rna-TanjilR_07662

Transcript Overview
Namerna-TanjilR_07662
Unique Namerna-TanjilR_07662_La_Tanjil_v1.0
TypemRNA
OrganismLupinus angustifolius (blue lupin)
Sequence length432
Producthypothetical protein
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr_LG17-CM007377.1supercontigChr_LG17-CM007377.1:21010641..21011072 +Lupinus angustifolius L. Tanjil genome v1.0n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Lupinus angustifolius L. Tanjil genome v1.02019-09-17
InterProScan: L. angustifolius cv. Tanjil genome v1.02020-01-28
BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot2020-01-28
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
ananR375Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ananR389Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancaiR0583Cicer arietinum ICC 4958 genome v2Cicer arietinum
ancaiR0590Cicer arietinum ICC 4958 genome v2Cicer arietinum
ancaR0504Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ancaR0517Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
anccR0639Cajanus cajan Asha genome v1.0Cajanus cajan
anpsR0416Pisum sativum Cameor genome v1aPisum sativum
anpvR0543Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
anpvR0559Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
anvuR0439Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
anvuR0457Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
anasR0520Vigna angularis Jingnong 6 genome v1.1Vigna angularis
anasR0565Vigna angularis Jingnong 6 genome v1.1Vigna angularis
anzwsR0479Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
antifR0483Vicia faba cv. Tiffany genome v1.0Vicia faba
anvfhR0477Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
anvuaR0444Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
anvssR0554Vicia sativa cv. Studenica genome v1.0Vicia sativa
ancanR0452Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
ancanR0467Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
anavjR0495Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
anavjR0532Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
ancarR0488Cicer arietinum
ancarR0504Cicer arietinum
anccaR0432Cajanus cajan cv. Asha genome v2.0Cajanus cajan
anccaR0462Cajanus cajan cv. Asha genome v2.0Cajanus cajan
anvumR0501Vigna umbellata FF25 genome v1.0Vigna umbellata
anvumR0532Vigna umbellata FF25 genome v1.0Vigna umbellata
anvvaR0490Vicia villosa cv. AU Merit genome v1.0Vicia villosa
anvasR0518Vigna angularis cv. Shumari genome v1.a1Vigna angularis
anvstR0514Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
anvasR0545Vigna angularis cv. Shumari genome v1.a1Vigna angularis
anvstR0540Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
anvunR0446Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
anpvfR0562Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
anpvfR0576Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris

Orthologs
Gene/TranscriptAssemblySpecies
Vigst.01G231000.01Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
Vigun03g270500.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
LR48_mrnaVigan06g038700Vigna angularis Jingnong 6 genome v1.1Vigna angularis
Phvul.002G024200.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
Vigst.10G116600.01Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
Cc_v2.0_14189.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan
Ca_16020Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
Va01G073550.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
Va06G009780.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
Vum_01G02535.1Vigna umbellata FF25 genome v1.0Vigna umbellata
Phvul.003G250000.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
Ca_02100Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
evm.model.Chr03.2649Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
rna-XM_004511934.3Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
Vigun03g270500.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
jg16974.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Cc_v2.0_26400.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan
Psat04G0274300-T1Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
Vum_10G01290.1Vigna umbellata FF25 genome v1.0Vigna umbellata
Vigan.10G171900.01Vigna angularis cv. Shumari genome v1.a1Vigna angularis
rna-KK1_013001Cajanus cajan Asha genome v1.0Cajanus cajan
Vigan.01G338900.01Vigna angularis cv. Shumari genome v1.a1Vigna angularis
XM_058879925.1Vicia villosa cv. AU Merit genome v1.0Vicia villosa
rna-XM_004509164.3Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
Psat4g090040.1Pisum sativum Cameor genome v1aPisum sativum
Vigun02g137800.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
rna-TanjilR_14268Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
rna-TanjilR_22785Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
gene-TanjilG_07662gene-TanjilG_07662_La_Tanjil_v1.0Lupinus angustifoliusgene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna-TanjilR_07662rna-TanjilR_07662_La_Tanjil_v1.0-proteinLupinus angustifoliuspolypeptide
rna-TanjilR_07662_La_Tanjil_v1.0rna-TanjilR_07662_La_Tanjil_v1.0Lupinus angustifoliuspolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
rna-TanjilR_07662_La_Tanjil_v1.0-exon-Chr_LG17-CM007377.1_La_Tanjil_v1.0-1579734366:21010641..21011072rna-TanjilR_07662_La_Tanjil_v1.0-exon-Chr_LG17-CM007377.1_La_Tanjil_v1.0-1579734366:21010641..21011072Lupinus angustifoliusexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
rna-TanjilR_07662_La_Tanjil_v1.0-CDS-Chr_LG17-CM007377.1_La_Tanjil_v1.0-1579734366:21010641..21011072rna-TanjilR_07662_La_Tanjil_v1.0-CDS-Chr_LG17-CM007377.1_La_Tanjil_v1.0-1579734366:21010641..21011072Lupinus angustifoliusCDS


