rna-TanjilR_02518
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Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Homology
BLAST of rna-TanjilR_02518 vs. DB:Swiss
Match: E70A1_ARATH (Exocyst complex component EXO70A1 OS=Arabidopsis thaliana OX=3702 GN=EXO70A1 PE=1 SV=1) HSP 1 Score: 142.124 bits (357), Expect = 2.533e-34 Identity = 150/642 (23.36%), Postives = 272/642 (42.37%), Query Frame = 1
Query: 55 LKTSLQKASAIACAL---------HESELETAFGNIISMQKCSFVNVGDHIDSALCCASAVLRVFEAVRQLENSLLHDIDPSSDLFTYVSDTKKLEEALK-FLTNNCRLAVEWFKDILLLLQDKAITNVNENYLLNVKKCLRILHELEVMEEGSRLNGGL-----------LCRAFDKLEIEFHGLLAANTMPCLSLASSVGHQPFPDSVVVKLQTIVERLNANDRLDKCKSMYVEVRGTNAQTSIKTLDFSYL---EILIAELDNIPSYIDQWGLHLELVVKNVVKFEYKLCSKVFEKIGKEECIECFAKIAIESGILSLLQFGRNVCXXXXXXXXXXXXXHIFKVLNALRLNFNQLFSAKACEEIRTVTKDLIKEVVNGASELFWQLAAQVKSLRPNSPPTDGSVPSVVSFVTEYCNQLLGDAYRPHLTQVLEIHHSWRNQVYEEGIVFTQVYNIMKEIAINLDAWSKSYADINLSYIFMMNN-HCHFSNLRGTVLGDVMGDSWLGAHEQYKDYYAALYLKNSWENLLPILIVKKVTNKD----------------LVHRLKAFNLAFDERYKKESNWVITDEILRQNICKHLVEGIVQTYKAYMKNYSLSIENDARATKHIKYSVQSLEGVISSLFQPK 1857
++ SLQK+ I + S LETA ++ + ++ID L A +L F+ +RQ E +L P DL +Y+ +L + ++ F++N + + + L KA + + E + ++L E RL GL AA T+P L P V+ L + +++ + +Y + R + S+K L L ++ + + + + I W + + VK + E ++C ++F +CFA++ + S + LL FG + SK +P KL LL +++++ L +F KAC EIR L K + A E F V+ + DG+V + S+V Y L Y+ L Q+ + N + + IM+ + NLD SK Y D L+++F+MNN H ++R + D++GD W+ H + +A Y + +W +L + +T+ L R K FN+ FDE ++++S W + D LR+++ + E ++ Y++++K + +E+ K+IKY+ + LE ++ LF+ K
Sbjct: 17 MRASLQKSQTITDNVVSILGSFDSRLSALETAM-RPTQIRTHAIRKAHENIDRTLKAAEVILSQFDLLRQAETKVLKG--PHEDLESYLDAIAQLRKIIRYFMSNKSFKSSDGVLNHANSLLAKAQSKLEEEFK-------QLLASYSKAVEPDRLFDGLPNSLRPSSDGDGGGKPHGGHHNDDAETAAYTLPIL----------IPSRVLPLLHDLAQQMVQAGHQQQLLQIYRDTRSFVLEESLKKLGVEKLSKEDVQRMQWEVLEAKIGNWIHFMRIAVKLLFAGERQVCDQIFRGFD-SLSDQCFAEVTV-SSVSMLLSFGDAIARSKRSPEKLFVLLDMYEIMRELHTEIETIFKGKACLEIRDSATGLTKRLAQTAQETFGDFEEAVEKDATKTAVLDGTVHPLTSYVINYVKFLFD--YQTTLKQLF---LEFGNGDDSNSQLASVTMRIMQALQNNLDGKSKQYKDPALTHLFLMNNIHYMVRSVRRSEAKDLLGDDWVQRHRRIVQQHANQYKRVAWTKILQSSSAQGLTSSGGGSLEGGNSSGVSRGLLKERFKMFNMQFDELHQRQSQWTVPDTELRESLRLAVAEVLLPAYRSFLKRFGPLVESGKNPQKYIKYTAEDLERLLGELFEGK 631
