rna-TanjilR_00460
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Homology
BLAST of rna-TanjilR_00460 vs. DB:Swiss
Match: ARR17_ARATH (Two-component response regulator ARR17 OS=Arabidopsis thaliana OX=3702 GN=ARR17 PE=2 SV=1) HSP 1 Score: 51.2174 bits (121), Expect = 1.861e-20 Identity = 22/24 (91.67%), Postives = 24/24 (100.00%), Query Frame = 1 Query: 1102 KVNLIITDYCMPGMTGYELLKKIK 1173 KVNLIITDYCMPGMTG+ELLKK+K Sbjct: 75 KVNLIITDYCMPGMTGFELLKKVK 98 HSP 2 Score: 45.8246 bits (107), Expect = 1.861e-20 Identity = 20/26 (76.92%), Postives = 25/26 (96.15%), Query Frame = 3 Query: 1245 IQESSEMKEIPVVIMSSENIPTRINK 1322 ++ESS +KE+PVVI+SSENIPTRINK Sbjct: 97 VKESSNLKEVPVVILSSENIPTRINK 122 HSP 3 Score: 44.669 bits (104), Expect = 1.861e-20 Identity = 19/29 (65.52%), Postives = 23/29 (79.31%), Query Frame = 1 Query: 1411 RCMEEGAQMFMLKPLKQSDVKKLTCQLMN 1497 +C+ GAQMFM KPLK SDV+KL C L+N Sbjct: 122 KCLASGAQMFMQKPLKLSDVEKLKCHLLN 150
BLAST of rna-TanjilR_00460 vs. DB:Swiss
Match: ARR16_ARATH (Two-component response regulator ARR16 OS=Arabidopsis thaliana OX=3702 GN=ARR16 PE=1 SV=1) HSP 1 Score: 49.2914 bits (116), Expect = 2.471e-20 Identity = 21/24 (87.50%), Postives = 24/24 (100.00%), Query Frame = 1 Query: 1102 KVNLIITDYCMPGMTGYELLKKIK 1173 KV+LIITDYCMPGMTG+ELLKK+K Sbjct: 86 KVSLIITDYCMPGMTGFELLKKVK 109 HSP 2 Score: 46.595 bits (109), Expect = 2.471e-20 Identity = 20/26 (76.92%), Postives = 25/26 (96.15%), Query Frame = 3 Query: 1245 IQESSEMKEIPVVIMSSENIPTRINK 1322 ++ESS ++E+PVVIMSSENIPTRINK Sbjct: 108 VKESSNLREVPVVIMSSENIPTRINK 133 HSP 3 Score: 45.4394 bits (106), Expect = 2.471e-20 Identity = 19/29 (65.52%), Postives = 23/29 (79.31%), Query Frame = 1 Query: 1411 RCMEEGAQMFMLKPLKQSDVKKLTCQLMN 1497 +C+ GAQMFM KPLK +DV+KL C LMN Sbjct: 133 KCLASGAQMFMQKPLKLADVEKLKCHLMN 161
BLAST of rna-TanjilR_00460 vs. DB:Swiss
Match: ARR4_ARATH (Two-component response regulator ARR4 OS=Arabidopsis thaliana OX=3702 GN=ARR4 PE=1 SV=1) HSP 1 Score: 54.299 bits (129), Expect = 2.594e-18 Identity = 25/30 (83.33%), Postives = 27/30 (90.00%), Query Frame = 1 Query: 1084 STF*RSKVNLIITDYCMPGMTGYELLKKIK 1173 + F R KV+LIITDYCMPGMTGYELLKKIK Sbjct: 82 AEFDRLKVDLIITDYCMPGMTGYELLKKIK 111 HSP 2 Score: 41.2022 bits (95), Expect = 2.594e-18 Identity = 17/27 (62.96%), Postives = 22/27 (81.48%), Query Frame = 1 Query: 1411 RCMEEGAQMFMLKPLKQSDVKKLTCQL 1491 RC+EEGAQ F+LKP+K +DVK+L L Sbjct: 135 RCLEEGAQDFLLKPVKLADVKRLRSHL 161 HSP 3 Score: 38.891 bits (89), Expect = 2.594e-18 Identity = 17/26 (65.38%), Postives = 23/26 (88.46%), Query Frame = 3 Query: 1245 IQESSEMKEIPVVIMSSENIPTRINK 1322 I+ESS +E+PVVIMSSEN+ TRI++ Sbjct: 110 IKESSNFREVPVVIMSSENVLTRIDR 135