Homology
The following BLAST results are available for this feature:
BLAST of rna-TanjilR_07662 vs.
Analysis Date: 2020-01-28 (BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan: L. angustifolius cv. Tanjil genome v1.0
Date Performed: 2020-01-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR025322Protein of unknown function DUF4228, plantPFAMPF14009DUF4228coord: 1..131
e-value: 2.5E-22
score: 80.1

Sequences
The following sequences are available for this feature:

mRNA sequence

>rna-TanjilR_07662_La_Tanjil_v1.0 ID=rna-TanjilR_07662_La_Tanjil_v1.0; Name=rna-TanjilR_07662; organism=Lupinus angustifolius; type=mRNA; length=432bp
ATGGGAAATTGCTTCTTCATTTCCTCCAATTCTAACCCTGTTCACACAGT
GAAGCTCATCATAGTACCCGAAGGGAAGTTACGCGAATTCTCATATCATG
TTAAAGTTTCATCTTTATTACAAAAATACCCCACCACCTTCATATGTAAC
TCCGATGACATGGACTTCAACGACGTCGTAAAAGCCATCGATAGAGACCA
AATGTTACAACTGGGTCATCTCTATTTCGCTATTCCCCTAAGTGAATTGG
AGAGGAAATTGAAAGCAGAAGAAATGGTTGTATTAGCAGTCAAGGCTAGC
ATGGTGATCAGGAAGAGTGGTAGAAAGAAATGTGGGTTTCGACGGAAAAG
GGTTGTCGAGTTTTCCTACGATGAGGGTGGAAAGCGTAGTCGAAGTGTGG
CCTCAGAAAACAGTATCAATGTTGAGTCTTAG
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protein sequence of rna-TanjilR_07662_La_Tanjil_v1.0

>rna-TanjilR_07662_La_Tanjil_v1.0 ID=rna-TanjilR_07662_La_Tanjil_v1.0; Name=rna-TanjilR_07662_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=143bp
MGNCFFISSNSNPVHTVKLIIVPEGKLREFSYHVKVSSLLQKYPTTFICN
SDDMDFNDVVKAIDRDQMLQLGHLYFAIPLSELERKLKAEEMVVLAVKAS
MVIRKSGRKKCGFRRKRVVEFSYDEGGKRSRSVASENSINVES
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mRNA from alignment at Chr_LG17-CM007377.1:21010641..21011072+

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna-TanjilR_07662_La_Tanjil_v1.0 ID=rna-TanjilR_07662_La_Tanjil_v1.0; Name=rna-TanjilR_07662; organism=Lupinus angustifolius; type=mRNA; length=432bp; location=Sequence derived from: Chr_LG17-CM007377.1:21010641..21011072+ (Lupinus angustifolius
ATGGGAAATTGCTTCTTCATTTCCTCCAATTCTAACCCTGTTCACACAGT
GAAGCTCATCATAGTACCCGAAGGGAAGTTACGCGAATTCTCATATCATG
TTAAAGTTTCATCTTTATTACAAAAATACCCCACCACCTTCATATGTAAC
TCCGATGACATGGACTTCAACGACGTCGTAAAAGCCATCGATAGAGACCA
AATGTTACAACTGGGTCATCTCTATTTCGCTATTCCCCTAAGTGAATTGG
AGAGGAAATTGAAAGCAGAAGAAATGGTTGTATTAGCAGTCAAGGCTAGC
ATGGTGATCAGGAAGAGTGGTAGAAAGAAATGTGGGTTTCGACGGAAAAG
GGTTGTCGAGTTTTCCTACGATGAGGGTGGAAAGCGTAGTCGAAGTGTGG
CCTCAGAAAACAGTATCAATGTTGAGTCTTAG
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Coding sequence (CDS) from alignment at Chr_LG17-CM007377.1:21010641..21011072+

>rna-TanjilR_07662_La_Tanjil_v1.0 ID=rna-TanjilR_07662_La_Tanjil_v1.0; Name=rna-TanjilR_07662; organism=Lupinus angustifolius; type=CDS; length=432bp; location=Sequence derived from: Chr_LG17-CM007377.1:21010641..21011072+ (Lupinus angustifolius
ATGGGAAATTGCTTCTTCATTTCCTCCAATTCTAACCCTGTTCACACAGT
GAAGCTCATCATAGTACCCGAAGGGAAGTTACGCGAATTCTCATATCATG
TTAAAGTTTCATCTTTATTACAAAAATACCCCACCACCTTCATATGTAAC
TCCGATGACATGGACTTCAACGACGTCGTAAAAGCCATCGATAGAGACCA
AATGTTACAACTGGGTCATCTCTATTTCGCTATTCCCCTAAGTGAATTGG
AGAGGAAATTGAAAGCAGAAGAAATGGTTGTATTAGCAGTCAAGGCTAGC
ATGGTGATCAGGAAGAGTGGTAGAAAGAAATGTGGGTTTCGACGGAAAAG
GGTTGTCGAGTTTTCCTACGATGAGGGTGGAAAGCGTAGTCGAAGTGTGG
CCTCAGAAAACAGTATCAATGTTGAGTCTTAG
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR025322PADRE_dom