rna-TanjilR_07580

Transcript Overview
Namerna-TanjilR_07580
Unique Namerna-TanjilR_07580_La_Tanjil_v1.0
TypemRNA
OrganismLupinus angustifolius (blue lupin)
Sequence length873
Producthypothetical protein
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr_LG18-CM007378.1supercontigChr_LG18-CM007378.1:16534023..16534895 +Lupinus angustifolius L. Tanjil genome v1.0n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Lupinus angustifolius L. Tanjil genome v1.02019-09-17
InterProScan: L. angustifolius cv. Tanjil genome v1.02020-01-28
BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot2020-01-28
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
ananR418Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ananR426Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancaiR0676Cicer arietinum ICC 4958 genome v2Cicer arietinum
ancaR0525Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ancaR0560Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ancrR0693Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
anpsR0462Pisum sativum Cameor genome v1aPisum sativum
anpvR0583Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
anvuR0495Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
anasR0605Vigna angularis Jingnong 6 genome v1.1Vigna angularis
anzwsR0513Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
antifR0516Vicia faba cv. Tiffany genome v1.0Vicia faba
anvfhR0512Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
anvssR0609Vicia sativa cv. Studenica genome v1.0Vicia sativa
ancanR0473Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
ancanR0510Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
anavjR0570Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
anavjR0587Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
ancarR0513Cicer arietinum
ancarR0552Cicer arietinum
anccaR0515Cajanus cajan cv. Asha genome v2.0Cajanus cajan
anvumR0588Vigna umbellata FF25 genome v1.0Vigna umbellata
anvvaR0559Vicia villosa cv. AU Merit genome v1.0Vicia villosa
anvasR0598Vigna angularis cv. Shumari genome v1.a1Vigna angularis
anvstR0590Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
anvasR0625Vigna angularis cv. Shumari genome v1.a1Vigna angularis
anpvfR0603Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris

Orthologs
Gene/TranscriptAssemblySpecies
LR48_mrnaVigan02g234200Vigna angularis Jingnong 6 genome v1.1Vigna angularis
Vigan.08G053100.01Vigna angularis cv. Shumari genome v1.a1Vigna angularis
Va02G067710.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
Ca_04672Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
Psat6g210680.1Pisum sativum Cameor genome v1aPisum sativum
rna-XM_004496753.3Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
rna-TanjilR_19544Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
gene-TanjilG_07580gene-TanjilG_07580_La_Tanjil_v1.0Lupinus angustifoliusgene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna-TanjilR_07580rna-TanjilR_07580_La_Tanjil_v1.0-proteinLupinus angustifoliuspolypeptide
rna-TanjilR_07580_La_Tanjil_v1.0rna-TanjilR_07580_La_Tanjil_v1.0Lupinus angustifoliuspolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
rna-TanjilR_07580_La_Tanjil_v1.0-exon-Chr_LG18-CM007378.1_La_Tanjil_v1.0-1579734366:16534023..16534202rna-TanjilR_07580_La_Tanjil_v1.0-exon-Chr_LG18-CM007378.1_La_Tanjil_v1.0-1579734366:16534023..16534202Lupinus angustifoliusexon
rna-TanjilR_07580_La_Tanjil_v1.0-exon-Chr_LG18-CM007378.1_La_Tanjil_v1.0-1579734366:16534592..16534699rna-TanjilR_07580_La_Tanjil_v1.0-exon-Chr_LG18-CM007378.1_La_Tanjil_v1.0-1579734366:16534592..16534699Lupinus angustifoliusexon
rna-TanjilR_07580_La_Tanjil_v1.0-exon-Chr_LG18-CM007378.1_La_Tanjil_v1.0-1579734366:16534773..16534895rna-TanjilR_07580_La_Tanjil_v1.0-exon-Chr_LG18-CM007378.1_La_Tanjil_v1.0-1579734366:16534773..16534895Lupinus angustifoliusexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
rna-TanjilR_07580_La_Tanjil_v1.0-CDS-Chr_LG18-CM007378.1_La_Tanjil_v1.0-1579734366:16534023..16534202rna-TanjilR_07580_La_Tanjil_v1.0-CDS-Chr_LG18-CM007378.1_La_Tanjil_v1.0-1579734366:16534023..16534202Lupinus angustifoliusCDS
rna-TanjilR_07580_La_Tanjil_v1.0-CDS-Chr_LG18-CM007378.1_La_Tanjil_v1.0-1579734366:16534592..16534699rna-TanjilR_07580_La_Tanjil_v1.0-CDS-Chr_LG18-CM007378.1_La_Tanjil_v1.0-1579734366:16534592..16534699Lupinus angustifoliusCDS
rna-TanjilR_07580_La_Tanjil_v1.0-CDS-Chr_LG18-CM007378.1_La_Tanjil_v1.0-1579734366:16534773..16534895rna-TanjilR_07580_La_Tanjil_v1.0-CDS-Chr_LG18-CM007378.1_La_Tanjil_v1.0-1579734366:16534773..16534895Lupinus angustifoliusCDS