BLAST of rna-TanjilR_00460 vs. DB:Swiss
Match: ARR3_ARATH (Two-component response regulator ARR3 OS=Arabidopsis thaliana OX=3702 GN=ARR3 PE=2 SV=1) HSP 1 Score: 54.6842 bits (130), Expect = 7.004e-18 Identity = 25/28 (89.29%), Postives = 26/28 (92.86%), Query Frame = 1 Query: 1090 F*RSKVNLIITDYCMPGMTGYELLKKIK 1173 F R KV+LIITDYCMPGMTGYELLKKIK Sbjct: 83 FDRLKVDLIITDYCMPGMTGYELLKKIK 110 HSP 2 Score: 39.2762 bits (90), Expect = 7.004e-18 Identity = 17/26 (65.38%), Postives = 23/26 (88.46%), Query Frame = 3 Query: 1245 IQESSEMKEIPVVIMSSENIPTRINK 1322 I+ES+ KE+PVVIMSSEN+ TRI++ Sbjct: 109 IKESTSFKEVPVVIMSSENVMTRIDR 134 HSP 3 Score: 39.2762 bits (90), Expect = 7.004e-18 Identity = 18/34 (52.94%), Postives = 26/34 (76.47%), Query Frame = 1 Query: 1411 RCMEEGAQMFMLKPLKQSDVKKLTCQLMNRDCEI 1512 RC+EEGA+ F+LKP+K +DVK+L L RD ++ Sbjct: 134 RCLEEGAEDFLLKPVKLADVKRLRSYL-TRDVKV 166
BLAST of rna-TanjilR_00460 vs. DB:Swiss
Match: ORR4_ORYSJ (Two-component response regulator ORR4 OS=Oryza sativa subsp. japonica OX=39947 GN=RR4 PE=2 SV=1) HSP 1 Score: 49.6766 bits (117), Expect = 3.440e-17 Identity = 20/23 (86.96%), Postives = 23/23 (100.00%), Query Frame = 1 Query: 1105 VNLIITDYCMPGMTGYELLKKIK 1173 VNLIITDYCMPGMTGY+LLK++K Sbjct: 74 VNLIITDYCMPGMTGYDLLKRVK 96 HSP 2 Score: 40.817 bits (94), Expect = 3.440e-17 Identity = 17/26 (65.38%), Postives = 23/26 (88.46%), Query Frame = 3 Query: 1245 IQESSEMKEIPVVIMSSENIPTRINK 1322 ++ SS +K+IPVVIMSSEN+P RIN+ Sbjct: 95 VKGSSSLKDIPVVIMSSENVPARINR 120 HSP 3 Score: 40.0466 bits (92), Expect = 3.440e-17 Identity = 16/30 (53.33%), Postives = 23/30 (76.67%), Query Frame = 1 Query: 1411 RCMEEGAQMFMLKPLKQSDVKKLTCQLMNR 1500 RC+E+GA+ F LKP+K +D+KKL L+ R Sbjct: 120 RCLEDGAEEFFLKPVKLADMKKLKSHLLKR 149
BLAST of rna-TanjilR_00460 vs. DB:Swiss
Match: ORR4_ORYSI (Two-component response regulator ORR4 OS=Oryza sativa subsp. indica OX=39946 GN=RR4 PE=2 SV=1) HSP 1 Score: 49.6766 bits (117), Expect = 3.440e-17 Identity = 20/23 (86.96%), Postives = 23/23 (100.00%), Query Frame = 1 Query: 1105 VNLIITDYCMPGMTGYELLKKIK 1173 VNLIITDYCMPGMTGY+LLK++K Sbjct: 74 VNLIITDYCMPGMTGYDLLKRVK 96 HSP 2 Score: 40.817 bits (94), Expect = 3.440e-17 Identity = 17/26 (65.38%), Postives = 23/26 (88.46%), Query Frame = 3 Query: 1245 IQESSEMKEIPVVIMSSENIPTRINK 1322 ++ SS +K+IPVVIMSSEN+P RIN+ Sbjct: 95 VKGSSSLKDIPVVIMSSENVPARINR 120 HSP 3 Score: 40.0466 bits (92), Expect = 3.440e-17 Identity = 16/30 (53.33%), Postives = 23/30 (76.67%), Query Frame = 1 Query: 1411 RCMEEGAQMFMLKPLKQSDVKKLTCQLMNR 1500 RC+E+GA+ F LKP+K +D+KKL L+ R Sbjct: 120 RCLEDGAEEFFLKPVKLADMKKLKSHLLKR 149
