rna-TanjilR_08673
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Homology
BLAST of rna-TanjilR_08673 vs. DB:Swiss
Match: DJB14_HUMAN (DnaJ homolog subfamily B member 14 OS=Homo sapiens OX=9606 GN=DNAJB14 PE=1 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 1.099e-12 Identity = 39/96 (40.62%), Postives = 58/96 (60.42%), Query Frame = 1 Query: 196 DWYGILGVSPFADDETVRKQYRKLALTLHPDKNKTLGAEGAFKLVSEAWSLLSDKTKRLAYNQKRTGNNPNHIGTQSAAHSSNGIYNFKKNVTSNV 483 ++Y +LGV+ A DE ++K YRKLAL HPDKN GA AFK + A+++LS+ KR Y+ TGN Q+ H +NG +NF + +++ Sbjct: 108 NYYEVLGVTKDAGDEDLKKAYRKLALKFHPDKNHAPGATDAFKKIGNAYAVLSNPEKRKQYD--LTGNE-----EQACNHQNNGRFNFHRGCEADI 196
BLAST of rna-TanjilR_08673 vs. DB:Swiss
Match: DNAJ_LACP3 (Chaperone protein DnaJ OS=Lactobacillus paracasei (strain ATCC 334 / BCRC 17002 / CIP 107868 / KCTC 3260 / NRRL B-441) OX=321967 GN=dnaJ PE=3 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 1.202e-12 Identity = 35/75 (46.67%), Postives = 50/75 (66.67%), Query Frame = 1 Query: 181 ISGEMDWYGILGVSPFADDETVRKQYRKLALTLHPDKNKTLGAEGAFKLVSEAWSLLSDKTKRLAYNQKRTGNNP 405 ++ + D+Y LGVS ADD+T+RK +RKL+ HPD N GAE FK ++EA+ +LSD KR AY+Q + + P Sbjct: 1 MADQKDYYETLGVSRDADDDTIRKAFRKLSKKYHPDLNHAPGAEQKFKDINEAYQVLSDPQKRAAYDQYGSADGP 75
BLAST of rna-TanjilR_08673 vs. DB:Swiss
Match: DNAJ_LACCB (Chaperone protein DnaJ OS=Lactobacillus casei (strain BL23) OX=543734 GN=dnaJ PE=3 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 1.202e-12 Identity = 35/75 (46.67%), Postives = 50/75 (66.67%), Query Frame = 1 Query: 181 ISGEMDWYGILGVSPFADDETVRKQYRKLALTLHPDKNKTLGAEGAFKLVSEAWSLLSDKTKRLAYNQKRTGNNP 405 ++ + D+Y LGVS ADD+T+RK +RKL+ HPD N GAE FK ++EA+ +LSD KR AY+Q + + P Sbjct: 1 MADQKDYYETLGVSRDADDDTIRKAFRKLSKKYHPDLNHAPGAEQKFKDINEAYQVLSDPQKRAAYDQYGSADGP 75
BLAST of rna-TanjilR_08673 vs. DB:Swiss
Match: DJB14_PONAB (DnaJ homolog subfamily B member 14 OS=Pongo abelii OX=9601 GN=DNAJB14 PE=2 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 3.116e-12 Identity = 39/96 (40.62%), Postives = 57/96 (59.38%), Query Frame = 1 Query: 196 DWYGILGVSPFADDETVRKQYRKLALTLHPDKNKTLGAEGAFKLVSEAWSLLSDKTKRLAYNQKRTGNNPNHIGTQSAAHSSNGIYNFKKNVTSNV 483 + Y +LGV+ A DE ++K YRKLAL HPDKN GA AFK + A+++LS+ KR Y+ TGN Q+ H +NG +NF + +++ Sbjct: 108 NCYEVLGVTKDAGDEDLKKAYRKLALKFHPDKNHAPGATDAFKKIGNAYAVLSNPEKRKQYD--LTGNE-----EQACNHQNNGRFNFHRGCEADI 196
BLAST of rna-TanjilR_08673 vs. DB:Swiss
Match: DJB14_MOUSE (DnaJ homolog subfamily B member 14 OS=Mus musculus OX=10090 GN=Dnajb14 PE=2 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 4.228e-12 Identity = 38/96 (39.58%), Postives = 58/96 (60.42%), Query Frame = 1 Query: 196 DWYGILGVSPFADDETVRKQYRKLALTLHPDKNKTLGAEGAFKLVSEAWSLLSDKTKRLAYNQKRTGNNPNHIGTQSAAHSSNGIYNFKKNVTSNV 483 ++Y +LGV+ A DE ++K YRKLAL HPDKN GA AFK + A+++LS+ KR Y+ TG+ Q+ H +NG +NF + +++ Sbjct: 108 NYYEVLGVTKDAGDEDLKKAYRKLALKFHPDKNHAPGATDAFKKIGNAYAVLSNPEKRKQYD--LTGSE-----EQACNHQNNGRFNFHRGCEADI 196
BLAST of rna-TanjilR_08673 vs. DB:Swiss
Match: DJB12_MOUSE (DnaJ homolog subfamily B member 12 OS=Mus musculus OX=10090 GN=Dnajb12 PE=1 SV=2) HSP 1 Score: 72.0182 bits (175), Expect = 5.005e-12 Identity = 35/74 (47.30%), Postives = 48/74 (64.86%), Query Frame = 1 Query: 163 ISAENKISGEMDWYGILGVSPFADDETVRKQYRKLALTLHPDKNKTLGAEGAFKLVSEAWSLLSDKTKRLAYNQ 384 ++A ++ D+Y ILGVS A DE ++K YRKLAL HPDKN GA AFK + A+++LS+ KR Y+Q Sbjct: 100 VAAVKRVKQCKDYYEILGVSRSASDEDLKKAYRKLALKFHPDKNHAPGATEAFKAIGTAYAVLSNPEKRKQYDQ 173
BLAST of rna-TanjilR_08673 vs. DB:Swiss