BLAST of rna-TanjilR_02518 vs. DB:Swiss
Match: E70E2_ARATH (Exocyst complex component EXO70E2 OS=Arabidopsis thaliana OX=3702 GN=EXO70E2 PE=1 SV=1) HSP 1 Score: 106.686 bits (265), Expect = 8.797e-23 Identity = 88/382 (23.04%), Postives = 181/382 (47.38%), Query Frame = 1
Query: 742 FSYLEILIAELDNIPSYIDQWGLHLELVVKNVVKFEYKLCSKVFEKIGKEECIE--CFAKIAIESGILSLLQFGRNVCXXXXXXXXXXXXXHIFKVLNALRLNFNQLFSAKACEEIRTVTKDLIKEVVNGASELFWQLAAQVKSLRPNSPPTDGSVPSVVSFVTEYCNQLLGDAYRPHLTQVLE---IHHSWRNQVYEEGIVFT------QVYNIMKEIAINLDAWSKSYADINLSYIFMMNNHCHF-SNLRGTVLGDVMGDSWLGAHEQYKDYYAALYLKNSWENLLPILIVKKVTNKDLVHRLKAFNLAFDERYKKESNWVITDEILRQNICKHLVEGIVQTYKAYMKNYSLSIENDARATKHIKYSVQSLEGVISSLFQ 1851
FS +++L + +++ + +W ++++ + + E +LC ++ +G E I CF +I+ + ILSLL FG V P L + L +++V + ++ + LF + +R +L K++ + + F + + S P G + + +V Y L Y L +L+ + S + E+ + T + +I+ + +L+ ++ YAD L IF+MNN + ++G+ L + GD W+ H Y +++W ++L +L + + L R + F+LAFD+ YK ++ W + D LR ++ +VQ+Y+ ++ ++ I KHI+Y+ + +E ++ LF+
Sbjct: 255 FSCVDVLRMDWEDLNGAMRKWTKVVKIITQVYLASEKQLCDQI---LGDFESISTACFIEIS-KDAILSLLNFGEAVVLRSCKPEMLERFLSMYEVSAEILVDVDNLFPDETGSSLRIAFHNLSKKLADHTTTTFLKFKDAIASDESTRPFHGGGIHHLTRYVMNYLKLL--PEYTDSLNSLLQNIHVDDSIPEKTGEDVLPSTFSPMARHLRSIVTTLESSLERKAQLYADEALKSIFLMNNFRYMVQKVKGSELRRLFGDEWIRKHIASYQCNVTNYERSTWSSILALLRDNNDSVRTLRERCRLFSLAFDDVYKNQTRWSVPDSELRDDLHISTSVKVVQSYRGFLGRNAVRI-----GEKHIRYTCEDIENMLLDLFE 625
BLAST of rna-TanjilR_02518 vs. DB:Swiss
Match: E70B2_ARATH (Exocyst complex component EXO70B2 OS=Arabidopsis thaliana OX=3702 GN=EXO70B2 PE=1 SV=1) HSP 1 Score: 101.679 bits (252), Expect = 3.153e-21 Identity = 98/418 (23.44%), Postives = 176/418 (42.11%), Query Frame = 1
Query: 616 SVVVKLQTIVERLNANDRLDKCKSMYVEVRGTNAQTSIKTLDFSYL---EILIAELDNIPSYIDQWGLHLELVVKNVVKFEYKLCSKVFEKIGKEECIECFAKIAIESGILSLLQFGRNVCXXXXXXXXXXXXXHIFKVLNALRLNFNQLFSAKACEEIRTVTKDLIKEVVNGASELFWQLAAQVKSLRPNSPPTDGSVPSVVSFVTEYCNQLLGDAYRPHLTQVLEIHHSWRNQVYEEGIVFTQVYNIMKEIAINLDAWSKSYADINLSYIFMMNNHCH-FSNLRGTVLGDVMGDSWLGAHEQYKDYYAALYLKNSWENLLPILIVKKVTNKDLVHRLKAFNLAFDERYKKESNWVITDEILRQNICKHLVEGIVQ-TYKAYMKNYSLSIE-NDARATKHIKYSVQSLEGVISSLFQ 1851