BLAST of rna-TanjilR_00460 vs. DB:Swiss
Match: ORR10_ORYSJ (Two-component response regulator ORR10 OS=Oryza sativa subsp. japonica OX=39947 GN=RR10 PE=2 SV=2) HSP 1 Score: 50.8322 bits (120), Expect = 3.956e-17 Identity = 22/23 (95.65%), Postives = 23/23 (100.00%), Query Frame = 1 Query: 1105 VNLIITDYCMPGMTGYELLKKIK 1173 VNLIITDYCMPGMTGY+LLKKIK Sbjct: 69 VNLIITDYCMPGMTGYDLLKKIK 91 HSP 2 Score: 41.9726 bits (97), Expect = 3.956e-17 Identity = 18/26 (69.23%), Postives = 25/26 (96.15%), Query Frame = 3 Query: 1245 IQESSEMKEIPVVIMSSENIPTRINK 1322 I+ESS +++IPVVIMSS+NIP+RIN+ Sbjct: 90 IKESSYLRDIPVVIMSSDNIPSRINR 115 HSP 3 Score: 37.7354 bits (86), Expect = 3.956e-17 Identity = 15/32 (46.88%), Postives = 21/32 (65.62%), Query Frame = 1 Query: 1411 RCMEEGAQMFMLKPLKQSDVKKLTCQLMNRDC 1506 RC+EEGA F LKP++ SD+ KL ++ C Sbjct: 115 RCLEEGADEFFLKPVRLSDMSKLKPHILKSRC 146
BLAST of rna-TanjilR_00460 vs. DB:Swiss
Match: ORR10_ORYSI (Two-component response regulator ORR10 OS=Oryza sativa subsp. indica OX=39946 GN=RR10 PE=2 SV=1) HSP 1 Score: 50.8322 bits (120), Expect = 3.956e-17 Identity = 22/23 (95.65%), Postives = 23/23 (100.00%), Query Frame = 1 Query: 1105 VNLIITDYCMPGMTGYELLKKIK 1173 VNLIITDYCMPGMTGY+LLKKIK Sbjct: 69 VNLIITDYCMPGMTGYDLLKKIK 91 HSP 2 Score: 41.9726 bits (97), Expect = 3.956e-17 Identity = 18/26 (69.23%), Postives = 25/26 (96.15%), Query Frame = 3 Query: 1245 IQESSEMKEIPVVIMSSENIPTRINK 1322 I+ESS +++IPVVIMSS+NIP+RIN+ Sbjct: 90 IKESSYLRDIPVVIMSSDNIPSRINR 115 HSP 3 Score: 37.7354 bits (86), Expect = 3.956e-17 Identity = 15/32 (46.88%), Postives = 21/32 (65.62%), Query Frame = 1 Query: 1411 RCMEEGAQMFMLKPLKQSDVKKLTCQLMNRDC 1506 RC+EEGA F LKP++ SD+ KL ++ C Sbjct: 115 RCLEEGADEFFLKPVRLSDMSKLKPHILKSRC 146
BLAST of rna-TanjilR_00460 vs. DB:Swiss
Match: ORR9_ORYSJ (Two-component response regulator ORR9 OS=Oryza sativa subsp. japonica OX=39947 GN=RR9 PE=2 SV=2) HSP 1 Score: 50.8322 bits (120), Expect = 4.186e-17 Identity = 22/23 (95.65%), Postives = 23/23 (100.00%), Query Frame = 1 Query: 1105 VNLIITDYCMPGMTGYELLKKIK 1173 VNLIITDYCMPGMTGY+LLKKIK Sbjct: 69 VNLIITDYCMPGMTGYDLLKKIK 91 HSP 2 Score: 41.9726 bits (97), Expect = 4.186e-17 Identity = 18/26 (69.23%), Postives = 25/26 (96.15%), Query Frame = 3 Query: 1245 IQESSEMKEIPVVIMSSENIPTRINK 1322 I+ESS +++IPVVIMSS+NIP+RIN+ Sbjct: 90 IKESSYLRDIPVVIMSSDNIPSRINR 115 HSP 3 Score: 37.3502 bits (85), Expect = 4.186e-17 Identity = 15/32 (46.88%), Postives = 21/32 (65.62%), Query Frame = 1 Query: 1411 RCMEEGAQMFMLKPLKQSDVKKLTCQLMNRDC 1506 RC+EEGA F LKP++ SD+ KL ++ C Sbjct: 115 RCLEEGADEFFLKPVRLSDMSKLKPHILKSRC 146
