome v1aPisum sativum
evm.model.Chr07.494Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
Vigst.08G050300.01Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
Psat06G0564100-T1Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
Vfaba.Hedin2.R1.3g146800.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
XM_058913678.1Vicia villosa cv. AU Merit genome v1.0Vicia villosa
Va02G066800.2Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
rna-NM_001364961.1Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
Phvul.007G056000.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
Vum_08G00510.1Vigna umbellata FF25 genome v1.0Vigna umbellata
jg40868.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Cc_v2.0_04858.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan
Cr_09020.1Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
Vigun07g241000.2Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
Vfaba.Tiffany.R1.3g117320.1Vicia faba cv. Tiffany genome v1.0Vicia faba
Vigun07g241000.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
gene-TanjilG_04046gene-TanjilG_04046_La_Tanjil_v1.0Lupinus angustifoliusgene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna-TanjilR_04046rna-TanjilR_04046_La_Tanjil_v1.0-proteinLupinus angustifoliuspolypeptide
rna-TanjilR_04046_La_Tanjil_v1.0rna-TanjilR_04046_La_Tanjil_v1.0Lupinus angustifoliuspolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
rna-TanjilR_04046_La_Tanjil_v1.0-exon-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:10199658..10199691rna-TanjilR_04046_La_Tanjil_v1.0-exon-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:10199658..10199691Lupinus angustifoliusexon
rna-TanjilR_04046_La_Tanjil_v1.0-exon-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:10199780..10200072rna-TanjilR_04046_La_Tanjil_v1.0-exon-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:10199780..10200072Lupinus angustifoliusexon
rna-TanjilR_04046_La_Tanjil_v1.0-exon-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:10200168..10200584rna-TanjilR_04046_La_Tanjil_v1.0-exon-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:10200168..10200584Lupinus angustifoliusexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
rna-TanjilR_04046_La_Tanjil_v1.0-CDS-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:10199658..10199691rna-TanjilR_04046_La_Tanjil_v1.0-CDS-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:10199658..10199691Lupinus angustifoliusCDS
rna-TanjilR_04046_La_Tanjil_v1.0-CDS-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:10199780..10200072rna-TanjilR_04046_La_Tanjil_v1.0-CDS-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:10199780..10200072Lupinus angustifoliusCDS
rna-TanjilR_04046_La_Tanjil_v1.0-CDS-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:10200168..10200584rna-TanjilR_04046_La_Tanjil_v1.0-CDS-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:10200168..10200584Lupinus angustifoliusCDS


Homology
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BLAST of rna-TanjilR_04046 vs. DB:Swiss
Match: YAI5_SCHPO (Uncharacterized protein C24B11.05 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPAC24B11.05 PE=3 SV=1)

HSP 1 Score: 55.8398 bits (133), Expect = 3.796e-14
Identity = 35/103 (33.98%), Postives = 53/103 (51.46%), Query Frame = 2 
Query:  122 DLDDTLYPGSIGIRECMKKNIEMFLVEKCGFSELKAATLRVELFKTYGSTLAGLRAHGYDVTHQDYHAFVHGSLPYQELIKPDTNLRNLLSSITQRKIVSFVF 430
            DLD+ LYP S  I   M   I  F  +K G    +A  LR   ++ YG  + GL  H +++   DY   V  SLP +++IK D  LR +L  + ++K   ++F
Sbjct:   11 DLDNCLYPKSYKIHNMMAARITAFFSDKLGIPTEEAERLREVYYRHYGIAIRGLVLH-HEIDAVDYDQRVDQSLPLEKVIKKDEVLREMLLEL-RKKYKCWIF 111

