rna-TanjilR_13982
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Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Homology
BLAST of rna-TanjilR_13982 vs. DB:Swiss
Match: CWC21_GIBZE (Pre-mRNA-splicing factor CWC21 OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) OX=229533 GN=CWC21 PE=3 SV=2) HSP 1 Score: 70.0922 bits (170), Expect = 2.015e-12 Identity = 41/102 (40.20%), Postives = 62/102 (60.78%), Query Frame = 1 Query: 1 MYNGIGLQTPRGSGTNGYIQNNKFFVKPKTSKIS-DRSFDSDQGTAGVTRKPNKDILEHDRKRQIQLRLVILEEKLIDQGYSEVEIAQKLDEARNNLIASAN 303
M + +GL TPRGSGT+GY+Q N +KP+ + DS R+P+K ILEHDRKR++++++ L +KL ++ E EI ++ DE R L+A N
Sbjct: 1 MSDNVGLNTPRGSGTSGYVQRNLAHIKPRDYGAPYPKDLDS---LRHKQRQPDKGILEHDRKREVEVKVFDLRDKLEEEEVDEDEIDKRCDELRQKLLAEMN 99
BLAST of rna-TanjilR_13982 vs. DB:Swiss
Match: SRRM2_HUMAN (Serine/arginine repetitive matrix protein 2 OS=Homo sapiens OX=9606 GN=SRRM2 PE=1 SV=2) HSP 1 Score: 74.3294 bits (181), Expect = 5.817e-12 Identity = 49/115 (42.61%), Postives = 71/115 (61.74%), Query Frame = 1 Query: 1 MYNGIGLQTPRGSGTNGYIQNNKFFVKPKTSKISDRSFDSD--QGTAGVTRKPNKDILEHDRKRQIQLRLVILEEKLIDQGYSEVEIAQKLDEARNNLIASANADQESDVNGQNK 339
MYNGIGL TPRGSGTNGY+Q N V+ + + D + + + A + ++PN DIL+H+RKR+++LR + LEE + +QGY E +I +K+ R L+ E DVN K
Sbjct: 1 MYNGIGLPTPRGSGTNGYVQRNLSLVRGRRGERPDYKGEEELRRLEAALVKRPNPDILDHERKRRVELRCLELEEMMEEQGYEEQQIQEKVATFRLMLL-------EKDVNPGGK 108
BLAST of rna-TanjilR_13982 vs. DB:Swiss
Match: SRRM2_MOUSE (Serine/arginine repetitive matrix protein 2 OS=Mus musculus OX=10090 GN=Srrm2 PE=1 SV=3) HSP 1 Score: 73.9442 bits (180), Expect = 7.292e-12 Identity = 48/111 (43.24%), Postives = 69/111 (62.16%), Query Frame = 1 Query: 1 MYNGIGLQTPRGSGTNGYIQNNKFFVKPKTSKISDRSFDSD--QGTAGVTRKPNKDILEHDRKRQIQLRLVILEEKLIDQGYSEVEIAQKLDEARNNLIASANADQESDVN 327
MYNGIGL TPRGSGTNGY+Q N V+ + + D + + A + ++PN DIL+H+RKR+++LR + LEE + +QGY E +I +K+ R L+ E DVN
Sbjct: 1 MYNGIGLPTPRGSGTNGYVQRNLSLVRGRRGERPDYKGEEELRHLEAALVKRPNPDILDHERKRRVELRCLELEEMMEEQGYEEQQIQEKVATFRLMLL-------EKDVN 104
BLAST of rna-TanjilR_13982 vs. DB:Swiss
Match: CWC21_NEUCR (Pre-mRNA-splicing factor cwc-21 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) OX=367110 GN=cwc-21 PE=3 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 2.010e-11 Identity = 43/108 (39.81%), Postives = 66/108 (61.11%), Query Frame = 1 Query: 1 MYNGIGLQTPRGSGTNGYIQNNKFFVKPKTSKIS--DRSFDSDQGTAGVTRKPNKDILEHDRKRQIQLRLVILEEKLIDQGYSEVEIAQKLDEARNNLIASANADQES 318
