rna-TanjilR_26404

Transcript Overview
Namerna-TanjilR_26404
Unique Namerna-TanjilR_26404_La_Tanjil_v1.0
TypemRNA
OrganismLupinus angustifolius (blue lupin)
Sequence length354
Producthypothetical protein
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr_LG12-CM007372.1supercontigChr_LG12-CM007372.1:18866096..18866449 -Lupinus angustifolius L. Tanjil genome v1.0n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Lupinus angustifolius L. Tanjil genome v1.02019-09-17
InterProScan: L. angustifolius cv. Tanjil genome v1.02020-01-28
BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot2020-01-28
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
ananL015Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ananL016Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ananR207Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ananR208Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ananR218Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancaiR0243Cicer arietinum ICC 4958 genome v2Cicer arietinum
ancaR0215Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ancaiR0291Cicer arietinum ICC 4958 genome v2Cicer arietinum
ancaR0258Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
anccR0262Cajanus cajan Asha genome v1.0Cajanus cajan
anccR0283Cajanus cajan Asha genome v1.0Cajanus cajan
ancrR0246Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
ancrR0304Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
anpsR0187Pisum sativum Cameor genome v1aPisum sativum
anpsR0206Pisum sativum Cameor genome v1aPisum sativum
anpsR0207Pisum sativum Cameor genome v1aPisum sativum
anpvR0272Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
anpvR0282Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
anvuR0223Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
anvuR0231Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
anasR0230Vigna angularis Jingnong 6 genome v1.1Vigna angularis
anasR0240Vigna angularis Jingnong 6 genome v1.1Vigna angularis
anasR0243Vigna angularis Jingnong 6 genome v1.1Vigna angularis
anzwsR0209Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
anzwsR0226Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
antifR0213Vicia faba cv. Tiffany genome v1.0Vicia faba
antifR0238Vicia faba cv. Tiffany genome v1.0Vicia faba
antifR0245Vicia faba cv. Tiffany genome v1.0Vicia faba
anvssR0232Vicia sativa cv. Studenica genome v1.0Vicia sativa
anvssR0280Vicia sativa cv. Studenica genome v1.0Vicia sativa
ancanR0193Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
ancanR0235Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
ancarR0210Cicer arietinum
ancarR0260Cicer arietinum
anccaR0201Cajanus cajan cv. Asha genome v2.0Cajanus cajan
anccaR0222Cajanus cajan cv. Asha genome v2.0Cajanus cajan
anvstR0233Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
anvstR0274Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
anpvfR0269Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
anpvfR0278Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
anvunR0209Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
anvunR0216Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata

Orthologs
Gene/TranscriptAssemblySpecies
Phvul.003G079400.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
Psat01G0489000-T1Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
rna-XM_027336522.1Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
Vigun03g446000.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
Cc_v2.0_28083.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan
Psat04G0017800-T1Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
Cr_22212.1Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
jg20826.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Vigun03g446000.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
Ca_22056.1Cicer arietinum ICC 4958 genome v2Cicer arietinum
PvulFLAVERTChr03.1000480Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
jg39022.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Vigst.01G385900.01Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
Vfaba.Tiffany.R1.4g177480.1Vicia faba cv. Tiffany genome v1.0Vicia faba
Psat4g006560.1Pisum sativum Cameor genome v1aPisum sativum
rna-KK1_004539Cajanus cajan Asha genome v1.0Cajanus cajan
Ca_03377Cicer arietinum CDC Frontier genome v1.0Cicer arietinum

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
rna-TanjilR_27314Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
gene-TanjilG_26404gene-TanjilG_26404_La_Tanjil_v1.0Lupinus angustifoliusgene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna-TanjilR_26404rna-TanjilR_26404_La_Tanjil_v1.0-proteinLupinus angustifoliuspolypeptide
rna-TanjilR_26404_La_Tanjil_v1.0rna-TanjilR_26404_La_Tanjil_v1.0Lupinus angustifoliuspolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
rna-TanjilR_26404_La_Tanjil_v1.0-CDS-Chr_LG12-CM007372.1_La_Tanjil_v1.0-1579734366:18866269..18866449rna-TanjilR_26404_La_Tanjil_v1.0-CDS-Chr_LG12-CM007372.1_La_Tanjil_v1.0-1579734366:18866269..18866449Lupinus angustifoliusCDS
rna-TanjilR_26404_La_Tanjil_v1.0-CDS-Chr_LG12-CM007372.1_La_Tanjil_v1.0-1579734366:18866096..18866130rna-TanjilR_26404_La_Tanjil_v1.0-CDS-Chr_LG12-CM007372.1_La_Tanjil_v1.0-1579734366:18866096..18866130Lupinus angustifoliusCDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
rna-TanjilR_26404_La_Tanjil_v1.0-exon-Chr_LG12-CM007372.1_La_Tanjil_v1.0-1579734366:18866269..18866449rna-TanjilR_26404_La_Tanjil_v1.0-exon-Chr_LG12-CM007372.1_La_Tanjil_v1.0-1579734366:18866269..18866449Lupinus angustifoliusexon
rna-TanjilR_26404_La_Tanjil_v1.0-exon-Chr_LG12-CM007372.1_La_Tanjil_v1.0-1579734366:18866096..18866130rna-TanjilR_26404_La_Tanjil_v1.0-exon-Chr_LG12-CM007372.1_La_Tanjil_v1.0-1579734366:18866096..18866130Lupinus angustifoliusexon