SV+ L I R+ A +C +Y R + S+ L L E+ + ++ ID+W + L+ E LC +VF + + LL F + P +L K++ +++ + L LFS + C +R + K + +F +L ++ P + G + + +V Y R L Q+L+ + + + Q+ +++ + NL+ ++Y D +L ++FMMNN + + LG V+G+ W+ H Y + Y ++SW ++ +L K LV L+ F FDE K +S WV++D LR+ + + V GIV Y +++ S E N R I Y+V+ +E +I LF+
Sbjct: 184 SVIGDLNAIAVRMVAGGFAKECSRVYSSRRREFLEESLSRLHLRGLSMEEVQESPWQDLEDEIDRWIKAVTLIFHVFFPSERLLCDRVFSDLPVSSVTDLSFMEVCRGTTTQLLNFADAIALGSRLPERLFKVVDLYEAMQDLIPKMETLFSDRYCSPLRHEALAIHKRLGEAIRGIFMELENLIRRDPPKTAFPGGGIHPITRYVMNYLRAAC--KSRQSLEQILD--QTGNETGSDTRPLSVQIIWVLELLESNLEGKKRTYRDPSLCFLFMMNNDKYILDKAKDNELGLVLGEDWIVKHAAKLRQYHSNYRRSSWNQVVGLLRTDGPYPK-LVENLRLFKSQFDEVCKVQSQWVVSDGQLREEL-RSSVAGIVSPAYSNFIRRLKESPEINGRRGEPFIPYTVEDVEFIIKRLFK 595
BLAST of rna-TanjilR_02518 vs. DB:Swiss
Match: E70B1_ARATH (Exocyst complex component EXO70B1 OS=Arabidopsis thaliana OX=3702 GN=EXO70B1 PE=1 SV=1) HSP 1 Score: 100.523 bits (249), Expect = 9.321e-21 Identity = 102/427 (23.89%), Postives = 181/427 (42.39%), Query Frame = 1
Query: 607 FPDSVVVKLQTIVERLNANDRLDKCKSMYVEVRGTNAQTSIKTLDFSYLEILIAELDNIP-----SYIDQWGLHLELVVKNVVKFEYKLCSKVFEKIGKEECIECFAKIAIESGILSLLQFGRNVCXXXXXXXXXXXXXHIFKVLNALRLNFNQLFSAKACEEIRTVTKDLIKEVVNGASELFWQLAAQVKSLRPNSPPTDGSVPSVVSFVTEYCNQLLGDAYRPHLTQVLEIHHSWRNQVYEEGIVFTQVYNIMKEIAINLDAWSKSYADINLSYIFMMNNHCHF-SNLRGTVLGDVMGDSWLGAHEQYKDYYAALYLKNSWENLLPILIVKKVT------NKDLVHRLKAFNLAFDERYKKESNWVITDEILRQNICKHLVEGIVQTYKAYMKNYSLSIENDARATKHIKYSVQSLEGVISSLFQ 1851
P + + L + +R+ C +Y R + S+ L L I E+ +P ID+W + ++ + E +LC +VF G + + LL F + +P +L K+L +F+ + L F +FS + C +R + K + +F +L ++ + G + + +V Y R L QV E + ++ + ++ Q+ IM+ + NL+ SK Y D L Y+F+MNN + ++ LG ++GD W+ H Y Y ++SW +L +L V K + +LK FN+ FDE K S WV+ DE L++ + L +V Y +++ + + A K+IKY V+ +E I+ LF+
Sbjct: 199 LPSATINDLHEMAKRMLGAGFGKACSHVYSSCRREFLEESMSRLGLQKLSI--EEVHKMPWQELEDEIDRWIKAANVALRILFPSERRLCDRVF--FGFSSAADLSFMEVCRGSTIQLLNFADAIAIGSRSPERLFKVLDVFETMRDLMPEFESVFSDQFCSVLRNEAVTIWKRLGEAIRGIFMELENLIRRDPAKAAVPGGGLHPITRYVMNYLRAAC--RSRQTLEQVFEESNGVPSK--DSTLLTVQMSWIMELLESNLEVKSKVYKDPALCYVFLMNNGRYIVQKVKDGDLGLLLGDDWIRKHNVKVKQYHMNYQRSSWNKMLGLLKVDNTAAGMNGLGKTMKEKLKQFNIQFDEICKVHSTWVVFDEQLKEELKISLARLLVPAYGSFIGRFQNLGDIGKNADKYIKYGVEDIEARINELFK 617
BLAST of rna-TanjilR_02518 vs. DB:Swiss