Homology
The following BLAST results are available for this feature:
BLAST of rna-TanjilR_07580 vs.
Analysis Date: 2020-01-28 (BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
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Sequences
The following sequences are available for this feature:

mRNA sequence

>rna-TanjilR_07580_La_Tanjil_v1.0 ID=rna-TanjilR_07580_La_Tanjil_v1.0; Name=rna-TanjilR_07580; organism=Lupinus angustifolius; type=mRNA; length=873bp
ATGACACCTACATCAGTGCTTGAAGATCTAAAGAAAAGCAACAATGGACC
CGAcgaagaaatatattttaatgaagaagaaagacgCTTCCCAAACAGAA
ATTCTGTCCAAACCAATATTGAGAGGAGTCTAGACAATCAGAGGGAGCGA
TCTATGGCCCTCAACAGTGAAGGTCTTGAGGTTGATTCATTATCTTTACA
tctcttaaataataatatatcaaataattcaCCATTGATGAAGTATAGCA
CTAGCTTTCATTGATTGTAGTTTGTTGAATCATATGTGGAGAAAGCAAGC
ATAAGAAATTGATAACAAAATGATGTATATATTCAATGCCTTTCTTTTGC
ATTGAATGTGAATAGTGACAGGACTGGTTAGCAGTTGTAGCACTTACATA
ATGTGAGTCTTTTAGCTAATAGGACCTTGATCACATCTGTCCTCGCTGCA
GAATCAGATTTTATCATCTAGTATATTGAATTGAACTTTGAATACTTGGA
TATAATTAACATGTTTTCTTTTTGGATGAGATTAAGGGAAATCACTTGTG
TTATTCATATCTATTTCAGGGCTTGATCCCTCGGGCTAGACTTTTGTTGA
CTCTTGGAGGAACATTCTTCTTAGCATTTTGGCCATTCATCCTCCTAACT
GTTGCATCCTTTTCTGCTCTCTACTTTGTAAGCTGTTAACCTTattctca
ctatttttctttgAAGAACTGGGTTTGATCCTTTAGTTTTCCTCTCGCAG
TATTTTGGGCCGATATTCATCCACGATGGAAGCAATATGCATATATCGCC
TCCACAATATGTGGACCCTTATGAACTCCTAGAAGATGAAAGGATATCAC
AGATTGCACGTCCATTAAATTAA
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protein sequence of rna-TanjilR_07580_La_Tanjil_v1.0

>rna-TanjilR_07580_La_Tanjil_v1.0 ID=rna-TanjilR_07580_La_Tanjil_v1.0; Name=rna-TanjilR_07580_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=136bp
MTPTSVLEDLKKSNNGPDEEIYFNEEERRFPNRNSVQTNIERSLDNQRER
SMALNSEGLEGLIPRARLLLTLGGTFFLAFWPFILLTVASFSALYFYFGP
IFIHDGSNMHISPPQYVDPYELLEDERISQIARPLN
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mRNA from alignment at Chr_LG18-CM007378.1:16534023..16534895+