M + +GL TPRGSGT+GY+Q N +P+ + S + FDS R+P+K +LEHDRKR++++++ L +KL ++G E EI + DE R L+A +Q S
Sbjct: 1 MSDNVGLSTPRGSGTSGYVQRNLAHFRPRDNYQSYPPKDFDS---LKHQPRQPDKGLLEHDRKREVEVKVFELRDKLEEEGVEEDEIETRCDELRRKLLAEMERNQNS 105
BLAST of rna-TanjilR_13982 vs. DB:Swiss
Match: CWC21_CRYNJ (Pre-mRNA-splicing factor CWC21 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) OX=214684 GN=CWC21 PE=3 SV=1) HSP 1 Score: 62.3882 bits (150), Expect = 1.720e-9 Identity = 33/105 (31.43%), Postives = 59/105 (56.19%), Query Frame = 1 Query: 1 MYNGIGLQTPRGSGTNGYIQNNKFFVK----PKTSKISDRSFDS---DQGTAGVTRKPNKDILEHDRKRQIQLRLVILEEKLIDQGYSEVEIAQKLDEARNNLIA 294
MY +GL T RGSGTNGY+ N ++ P + +D+ + R P++ ILEH+RKR+++++++ L ++L ++G E +I ++ + R L A
Sbjct: 1 MYGNVGLATARGSGTNGYVTRNTAHLRIREGPPGGQPYGSGYDALLESVSKPPIHRAPDQGILEHERKRRVEVKVMELRDELEEKGMEEDDIEEECSKLRQKLTA 105
BLAST of rna-TanjilR_13982 vs. DB:Swiss
Match: CWC21_CRYNB (Pre-mRNA-splicing factor CWC21 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) OX=283643 GN=CWC21 PE=3 SV=1) HSP 1 Score: 62.3882 bits (150), Expect = 1.720e-9 Identity = 33/105 (31.43%), Postives = 59/105 (56.19%), Query Frame = 1 Query: 1 MYNGIGLQTPRGSGTNGYIQNNKFFVK----PKTSKISDRSFDS---DQGTAGVTRKPNKDILEHDRKRQIQLRLVILEEKLIDQGYSEVEIAQKLDEARNNLIA 294
MY +GL T RGSGTNGY+ N ++ P + +D+ + R P++ ILEH+RKR+++++++ L ++L ++G E +I ++ + R L A
Sbjct: 1 MYGNVGLATARGSGTNGYVTRNTAHLRIREGPPGGQPYGSGYDALLESVSKPPIHRAPDQGILEHERKRRVEVKVMELRDELEEKGMEEDDIEEECSKLRQKLTA 105
BLAST of rna-TanjilR_13982 vs. DB:Swiss
Match: CWC21_USTMA (Pre-mRNA-splicing factor CWC21 OS=Ustilago maydis (strain 521 / FGSC 9021) OX=237631 GN=CWC21 PE=3 SV=1) HSP 1 Score: 62.3882 bits (150), Expect = 7.892e-9 Identity = 37/99 (37.37%), Postives = 59/99 (59.60%), Query Frame = 1 Query: 1 MYNGIGLQTPRGSGTNGYIQNNKFFVKPKTSKISDRSFDSDQGTAGVTR-KPNKDILEHDRKRQIQLRLVILEEKLIDQGYSEVEIAQKLDEARNNLIA 294
MYNGIGL+T RG+GTNGY+Q N + + + R + G+ TR P+ ILEH+RKR ++++ + L +L D ++ EI +++ + R L A
Sbjct: 1 MYNGIGLKTARGTGTNGYVQRNLSNFEAGKKRWNKRDATDEVGSD--TRLGPDAAILEHERKRAVEVKCMELRVELEDDDVADDEIEERVAQLRETLNA 97
BLAST of rna-TanjilR_13982 vs. DB:Swiss
Match: CWC21_ASPFU (Pre-mRNA-splicing factor cwc21 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) OX=330879 GN=cwc21 PE=3 SV=1) HSP 1 Score: 59.3066 bits (142), Expect = 2.328e-8 Identity = 30/77 (38.96%), Postives = 48/77 (62.34%), Query Frame = 1 Query: 1 MYNGIGLQTPRGSGTNGYIQNNKFFVKPKTSKI--------SDRSFDSDQGTAGVTRKPNKDILEHDRKRQIQLRLV 207
