rna-TanjilR_13363
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Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Homology
BLAST of rna-TanjilR_13363 vs. DB:Swiss
Match: RS11_EUPES (40S ribosomal protein S11 OS=Euphorbia esula OX=3993 GN=RPS11 PE=2 SV=1) HSP 1 Score: 107.842 bits (268), Expect = 3.109e-48 Identity = 50/55 (90.91%), Postives = 52/55 (94.55%), Query Frame = 1
Query: 694 RLALTGTYIDKKCPFTGNVSIRGRILSGTCHSAKMNRTIIVRRNYLHFIKKYQRY 858
R A+ GTYIDKKCPFTG VSIRGRIL+GTCHSAKMNRTIIVRRNYLHFIKKYQRY
Sbjct: 47 REAIDGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFIKKYQRY 101 HSP 2 Score: 107.071 bits (266), Expect = 3.109e-48 Identity = 57/91 (62.64%), Postives = 58/91 (63.74%), Query Frame = 2
Query: 953 RYEKRHSNIPAHVSPCFRVKEGDHVIIGQCR*AFV*RSYCCILCRY*YKYLAYFPFRYNICRPISKTVRFNVLKVIPAGSSGGAKKAFTGI 1225
RYEKRHSNIPAHVSPCFRVKEGDHVIIGQ CRP+SKTVRFNVLKVIPAGSSGG KKAFT I
Sbjct: 100 RYEKRHSNIPAHVSPCFRVKEGDHVIIGQ-------------------------------CRPLSKTVRFNVLKVIPAGSSGGVKKAFTAI 159
BLAST of rna-TanjilR_13363 vs. DB:Swiss
Match: RS11_SOYBN (40S ribosomal protein S11 OS=Glycine max OX=3847 GN=RPS11 PE=2 SV=2) HSP 1 Score: 110.538 bits (275), Expect = 4.294e-48 Identity = 51/55 (92.73%), Postives = 53/55 (96.36%), Query Frame = 1
Query: 694 RLALTGTYIDKKCPFTGNVSIRGRILSGTCHSAKMNRTIIVRRNYLHFIKKYQRY 858
R A+ GTYIDKKCPFTGNVSIRGRIL+GTCHSAKMNRTIIVRRNYLHFIKKYQRY
Sbjct: 47 REAIEGTYIDKKCPFTGNVSIRGRILAGTCHSAKMNRTIIVRRNYLHFIKKYQRY 101 HSP 2 Score: 103.605 bits (257), Expect = 4.294e-48 Identity = 55/91 (60.44%), Postives = 58/91 (63.74%), Query Frame = 2
Query: 953 RYEKRHSNIPAHVSPCFRVKEGDHVIIGQCR*AFV*RSYCCILCRY*YKYLAYFPFRYNICRPISKTVRFNVLKVIPAGSSGGAKKAFTGI 1225
RYEKRHSNIPAH+SP FRVKEGDHVIIGQ CRP+SKTVRFNVLKVIPAGSS GAKKAFTG+
Sbjct: 100 RYEKRHSNIPAHISPAFRVKEGDHVIIGQ-------------------------------CRPLSKTVRFNVLKVIPAGSSSGAKKAFTGM 159
BLAST of rna-TanjilR_13363 vs. DB:Swiss
Match: RS113_ARATH (40S ribosomal protein S11-3 OS=Arabidopsis thaliana OX=3702 GN=RPS11C PE=2 SV=2) HSP 1 Score: 102.449 bits (254), Expect = 4.686e-45 Identity = 54/91 (59.34%), Postives = 57/91 (62.64%), Query Frame = 2
Query: 953 RYEKRHSNIPAHVSPCFRVKEGDHVIIGQCR*AFV*RSYCCILCRY*YKYLAYFPFRYNICRPISKTVRFNVLKVIPAGSSGGAKKAFTGI 1225
RYEKRHSNIPAHVSPCFRVKEGDHVIIGQ CRP+SKTVRFNVLKVIPAG+S KKAFTG+
Sbjct: 100 RYEKRHSNIPAHVSPCFRVKEGDHVIIGQ-------------------------------CRPLSKTVRFNVLKVIPAGASAFGKKAFTGV 159 HSP 2 Score: 101.679 bits (252), Expect = 4.686e-45 Identity = 46/55 (83.64%), Postives = 49/55 (89.09%), Query Frame = 1
Query: 694 RLALTGTYIDKKCPFTGNVSIRGRILSGTCHSAKMNRTIIVRRNYLHFIKKYQRY 858