HSP 2 Score: 43.5134 bits (101), Expect = 3.796e-14
Identity = 31/94 (32.98%), Postives = 46/94 (48.94%), Query Frame = 1 
Query:  493 NEYMYQIFTNSDRNHAVRVLDCLGIKQCFEQIICFETMNPNISNNFPVLLKPSXXXXXXXXXXXXVVDPRRTLFLDDSPRNIAAAKQIGLQTVV 774
             +Y   IFTN+   HA RVL  LGI+ CF+ I   +       N   ++ KP    +   +  A V D  + +F+DDS  NI  A++ G +  V
Sbjct:  104 KKYKCWIFTNAYIVHANRVLKYLGIEDCFDGITYCDY------NAKDLIAKPMPEMYERVMREAGVTDKDKCIFVDDSYGNILGAREFGWKYTV 191
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BLAST of rna-TanjilR_04046 vs. DB:Swiss
Match: SDT1_YEAST (Suppressor of disruption of TFIIS OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=SDT1 PE=1 SV=1)

HSP 1 Score: 54.6842 bits (130), Expect = 9.977e-13
Identity = 33/105 (31.43%), Postives = 53/105 (50.48%), Query Frame = 2 
Query:  122 DLDDTLYPGSIGIRECMKKNIEMFLVEKCGFSELKAATLRVELFKTYGSTLAGLRAHGYDVTHQDYHAFVHGSLPYQELIKPDTNLRNLLSSITQRKIVSFVFVF 436
            D+D+ LY  S  I + M+++I  F       S   A  L    +K YG  + GL    + V   +Y+  V  SLP Q+++KPD  LRN+L  + Q   +  +++F
Sbjct:   61 DIDNCLYKSSTRIHDLMQQSILRFFQTHLKLSPEDAHVLNNSYYKEYGLAIRGL-VMFHKVNALEYNRLVDDSLPLQDILKPDIPLRNMLLRLRQSGKIDKLWLF 164

HSP 2 Score: 40.4318 bits (93), Expect = 9.977e-13
Identity = 27/89 (30.34%), Postives = 47/89 (52.81%), Query Frame = 1 
Query:  511 IFTNSDRNHAVRVLDCLGIKQCFEQI-ICFETMNPNISNNFPVLLKPSXXXXXXXXXXXXVVDPRRTLFLDDSPRNIAAAKQIGLQTVV 774
            +FTN+ +NHA+R L  LGI   F+ +  C      + S    ++ KP + AF  A+  + +       F+DDS +NI    ++G++T +
Sbjct:  163 LFTNAYKNHAIRCLRLLGIADLFDGLTYC------DYSRTDTLVCKPHVKAFEKAMKESGLARYENAYFIDDSGKNIETGIKLGMKTCI 245
The following BLAST results are available for this feature:
BLAST of rna-TanjilR_04046 vs. DB:Swiss
Analysis Date: 2020-01-28 (BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot)
Total hits: 2
Match NameE-valueIdentityDescription
YAI5_SCHPO3.796e-1433.98Uncharacterized protein C24B11.05 OS=Schizosacchar... [more]
SDT1_YEAST9.977e-1331.43Suppressor of disruption of TFIIS OS=Saccharomyces... [more]
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InterPro
Analysis Name: InterProScan: L. angustifolius cv. Tanjil genome v1.0
Date Performed: 2020-01-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006439HAD hydrolase, subfamily IATIGRFAMTIGR01509TIGR01509coord: 48..198
e-value: 2.0E-12
score: 45.5
IPR023214HAD superfamilyGENE3D3.40.50.1000coord: 8..216
e-value: 1.6E-51
score: 176.9
IPR041492Haloacid dehalogenase-like hydrolasePFAMPF13419HAD_2coord: 9..198
e-value: 2.3E-11
score: 44.1
IPR010237Pyrimidine 5-nucleotidaseTIGRFAMTIGR01993TIGR01993coord: 7..198
e-value: 2.0E-71
score: 237.6
IPR010237Pyrimidine 5-nucleotidaseSFLDSFLDG01132C1.5.3:_5'-Nucleotidase_Likecoord: 4..219
e-value: 0.0
score: 232.5
NoneNo IPR availableGENE3D1.10.150.450coord: 19..89
e-value: 1.6E-51
score: 176.9
NoneNo IPR availableSFLDSFLDS00003Haloacid_Dehalogenasecoord: 4..219
e-value: 0.0
score: 232.5
IPR036412HAD-like superfamilySUPERFAMILY56784HAD-likecoord: 7..217