Homology
The following BLAST results are available for this feature:
BLAST of rna-TanjilR_26404 vs.
Analysis Date: 2020-01-28 (BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan: L. angustifolius cv. Tanjil genome v1.0
Date Performed: 2020-01-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..47

Sequences
The following sequences are available for this feature:

mRNA sequence

>rna-TanjilR_26404_La_Tanjil_v1.0 ID=rna-TanjilR_26404_La_Tanjil_v1.0; Name=rna-TanjilR_26404; organism=Lupinus angustifolius; type=mRNA; length=354bp
ATGGGAAGCGAAGCACCAAGTTGGGCTGAACAATGGGGTGCTGGTGGTAT
TGGTTCCATGGAAGATAATGACAATAGATCCCAAAAAGACATCACCGAGA
ACAAGAATTCAGGTTCTAAAAGTGGTCTCACCAAAGCCAAAGCAACTGTT
ACAAATTGTGTCAAATGGATTAAAAGCCTTTGTAAGAGAAAGAGTGCATC
AACTTAAACAAAACAAGATCTAAGTCTGTGTGCACTTCTAATTCACCACT
ATGGTTATGGTAGATACAACTTTTGTAATTTTCTTCCAGTTTTAACTAAT
TCAACGTGTTTTTATTCAGTTAAGCGGTTGCTTCTTGATGAAGACACTGT
TTAG
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protein sequence of rna-TanjilR_26404_La_Tanjil_v1.0

>rna-TanjilR_26404_La_Tanjil_v1.0 ID=rna-TanjilR_26404_La_Tanjil_v1.0; Name=rna-TanjilR_26404_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=71bp
MGSEAPSWAEQWGAGGIGSMEDNDNRSQKDITENKNSGSKSGLTKAKATV
TNCVKWIKSLFKRLLLDEDTV
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mRNA from alignment at Chr_LG12-CM007372.1:18866096..18866449-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna-TanjilR_26404_La_Tanjil_v1.0 ID=rna-TanjilR_26404_La_Tanjil_v1.0; Name=rna-TanjilR_26404; organism=Lupinus angustifolius; type=mRNA; length=354bp; location=Sequence derived from: Chr_LG12-CM007372.1:18866096..18866449- (Lupinus angustifolius
ATGGGAAGCGAAGCACCAAGTTGGGCTGAACAATGGGGTGCTGGTGGTAT
TGGTTCCATGGAAGATAATGACAATAGATCCCAAAAAGACATCACCGAGA
ACAAGAATTCAGGTTCTAAAAGTGGTCTCACCAAAGCCAAAGCAACTGTT
ACAAATTGTGTCAAATGGATTAAAAGCCTTTGTAAGAGAAAGAGTGCATC
AACTTAAACAAAACAAGATCTAAGTCTGTGTGCACTTCTAATTCACCACT
ATGGTTATGGTAGATACAACTTTTGTAATTTTCTTCCAGTTTTAACTAAT
TCAACGTGTTTTTATTCAGTTAAGCGGTTGCTTCTTGATGAAGACACTGT
TTAG
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Coding sequence (CDS) from alignment at Chr_LG12-CM007372.1:18866096..18866449-

>rna-TanjilR_26404_La_Tanjil_v1.0 ID=rna-TanjilR_26404_La_Tanjil_v1.0; Name=rna-TanjilR_26404; organism=Lupinus angustifolius; type=CDS; length=216bp; location=Sequence derived from: Chr_LG12-CM007372.1:18866096..18866449- (Lupinus angustifolius
ATGGGAAGCGAAGCACCAAGTTGGGCTGAACAATGGGGTGCTGGTGGTAT
TGGTTCCATGGAAGATAATGACAATAGATCCCAAAAAGACATCACCGAGA
ACAAGAATTCAGGTTCTAAAAGTGGTCTCACCAAAGCCAAAGCAACTGTT
ACAAATTGTGTCAAATGGATTAAAAGCCTTTTTAAGCGGTTGCTTCTTGA
TGAAGACACTGTTTAG
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