R A+ G YID KCPFTG VSIRGRIL+GTCHSAKM RTIIVRRNYLHF+KKYQRY
Sbjct: 47 REAIDGAYIDSKCPFTGTVSIRGRILAGTCHSAKMQRTIIVRRNYLHFVKKYQRY 101
BLAST of rna-TanjilR_13363 vs. DB:Swiss
Match: RS111_ARATH (40S ribosomal protein S11-1 OS=Arabidopsis thaliana OX=3702 GN=RPS11A PE=2 SV=1) HSP 1 Score: 101.679 bits (252), Expect = 8.697e-44 Identity = 45/55 (81.82%), Postives = 50/55 (90.91%), Query Frame = 1
Query: 694 RLALTGTYIDKKCPFTGNVSIRGRILSGTCHSAKMNRTIIVRRNYLHFIKKYQRY 858
R A+ G Y+DKKCPFTG VSIRGRIL+GTCHSAKM RTIIVRR+YLHF+KKYQRY
Sbjct: 47 REAIDGAYVDKKCPFTGTVSIRGRILAGTCHSAKMQRTIIVRRDYLHFVKKYQRY 101 HSP 2 Score: 98.5969 bits (244), Expect = 8.697e-44 Identity = 54/92 (58.70%), Postives = 57/92 (61.96%), Query Frame = 2
Query: 953 RYEKRHSNIPAHVSPCFRVKEGDHVIIGQCR*AFV*RSYCCILCRY*YKYLAYFPFRYNICRPISKTVRFNVLKVIPAGSSGG-AKKAFTGI 1225
RYEKRHSNIPAHVSPCFRVKEGDH+IIGQ CRP+SKTVRFNVLKVIPAGSS KKAFTG+
Sbjct: 100 RYEKRHSNIPAHVSPCFRVKEGDHIIIGQ-------------------------------CRPLSKTVRFNVLKVIPAGSSSSFGKKAFTGM 160
BLAST of rna-TanjilR_13363 vs. DB:Swiss
Match: RS112_ARATH (40S ribosomal protein S11-2 OS=Arabidopsis thaliana OX=3702 GN=RPS11B PE=2 SV=2) HSP 1 Score: 101.679 bits (252), Expect = 1.787e-43 Identity = 46/55 (83.64%), Postives = 51/55 (92.73%), Query Frame = 1
Query: 694 RLALTGTYIDKKCPFTGNVSIRGRILSGTCHSAKMNRTIIVRRNYLHFIKKYQRY 858
R A+ GTYID+KCPFTG VSIRGRILSGTCHSAKM RTIIVRR+YLHF+KKY+RY
Sbjct: 47 REAIEGTYIDQKCPFTGTVSIRGRILSGTCHSAKMQRTIIVRRDYLHFVKKYRRY 101 HSP 2 Score: 97.4413 bits (241), Expect = 1.787e-43 Identity = 53/91 (58.24%), Postives = 55/91 (60.44%), Query Frame = 2
Query: 953 RYEKRHSNIPAHVSPCFRVKEGDHVIIGQCR*AFV*RSYCCILCRY*YKYLAYFPFRYNICRPISKTVRFNVLKVIPAGSSGGAKKAFTGI 1225
RYEKRHSNIPAHVSPCFRVKEGD V IGQ CRP+SKTVRFNVLKVIPAGSS KKAFTG+
Sbjct: 100 RYEKRHSNIPAHVSPCFRVKEGDRVTIGQ-------------------------------CRPLSKTVRFNVLKVIPAGSSSIGKKAFTGM 159
BLAST of rna-TanjilR_13363 vs. DB:Swiss
Match: RS11_MAIZE (40S ribosomal protein S11 OS=Zea mays OX=4577 GN=RPS11 PE=2 SV=1) HSP 1 Score: 105.916 bits (263), Expect = 1.801e-40 Identity = 48/55 (87.27%), Postives = 52/55 (94.55%), Query Frame = 1
Query: 694 RLALTGTYIDKKCPFTGNVSIRGRILSGTCHSAKMNRTIIVRRNYLHFIKKYQRY 858
R A+ GTYIDKKCPFTG VSIRGRI++GTCHSAKMNRTIIVRRNYLHF+KKYQRY
Sbjct: 47 REAIEGTYIDKKCPFTGTVSIRGRIIAGTCHSAKMNRTIIVRRNYLHFVKKYQRY 101 HSP 2 Score: 82.8037 bits (203), Expect = 1.801e-40 Identity = 51/90 (56.67%), Postives = 55/90 (61.11%), Query Frame = 2
Query: 953 RYEKRHSNIPAHVSPCFRVKEGDHVIIGQCR*AFV*RSYCCILCRY*YKYLAYFPFRYNICRPISKTVRFNVLKVIPAGSSGGAKKAFTG 1222
RYEKRHSNIPAH+SPCFRVKEGDHVIIGQ CRP+SKTVRFNV+KVIPAGS+ KKAFT