Match: E70H1_ARATH (Exocyst complex component EXO70H1 OS=Arabidopsis thaliana OX=3702 GN=EXO70H1 PE=1 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 2.338e-10 Identity = 43/162 (26.54%), Postives = 80/162 (49.38%), Query Frame = 1
Query: 1375 LDAWSKSYADINLSYIFMMNN-HCHFSNLRGTVLGDVMGDSWLGAHEQYKDYYAALYLKNSWENLLPILIVKK--VTNKDLVHRLKAFNLAFDERYKKESNWVITDEILRQNICKHLVEGIVQTYKAYMKNYSLSIENDARATKHIKYSVQSLEGVISSLFQ 1851
LD ++ Y D++LSY+F+ NN + T L +++GD WL HE YA Y +W N+ L + ++ ++ + F+ AF+E Y K+S+ V+ + LR + + + +V Y+ + + Y + + +++ +LE IS LF
Sbjct: 448 LDTKAEHYKDVSLSYLFLANNLQIIIETVGSTPLRNLLGDDWLNKHEDKLCAYAGNYEIAAWSNVFMSLPEEPTDLSPEEAKIYFRRFHTAFEEAYMKQSSRVVPNAKLRDELKVSIAKKLVPEYREFYRKYLPMLGQERNIEILVRFKPDNLENYISDLFH 609 The following BLAST results are available for this feature:
BLAST of rna-TanjilR_02518 vs. DB:Swiss
Analysis Date: 2020-01-28 (BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot) Total hits: 5
InterPro
Analysis Name: InterProScan: L. angustifolius cv. Tanjil genome v1.0
Date Performed: 2020-01-28
Sequences
The
following sequences are available for this feature:
mRNA sequence >rna-TanjilR_02518_La_Tanjil_v1.0 ID=rna-TanjilR_02518_La_Tanjil_v1.0; Name=rna-TanjilR_02518; organism=Lupinus angustifolius; type=mRNA; length=1878bpback to top protein sequence of rna-TanjilR_02518_La_Tanjil_v1.0 >rna-TanjilR_02518_La_Tanjil_v1.0 ID=rna-TanjilR_02518_La_Tanjil_v1.0; Name=rna-TanjilR_02518_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=625bpback to top mRNA from alignment at Chr_LG02-CM007362.1:3727828..3729705- Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below.>rna-TanjilR_02518_La_Tanjil_v1.0 ID=rna-TanjilR_02518_La_Tanjil_v1.0; Name=rna-TanjilR_02518; organism=Lupinus angustifolius; type=mRNA; length=1878bp; location=Sequence derived from: Chr_LG02-CM007362.1:3727828..3729705- (Lupinus angustifoliusback to top Coding sequence (CDS) from alignment at Chr_LG02-CM007362.1:3727828..3729705- >rna-TanjilR_02518_La_Tanjil_v1.0 ID=rna-TanjilR_02518_La_Tanjil_v1.0; Name=rna-TanjilR_02518; organism=Lupinus angustifolius; type=CDS; length=1878bp; location=Sequence derived from: Chr_LG02-CM007362.1:3727828..3729705- (Lupinus angustifoliusback to top |