rna-TanjilR_19679

Transcript Overview
Namerna-TanjilR_19679
Unique Namerna-TanjilR_19679_La_Tanjil_v1.0
TypemRNA
OrganismLupinus angustifolius (blue lupin)
Sequence length318
Producthypothetical protein
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr_LG13-CM007373.1supercontigChr_LG13-CM007373.1:4065348..4065665 +Lupinus angustifolius L. Tanjil genome v1.0n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Lupinus angustifolius L. Tanjil genome v1.02019-09-17
InterProScan: L. angustifolius cv. Tanjil genome v1.02020-01-28
BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot2020-01-28
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
ananL075Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ananR241Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ananR255Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anpvR0326Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
anpvR0335Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
anasR0293Vigna angularis Jingnong 6 genome v1.1Vigna angularis
anasR0304Vigna angularis Jingnong 6 genome v1.1Vigna angularis
anasR0344Vigna angularis Jingnong 6 genome v1.1Vigna angularis
anavjR0290Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
anavjR0327Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
anccaR0236Cajanus cajan cv. Asha genome v2.0Cajanus cajan
anccaR0254Cajanus cajan cv. Asha genome v2.0Cajanus cajan
anvumR0331Vigna umbellata FF25 genome v1.0Vigna umbellata
anvumR0336Vigna umbellata FF25 genome v1.0Vigna umbellata
anvasR0326Vigna angularis cv. Shumari genome v1.a1Vigna angularis
anvasR0331Vigna angularis cv. Shumari genome v1.a1Vigna angularis

Orthologs
Gene/TranscriptAssemblySpecies
Cc_v2.0_24055.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan
Vum_07G00828.1Vigna umbellata FF25 genome v1.0Vigna umbellata
LR48_mrnaVigan05g136700Vigna angularis Jingnong 6 genome v1.1Vigna angularis
Vigan.07G103000.01Vigna angularis cv. Shumari genome v1.a1Vigna angularis
Va05G042630.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
rna-TanjilR_03005Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
rna-TanjilR_11677Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
gene-TanjilG_19679gene-TanjilG_19679_La_Tanjil_v1.0Lupinus angustifoliusgene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna-TanjilR_19679rna-TanjilR_19679_La_Tanjil_v1.0-proteinLupinus angustifoliuspolypeptide
rna-TanjilR_19679_La_Tanjil_v1.0rna-TanjilR_19679_La_Tanjil_v1.0Lupinus angustifoliuspolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
rna-TanjilR_19679_La_Tanjil_v1.0-exon-Chr_LG13-CM007373.1_La_Tanjil_v1.0-1579734366:4065348..4065665rna-TanjilR_19679_La_Tanjil_v1.0-exon-Chr_LG13-CM007373.1_La_Tanjil_v1.0-1579734366:4065348..4065665Lupinus angustifoliusexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
rna-TanjilR_19679_La_Tanjil_v1.0-CDS-Chr_LG13-CM007373.1_La_Tanjil_v1.0-1579734366:4065348..4065665rna-TanjilR_19679_La_Tanjil_v1.0-CDS-Chr_LG13-CM007373.1_La_Tanjil_v1.0-1579734366:4065348..4065665Lupinus angustifoliusCDS


Homology
The following BLAST results are available for this feature:
BLAST of rna-TanjilR_19679 vs.
Analysis Date: 2020-01-28 (BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
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Sequences
The following sequences are available for this feature:

mRNA sequence

>rna-TanjilR_19679_La_Tanjil_v1.0 ID=rna-TanjilR_19679_La_Tanjil_v1.0; Name=rna-TanjilR_19679; organism=Lupinus angustifolius; type=mRNA; length=318bp
ATGAAGACTGAGCAGAACAACAAAGAGAACGTTCCTCCATTCTGTAACAC
AATGAAGGCAAAGTTCAAGAAGAGCCCAATTTCGCAGAAAGCGAAGATTC
CATCTTTTAAGAGTATTGGAAATGGGATTCAACGAAAGCCTAAGAGAATC
CCTCTTTCTGATATCACTGATCTGTTCAATAACTCTTCAACCTTCACTAT
TTCCCACCACCACCGCCAAATCAATGATTTAGTTTCTGAAATTCCTTCTG
TGTCAATTTCTCGGTGGAGGGCACAAGTGGCTTCACCTTCCAAATCATTG
AGGATGGGATTTAGATGA
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protein sequence of rna-TanjilR_19679_La_Tanjil_v1.0

>rna-TanjilR_19679_La_Tanjil_v1.0 ID=rna-TanjilR_19679_La_Tanjil_v1.0; Name=rna-TanjilR_19679_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=105bp
MKTEQNNKENVPPFCNTMKAKFKKSPISQKAKIPSFKSIGNGIQRKPKRI
PLSDITDLFNNSSTFTISHHHRQINDLVSEIPSVSISRWRAQVASPSKSL
RMGFR
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mRNA from alignment at Chr_LG13-CM007373.1:4065348..4065665+

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna-TanjilR_19679_La_Tanjil_v1.0 ID=rna-TanjilR_19679_La_Tanjil_v1.0; Name=rna-TanjilR_19679; organism=Lupinus angustifolius; type=mRNA; length=318bp; location=Sequence derived from: Chr_LG13-CM007373.1:4065348..4065665+ (Lupinus angustifolius
ATGAAGACTGAGCAGAACAACAAAGAGAACGTTCCTCCATTCTGTAACAC
AATGAAGGCAAAGTTCAAGAAGAGCCCAATTTCGCAGAAAGCGAAGATTC
CATCTTTTAAGAGTATTGGAAATGGGATTCAACGAAAGCCTAAGAGAATC
CCTCTTTCTGATATCACTGATCTGTTCAATAACTCTTCAACCTTCACTAT
TTCCCACCACCACCGCCAAATCAATGATTTAGTTTCTGAAATTCCTTCTG
TGTCAATTTCTCGGTGGAGGGCACAAGTGGCTTCACCTTCCAAATCATTG
AGGATGGGATTTAGATGA
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Coding sequence (CDS) from alignment at Chr_LG13-CM007373.1:4065348..4065665+

>rna-TanjilR_19679_La_Tanjil_v1.0 ID=rna-TanjilR_19679_La_Tanjil_v1.0; Name=rna-TanjilR_19679; organism=Lupinus angustifolius; type=CDS; length=318bp; location=Sequence derived from: Chr_LG13-CM007373.1:4065348..4065665+ (Lupinus angustifolius
ATGAAGACTGAGCAGAACAACAAAGAGAACGTTCCTCCATTCTGTAACAC
AATGAAGGCAAAGTTCAAGAAGAGCCCAATTTCGCAGAAAGCGAAGATTC
CATCTTTTAAGAGTATTGGAAATGGGATTCAACGAAAGCCTAAGAGAATC
CCTCTTTCTGATATCACTGATCTGTTCAATAACTCTTCAACCTTCACTAT
TTCCCACCACCACCGCCAAATCAATGATTTAGTTTCTGAAATTCCTTCTG
TGTCAATTTCTCGGTGGAGGGCACAAGTGGCTTCACCTTCCAAATCATTG
AGGATGGGATTTAGATGA
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