Sbjct: 100 RYEKRHSNIPAHISPCFRVKEGDHVIIGQ-------------------------------CRPLSKTVRFNVVKVIPAGSAAAGKKAFTA 158
BLAST of rna-TanjilR_13363 vs. DB:Swiss
Match: RS11_DUNTE (40S ribosomal protein S11 OS=Dunaliella tertiolecta OX=3047 GN=RPS11 PE=2 SV=1) HSP 1 Score: 87.8113 bits (216), Expect = 4.295e-35 Identity = 40/55 (72.73%), Postives = 46/55 (83.64%), Query Frame = 1
Query: 694 RLALTGTYIDKKCPFTGNVSIRGRILSGTCHSAKMNRTIIVRRNYLHFIKKYQRY 858
+ A+ G Y+DKKCPFTGNVSIRGRIL+G S+KM RTIIVRR+YLHFI KY RY
Sbjct: 46 KEAIDGNYVDKKCPFTGNVSIRGRILTGVVKSSKMMRTIIVRRDYLHFIPKYARY 100 HSP 2 Score: 83.1889 bits (204), Expect = 4.295e-35 Identity = 46/92 (50.00%), Postives = 56/92 (60.87%), Query Frame = 2
Query: 953 RYEKRHSNIPAHVSPCFRVKEGDHVIIGQCR*AFV*RSYCCILCRY*YKYLAYFPFRYNICRPISKTVRFNVLKVIP-AGSSGGAKKAFTGI 1225
RYEKRH+NIPAHVSPCFRV++GD VIIGQ CRP+SKT+RFNVL+VIP AG++G KK+F+G
Sbjct: 99 RYEKRHTNIPAHVSPCFRVRDGDTVIIGQ-------------------------------CRPLSKTIRFNVLRVIPQAGATG--KKSFSGF 157
BLAST of rna-TanjilR_13363 vs. DB:Swiss
Match: RS11_DICDI (40S ribosomal protein S11 OS=Dictyostelium discoideum OX=44689 GN=rps11 PE=1 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 1.536e-29 Identity = 38/53 (71.70%), Postives = 44/53 (83.02%), Query Frame = 1
Query: 700 ALTGTYIDKKCPFTGNVSIRGRILSGTCHSAKMNRTIIVRRNYLHFIKKYQRY 858
A+ GTYIDKKCPFT +VSIRG IL GT S KM RT++VRRNYLH+IKKY R+
Sbjct: 48 AIEGTYIDKKCPFTSDVSIRGAILRGTVISTKMRRTLVVRRNYLHYIKKYNRF 100 HSP 2 Score: 68.5514 bits (166), Expect = 1.536e-29 Identity = 40/88 (45.45%), Postives = 45/88 (51.14%), Query Frame = 2
Query: 953 RYEKRHSNIPAHVSPCFRVKEGDHVIIGQCR*AFV*RSYCCILCRY*YKYLAYFPFRYNICRPISKTVRFNVLKVIPAGSSGGAKKAF 1216
R+EKRHSNIPAHVSP F VKEGD V IGQ CRP+SKTVRFNV+K + +S KAF
Sbjct: 99 RFEKRHSNIPAHVSPAFNVKEGDSVTIGQ-------------------------------CRPLSKTVRFNVIKHDISAASKKQFKAF 155
BLAST of rna-TanjilR_13363 vs. DB:Swiss
Match: RS11B_YEAST (40S ribosomal protein S11-B OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=RPS11B PE=1 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 2.115e-28 Identity = 37/55 (67.27%), Postives = 46/55 (83.64%), Query Frame = 1
Query: 694 RLALTGTYIDKKCPFTGNVSIRGRILSGTCHSAKMNRTIIVRRNYLHFIKKYQRY 858
+ A+ G+YIDKKCPFTG VSIRG+IL+GT S KM+RTI++RR YLH+I KY RY
Sbjct: 46 KTAIEGSYIDKKCPFTGLVSIRGKILTGTVVSTKMHRTIVIRRAYLHYIPKYNRY 100 HSP 2 Score: 65.4698 bits (158), Expect = 2.115e-28 Identity = 38/88 (43.18%), Postives = 45/88 (51.14%), Query Frame = 2
Query: 953 RYEKRHSNIPAHVSPCFRVKEGDHVIIGQCR*AFV*RSYCCILCRY*YKYLAYFPFRYNICRPISKTVRFNVLKVIPAGSSGGAKKAF 1216
RYEKRH N+P HVSP FRV+ GD V +GQ CRPISKTVRFNV+KV + ++G A K F