Match: DJB12_BOVIN (DnaJ homolog subfamily B member 12 OS=Bos taurus OX=9913 GN=DNAJB12 PE=2 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 5.354e-12 Identity = 35/74 (47.30%), Postives = 48/74 (64.86%), Query Frame = 1 Query: 163 ISAENKISGEMDWYGILGVSPFADDETVRKQYRKLALTLHPDKNKTLGAEGAFKLVSEAWSLLSDKTKRLAYNQ 384 ++A ++ D+Y ILGVS A DE ++K YRKLAL HPDKN GA AFK + A+++LS+ KR Y+Q Sbjct: 99 VAAVKRVKQCKDYYEILGVSRGASDEDLKKAYRKLALKFHPDKNHAPGATEAFKAIGTAYAVLSNPEKRKQYDQ 172
BLAST of rna-TanjilR_08673 vs. DB:Swiss
Match: DNAJ_DEIRA (Chaperone protein DnaJ OS=Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422) OX=243230 GN=dnaJ PE=3 SV=2) HSP 1 Score: 71.2478 bits (173), Expect = 7.770e-12 Identity = 37/72 (51.39%), Postives = 47/72 (65.28%), Query Frame = 1 Query: 193 MDWYGILGVSPFADDETVRKQYRKLALTLHPDKNKTLGAEGAFKLVSEAWSLLSDKTKRLAYNQKRTGNNPN 408 MD+Y +LGVS A + ++ YRKLAL LHPD+NK GA F VSEA+S+LSD KR Y+ R G+ P Sbjct: 1 MDYYELLGVSRTASADEIKSAYRKLALKLHPDRNKEEGAAEKFAQVSEAYSVLSDTEKRAHYD--RFGSAPG 70
BLAST of rna-TanjilR_08673 vs. DB:Swiss
Match: DJB14_BOVIN (DnaJ homolog subfamily B member 14 OS=Bos taurus OX=9913 GN=DNAJB14 PE=2 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 7.850e-12 Identity = 38/96 (39.58%), Postives = 57/96 (59.38%), Query Frame = 1 Query: 196 DWYGILGVSPFADDETVRKQYRKLALTLHPDKNKTLGAEGAFKLVSEAWSLLSDKTKRLAYNQKRTGNNPNHIGTQSAAHSSNGIYNFKKNVTSNV 483 ++Y +LGV+ A DE ++K YRKLAL HPDKN GA AFK + A+++LS+ KR Y+ TGN Q+ +NG +NF + +++ Sbjct: 108 NYYEVLGVTKDAGDEDLKKAYRKLALKFHPDKNHAPGATDAFKKIGNAYAVLSNPEKRKQYD--LTGNE-----EQACNQQNNGRFNFHRGCEADI 196
BLAST of rna-TanjilR_08673 vs. DB:Swiss
Match: DNJB4_PONAB (DnaJ homolog subfamily B member 4 OS=Pongo abelii OX=9601 GN=DNAJB4 PE=2 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 7.885e-12 Identity = 34/63 (53.97%), Postives = 43/63 (68.25%), Query Frame = 1 Query: 196 DWYGILGVSPFADDETVRKQYRKLALTLHPDKNKTLGAEGAFKLVSEAWSLLSDKTKRLAYNQ 384 D+Y ILG+ A DE ++K YRK AL HPDKNK+ AE FK V+EA+ +LSD KR Y+Q Sbjct: 4 DYYCILGIEKGASDEDIKKAYRKQALKFHPDKNKSPQAEEKFKEVAEAYEVLSDPKKREIYDQ 66 The following BLAST results are available for this feature:
BLAST of rna-TanjilR_08673 vs. DB:Swiss
Analysis Date: 2020-01-28 (BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot) Total hits: 10
InterPro
Analysis Name: InterProScan: L. angustifolius cv. Tanjil genome v1.0
Date Performed: 2020-01-28
Sequences
The
following sequences are available for this feature:
mRNA sequence >rna-TanjilR_08673_La_Tanjil_v1.0 ID=rna-TanjilR_08673_La_Tanjil_v1.0; Name=rna-TanjilR_08673; organism=Lupinus angustifolius; type=mRNA; length=2055bpback to top protein sequence of rna-TanjilR_08673_La_Tanjil_v1.0 >rna-TanjilR_08673_La_Tanjil_v1.0 ID=rna-TanjilR_08673_La_Tanjil_v1.0; Name=rna-TanjilR_08673_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=684bpback to top mRNA from alignment at Chr_LG15-CM007375.1:15707676..15709730+ Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>rna-TanjilR_08673_La_Tanjil_v1.0 ID=rna-TanjilR_08673_La_Tanjil_v1.0; Name=rna-TanjilR_08673; organism=Lupinus angustifolius; type=mRNA; length=2055bp; location=Sequence derived from: Chr_LG15-CM007375.1:15707676..15709730+ (Lupinus angustifoliusback to top Coding sequence (CDS) from alignment at Chr_LG15-CM007375.1:15707676..15709730+ >rna-TanjilR_08673_La_Tanjil_v1.0 ID=rna-TanjilR_08673_La_Tanjil_v1.0; Name=rna-TanjilR_08673; organism=Lupinus angustifolius; type=CDS; length=2055bp; location=Sequence derived from: Chr_LG15-CM007375.1:15707676..15709730+ (Lupinus angustifoliusback to top |