Sequences
The following sequences are available for this feature:

mRNA sequence

>rna-TanjilR_04046_La_Tanjil_v1.0 ID=rna-TanjilR_04046_La_Tanjil_v1.0; Name=rna-TanjilR_04046; organism=Lupinus angustifolius; type=mRNA; length=927bp
ATGGATTTTTCCACCTTGGACTGCATCATGTTCGGTAAGtgcatctttta
ttttttgtgactGTTGCATAAGTTTTTGTGGACAAATATATTGTATGATA
ATATTATGCGAATAAAAAGCAGATTTGGACGACACGTTGTACCCTGGGAG
CATTGGAATAAGGGAGTGTATGAAGAAAAACATAGAAATGTTTCTAGTTG
AGAAATGCGGATTCTCAGAGTTGAAAGCTGCCACCCTCCGTGTTGAACTC
TTCAAAACCTACGGAAGCACCCTCGCTGGTTTAAGAGCACACGGGTATGA
CGTCACCCATCAAGATTACCATGCTTTCGTACACGGAAGCTTACCTTACC
AAGAGTTGATCAAGCCTGATACTAACTTACGCAACCTCCTCTCCTCCATC
ACCCAAAGGAAAATAGtaagttttgtttttgtttttcttttaattcaatc
atcaattcaattcaattcatcaTCTAAATctaaatctaaatgaatgaATA
CATGTATCAGATATTTACAAACTCAGATAGGAATCACGCGGTGAGGGTGC
TGGATTGTCTTGGTATAAAACAATGTTTCGAACAAATCATATGCTTTGAG
ACAATGAACCCCAACATCTCCAACAACTTCCCTGTTCTCCTCAAACCCTC
GCTCCATGCCTTCAACCTTGCACTCCATGCCGCCAATGTCGTAGATCCAC
GTCGTACGCTGTTCCTGGATGACAGCCCTCGCAACATCGCTGCTGCAAAA
CAAATAGGTCTGCAAACTGTTGTGGTTGGGGTGACAGTTAAATGCAATGG
AGCTGACTATGCTATTCAGAATGTTCATCAAATTTGGACAACTGATAATG
ATCAAAGTAGTAGGATCACACGTAGCAAGAGCGATTTGAATGCTCTCCCA
ATCACCACTGCTACTGTTGGAGCTTAA
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protein sequence of rna-TanjilR_04046_La_Tanjil_v1.0

>rna-TanjilR_04046_La_Tanjil_v1.0 ID=rna-TanjilR_04046_La_Tanjil_v1.0; Name=rna-TanjilR_04046_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=247bp
MDFSTLDCIMFDLDDTLYPGSIGIRECMKKNIEMFLVEKCGFSELKAATL
RVELFKTYGSTLAGLRAHGYDVTHQDYHAFVHGSLPYQELIKPDTNLRNL
LSSITQRKIIFTNSDRNHAVRVLDCLGIKQCFEQIICFETMNPNISNNFP
VLLKPSLHAFNLALHAANVVDPRRTLFLDDSPRNIAAAKQIGLQTVVVGV
TVKCNGADYAIQNVHQIWTTDNDQSSRITRSKSDLNALPITTATVGA
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mRNA from alignment at Chr_LG08-CM007368.1:10199658..10200584+