Sbjct: 99 RYEKRHKNVPVHVSPAFRVQVGDIVTVGQ-------------------------------CRPISKTVRFNVVKV--SAAAGKANKQF 153
BLAST of rna-TanjilR_13363 vs. DB:Swiss
Match: RS11A_YEAST (40S ribosomal protein S11-A OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=RPS11A PE=1 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 2.115e-28 Identity = 37/55 (67.27%), Postives = 46/55 (83.64%), Query Frame = 1
Query: 694 RLALTGTYIDKKCPFTGNVSIRGRILSGTCHSAKMNRTIIVRRNYLHFIKKYQRY 858
+ A+ G+YIDKKCPFTG VSIRG+IL+GT S KM+RTI++RR YLH+I KY RY
Sbjct: 46 KTAIEGSYIDKKCPFTGLVSIRGKILTGTVVSTKMHRTIVIRRAYLHYIPKYNRY 100 HSP 2 Score: 65.4698 bits (158), Expect = 2.115e-28 Identity = 38/88 (43.18%), Postives = 45/88 (51.14%), Query Frame = 2
Query: 953 RYEKRHSNIPAHVSPCFRVKEGDHVIIGQCR*AFV*RSYCCILCRY*YKYLAYFPFRYNICRPISKTVRFNVLKVIPAGSSGGAKKAF 1216
RYEKRH N+P HVSP FRV+ GD V +GQ CRPISKTVRFNV+KV + ++G A K F
Sbjct: 99 RYEKRHKNVPVHVSPAFRVQVGDIVTVGQ-------------------------------CRPISKTVRFNVVKV--SAAAGKANKQF 153 The following BLAST results are available for this feature:
BLAST of rna-TanjilR_13363 vs. DB:Swiss
Analysis Date: 2020-01-28 (BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot) Total hits: 10
InterPro
Analysis Name: InterProScan: L. angustifolius cv. Tanjil genome v1.0
Date Performed: 2020-01-28
Sequences
The
following sequences are available for this feature:
mRNA sequence >rna-TanjilR_13363_La_Tanjil_v1.0 ID=rna-TanjilR_13363_La_Tanjil_v1.0; Name=rna-TanjilR_13363; organism=Lupinus angustifolius; type=mRNA; length=1228bpback to top protein sequence of rna-TanjilR_13363_La_Tanjil_v1.0 >rna-TanjilR_13363_La_Tanjil_v1.0 ID=rna-TanjilR_13363_La_Tanjil_v1.0; Name=rna-TanjilR_13363_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=159bpback to top mRNA from alignment at Chr_LG01-CM007361.1:21602610..21603837+ Legend: mRNApolypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>rna-TanjilR_13363_La_Tanjil_v1.0 ID=rna-TanjilR_13363_La_Tanjil_v1.0; Name=rna-TanjilR_13363; organism=Lupinus angustifolius; type=mRNA; length=1228bp; location=Sequence derived from: Chr_LG01-CM007361.1:21602610..21603837+ (Lupinus angustifoliusback to top Coding sequence (CDS) from alignment at Chr_LG01-CM007361.1:21602610..21603837+ >rna-TanjilR_13363_La_Tanjil_v1.0 ID=rna-TanjilR_13363_La_Tanjil_v1.0; Name=rna-TanjilR_13363; organism=Lupinus angustifolius; type=CDS; length=480bp; location=Sequence derived from: Chr_LG01-CM007361.1:21602610..21603837+ (Lupinus angustifoliusback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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