M + +GL TPRGSGT+GY+Q N F+KP+ + + DS +G R+P+K ILEHDR+R ++++++
Sbjct: 1 MSSNVGLSTPRGSGTSGYVQRNYAFMKPRNAGYGAPYPPVSGANANDSSRGFK--QRQPDKQILEHDRRRAVEVKVM 75
BLAST of rna-TanjilR_13982 vs. DB:Swiss
Match: CWC21_DEBHA (Pre-mRNA-splicing factor CWC21 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) OX=284592 GN=CWC21 PE=3 SV=1) HSP 1 Score: 56.225 bits (134), Expect = 1.347e-7 Identity = 37/112 (33.04%), Postives = 56/112 (50.00%), Query Frame = 1 Query: 7 NGIGLQTPRGSGTNGYIQNNKFFVKPKTSKISDRS---------------FDSDQGTAGVTRKPNKDILEHDRKRQIQLRLVILEEKLIDQGYSEVEIAQKLDEARNNLIAS 297
NGIGLQT RGSGT G+IQ N K S D+S +D T + ++I HD KR ++++ + L + L D+ E+ I +K++E R+ L+ S
Sbjct: 4 NGIGLQTARGSGTTGHIQKNVASNKDHASIKDDKSGHFRRRQLSNDRKLKYDKHISTRNNRDEAKQEIRSHDLKRDVEVKCMELRDALEDESEEELTIEKKVNELRDKLLNS 115 The following BLAST results are available for this feature:
BLAST of rna-TanjilR_13982 vs. DB:Swiss
Analysis Date: 2020-01-28 (BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot) Total hits: 9 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterProScan: L. angustifolius cv. Tanjil genome v1.0
Date Performed: 2020-01-28 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >rna-TanjilR_13982_La_Tanjil_v1.0 ID=rna-TanjilR_13982_La_Tanjil_v1.0; Name=rna-TanjilR_13982; organism=Lupinus angustifolius; type=mRNA; length=3062bpback to top protein sequence of rna-TanjilR_13982_La_Tanjil_v1.0 >rna-TanjilR_13982_La_Tanjil_v1.0 ID=rna-TanjilR_13982_La_Tanjil_v1.0; Name=rna-TanjilR_13982_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=758bpback to top mRNA from alignment at Chr_LG03-CM007363.1:22780082..22783143+ Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>rna-TanjilR_13982_La_Tanjil_v1.0 ID=rna-TanjilR_13982_La_Tanjil_v1.0; Name=rna-TanjilR_13982; organism=Lupinus angustifolius; type=mRNA; length=3062bp; location=Sequence derived from: Chr_LG03-CM007363.1:22780082..22783143+ (Lupinus angustifoliusback to top Coding sequence (CDS) from alignment at Chr_LG03-CM007363.1:22780082..22783143+ >rna-TanjilR_13982_La_Tanjil_v1.0 ID=rna-TanjilR_13982_La_Tanjil_v1.0; Name=rna-TanjilR_13982; organism=Lupinus angustifolius; type=CDS; length=2277bp; location=Sequence derived from: Chr_LG03-CM007363.1:22780082..22783143+ (Lupinus angustifoliusback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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