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna-TanjilR_07580_La_Tanjil_v1.0 ID=rna-TanjilR_07580_La_Tanjil_v1.0; Name=rna-TanjilR_07580; organism=Lupinus angustifolius; type=mRNA; length=873bp; location=Sequence derived from: Chr_LG18-CM007378.1:16534023..16534895+ (Lupinus angustifolius
ATGACACCTACATCAGTGCTTGAAGATCTAAAGAAAAGCAACAATGGACC
CGAcgaagaaatatattttaatgaagaagaaagacgCTTCCCAAACAGAA
ATTCTGTCCAAACCAATATTGAGAGGAGTCTAGACAATCAGAGGGAGCGA
TCTATGGCCCTCAACAGTGAAGGTCTTGAGGTTGATTCATTATCTTTACA
tctcttaaataataatatatcaaataattcaCCATTGATGAAGTATAGCA
CTAGCTTTCATTGATTGTAGTTTGTTGAATCATATGTGGAGAAAGCAAGC
ATAAGAAATTGATAACAAAATGATGTATATATTCAATGCCTTTCTTTTGC
ATTGAATGTGAATAGTGACAGGACTGGTTAGCAGTTGTAGCACTTACATA
ATGTGAGTCTTTTAGCTAATAGGACCTTGATCACATCTGTCCTCGCTGCA
GAATCAGATTTTATCATCTAGTATATTGAATTGAACTTTGAATACTTGGA
TATAATTAACATGTTTTCTTTTTGGATGAGATTAAGGGAAATCACTTGTG
TTATTCATATCTATTTCAGGGCTTGATCCCTCGGGCTAGACTTTTGTTGA
CTCTTGGAGGAACATTCTTCTTAGCATTTTGGCCATTCATCCTCCTAACT
GTTGCATCCTTTTCTGCTCTCTACTTTGTAAGCTGTTAACCTTattctca
ctatttttctttgAAGAACTGGGTTTGATCCTTTAGTTTTCCTCTCGCAG
TATTTTGGGCCGATATTCATCCACGATGGAAGCAATATGCATATATCGCC
TCCACAATATGTGGACCCTTATGAACTCCTAGAAGATGAAAGGATATCAC
AGATTGCACGTCCATTAAATTAA
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Coding sequence (CDS) from alignment at Chr_LG18-CM007378.1:16534023..16534895+

>rna-TanjilR_07580_La_Tanjil_v1.0 ID=rna-TanjilR_07580_La_Tanjil_v1.0; Name=rna-TanjilR_07580; organism=Lupinus angustifolius; type=CDS; length=411bp; location=Sequence derived from: Chr_LG18-CM007378.1:16534023..16534895+ (Lupinus angustifolius
ATGACACCTACATCAGTGCTTGAAGATCTAAAGAAAAGCAACAATGGACC
CGAcgaagaaatatattttaatgaagaagaaagacgCTTCCCAAACAGAA
ATTCTGTCCAAACCAATATTGAGAGGAGTCTAGACAATCAGAGGGAGCGA
TCTATGGCCCTCAACAGTGAAGGTCTTGAGGGCTTGATCCCTCGGGCTAG
ACTTTTGTTGACTCTTGGAGGAACATTCTTCTTAGCATTTTGGCCATTCA
TCCTCCTAACTGTTGCATCCTTTTCTGCTCTCTACTTTTATTTTGGGCCG
ATATTCATCCACGATGGAAGCAATATGCATATATCGCCTCCACAATATGT
GGACCCTTATGAACTCCTAGAAGATGAAAGGATATCACAGATTGCACGTC
CATTAAATTAA
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