BLAST of rna-TanjilR_00460 vs. DB:Swiss
Match: ORR9_ORYSI (Two-component response regulator ORR9 OS=Oryza sativa subsp. indica OX=39946 GN=RR9 PE=2 SV=1) HSP 1 Score: 50.8322 bits (120), Expect = 4.186e-17 Identity = 22/23 (95.65%), Postives = 23/23 (100.00%), Query Frame = 1 Query: 1105 VNLIITDYCMPGMTGYELLKKIK 1173 VNLIITDYCMPGMTGY+LLKKIK Sbjct: 69 VNLIITDYCMPGMTGYDLLKKIK 91 HSP 2 Score: 41.9726 bits (97), Expect = 4.186e-17 Identity = 18/26 (69.23%), Postives = 25/26 (96.15%), Query Frame = 3 Query: 1245 IQESSEMKEIPVVIMSSENIPTRINK 1322 I+ESS +++IPVVIMSS+NIP+RIN+ Sbjct: 90 IKESSYLRDIPVVIMSSDNIPSRINR 115 HSP 3 Score: 37.3502 bits (85), Expect = 4.186e-17 Identity = 15/32 (46.88%), Postives = 21/32 (65.62%), Query Frame = 1 Query: 1411 RCMEEGAQMFMLKPLKQSDVKKLTCQLMNRDC 1506 RC+EEGA F LKP++ SD+ KL ++ C Sbjct: 115 RCLEEGADEFFLKPVRLSDMSKLKPHILKSRC 146 The following BLAST results are available for this feature:
BLAST of rna-TanjilR_00460 vs. DB:Swiss
Analysis Date: 2020-01-28 (BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot) Total hits: 10
InterPro
Analysis Name: InterProScan: L. angustifolius cv. Tanjil genome v1.0
Date Performed: 2020-01-28
Sequences
The
following sequences are available for this feature:
mRNA sequence >rna-TanjilR_00460_La_Tanjil_v1.0 ID=rna-TanjilR_00460_La_Tanjil_v1.0; Name=rna-TanjilR_00460; organism=Lupinus angustifolius; type=mRNA; length=1515bpback to top protein sequence of rna-TanjilR_00460_La_Tanjil_v1.0 >rna-TanjilR_00460_La_Tanjil_v1.0 ID=rna-TanjilR_00460_La_Tanjil_v1.0; Name=rna-TanjilR_00460_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=154bpback to top mRNA from alignment at Chr_LG15-CM007375.1:12863224..12864738+ Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>rna-TanjilR_00460_La_Tanjil_v1.0 ID=rna-TanjilR_00460_La_Tanjil_v1.0; Name=rna-TanjilR_00460; organism=Lupinus angustifolius; type=mRNA; length=1515bp; location=Sequence derived from: Chr_LG15-CM007375.1:12863224..12864738+ (Lupinus angustifoliusback to top Coding sequence (CDS) from alignment at Chr_LG15-CM007375.1:12863224..12864738+ >rna-TanjilR_00460_La_Tanjil_v1.0 ID=rna-TanjilR_00460_La_Tanjil_v1.0; Name=rna-TanjilR_00460; organism=Lupinus angustifolius; type=CDS; length=465bp; location=Sequence derived from: Chr_LG15-CM007375.1:12863224..12864738+ (Lupinus angustifoliusback to top |