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna-TanjilR_04046_La_Tanjil_v1.0 ID=rna-TanjilR_04046_La_Tanjil_v1.0; Name=rna-TanjilR_04046; organism=Lupinus angustifolius; type=mRNA; length=927bp; location=Sequence derived from: Chr_LG08-CM007368.1:10199658..10200584+ (Lupinus angustifolius
ATGGATTTTTCCACCTTGGACTGCATCATGTTCGGTAAGtgcatctttta
ttttttgtgactGTTGCATAAGTTTTTGTGGACAAATATATTGTATGATA
ATATTATGCGAATAAAAAGCAGATTTGGACGACACGTTGTACCCTGGGAG
CATTGGAATAAGGGAGTGTATGAAGAAAAACATAGAAATGTTTCTAGTTG
AGAAATGCGGATTCTCAGAGTTGAAAGCTGCCACCCTCCGTGTTGAACTC
TTCAAAACCTACGGAAGCACCCTCGCTGGTTTAAGAGCACACGGGTATGA
CGTCACCCATCAAGATTACCATGCTTTCGTACACGGAAGCTTACCTTACC
AAGAGTTGATCAAGCCTGATACTAACTTACGCAACCTCCTCTCCTCCATC
ACCCAAAGGAAAATAGtaagttttgtttttgtttttcttttaattcaatc
atcaattcaattcaattcatcaTCTAAATctaaatctaaatgaatgaATA
CATGTATCAGATATTTACAAACTCAGATAGGAATCACGCGGTGAGGGTGC
TGGATTGTCTTGGTATAAAACAATGTTTCGAACAAATCATATGCTTTGAG
ACAATGAACCCCAACATCTCCAACAACTTCCCTGTTCTCCTCAAACCCTC
GCTCCATGCCTTCAACCTTGCACTCCATGCCGCCAATGTCGTAGATCCAC
GTCGTACGCTGTTCCTGGATGACAGCCCTCGCAACATCGCTGCTGCAAAA
CAAATAGGTCTGCAAACTGTTGTGGTTGGGGTGACAGTTAAATGCAATGG
AGCTGACTATGCTATTCAGAATGTTCATCAAATTTGGACAACTGATAATG
ATCAAAGTAGTAGGATCACACGTAGCAAGAGCGATTTGAATGCTCTCCCA
ATCACCACTGCTACTGTTGGAGCTTAA
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Coding sequence (CDS) from alignment at Chr_LG08-CM007368.1:10199658..10200584+

>rna-TanjilR_04046_La_Tanjil_v1.0 ID=rna-TanjilR_04046_La_Tanjil_v1.0; Name=rna-TanjilR_04046; organism=Lupinus angustifolius; type=CDS; length=744bp; location=Sequence derived from: Chr_LG08-CM007368.1:10199658..10200584+ (Lupinus angustifolius
ATGGATTTTTCCACCTTGGACTGCATCATGTTCGATTTGGACGACACGTT
GTACCCTGGGAGCATTGGAATAAGGGAGTGTATGAAGAAAAACATAGAAA
TGTTTCTAGTTGAGAAATGCGGATTCTCAGAGTTGAAAGCTGCCACCCTC
CGTGTTGAACTCTTCAAAACCTACGGAAGCACCCTCGCTGGTTTAAGAGC
ACACGGGTATGACGTCACCCATCAAGATTACCATGCTTTCGTACACGGAA
GCTTACCTTACCAAGAGTTGATCAAGCCTGATACTAACTTACGCAACCTC
CTCTCCTCCATCACCCAAAGGAAAATAATATTTACAAACTCAGATAGGAA
TCACGCGGTGAGGGTGCTGGATTGTCTTGGTATAAAACAATGTTTCGAAC
AAATCATATGCTTTGAGACAATGAACCCCAACATCTCCAACAACTTCCCT
GTTCTCCTCAAACCCTCGCTCCATGCCTTCAACCTTGCACTCCATGCCGC
CAATGTCGTAGATCCACGTCGTACGCTGTTCCTGGATGACAGCCCTCGCA
ACATCGCTGCTGCAAAACAAATAGGTCTGCAAACTGTTGTGGTTGGGGTG
ACAGTTAAATGCAATGGAGCTGACTATGCTATTCAGAATGTTCATCAAAT
TTGGACAACTGATAATGATCAAAGTAGTAGGATCACACGTAGCAAGAGCG
ATTTGAATGCTCTCCCAATCACCACTGCTACTGTTGGAGCTTAA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR006439HAD-SF_hydro_IA
IPR023214HAD_sf
IPR041492HAD_2
IPR010237Pyr-5-nucltdase
IPR036412HAD-like_sf
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity