rna-TanjilR_05421

Transcript Overview
Namerna-TanjilR_05421
Unique Namerna-TanjilR_05421_La_Tanjil_v1.0
TypemRNA
OrganismLupinus angustifolius (blue lupin)
Sequence length1101
Producthypothetical protein
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr_LG03-CM007363.1supercontigChr_LG03-CM007363.1:24894527..24895627 +Lupinus angustifolius L. Tanjil genome v1.0n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Lupinus angustifolius L. Tanjil genome v1.02019-09-17
InterProScan: L. angustifolius cv. Tanjil genome v1.02020-01-28
BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot2020-01-28
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
ananL270Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ananL294Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ananR538Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancaiR0875Cicer arietinum ICC 4958 genome v2Cicer arietinum
ancaiR0903Cicer arietinum ICC 4958 genome v2Cicer arietinum
ancaiR0904Cicer arietinum ICC 4958 genome v2Cicer arietinum
ancaR0741Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
anccR0999Cajanus cajan Asha genome v1.0Cajanus cajan
ancaR0763Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ancaR0795Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ancrR0922Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
anpsR0631Pisum sativum Cameor genome v1aPisum sativum
anpsR0636Pisum sativum Cameor genome v1aPisum sativum
anpvR0858Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
anpvR0884Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
anvuR0753Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
anvuR0762Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
anzwsR0720Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
anvfhR0713Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
antifR0724Vicia faba cv. Tiffany genome v1.0Vicia faba
anvfhR0730Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
anvrvR0701Vigna radiata cv. VC1973A genome v6.0Vigna radiata
anvrvR0735Vigna radiata cv. VC1973A genome v6.0Vigna radiata
anvuaR0736Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
anvssR0824Vicia sativa cv. Studenica genome v1.0Vicia sativa
ancanR0681Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
ancanR0701Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
anavjR0788Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
anavjR0799Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
anavjR0838Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
anavjR0849Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
ancarR0722Cicer arietinum
ancarR0732Cicer arietinum
anvumR0803Vigna umbellata FF25 genome v1.0Vigna umbellata
anccaR0746Cajanus cajan cv. Asha genome v2.0Cajanus cajan
anccaR0764Cajanus cajan cv. Asha genome v2.0Cajanus cajan
anvumR0832Vigna umbellata FF25 genome v1.0Vigna umbellata
anvumR0841Vigna umbellata FF25 genome v1.0Vigna umbellata
anvvaR0765Vicia villosa cv. AU Merit genome v1.0Vicia villosa
anvvaR0796Vicia villosa cv. AU Merit genome v1.0Vicia villosa
anvstR0810Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
anvasR0822Vigna angularis cv. Shumari genome v1.a1Vigna angularis
anvstR0834Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
anvasR0845Vigna angularis cv. Shumari genome v1.a1Vigna angularis
anvstR0842Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
anvasR0858Vigna angularis cv. Shumari genome v1.a1Vigna angularis
anvasR0870Vigna angularis cv. Shumari genome v1.a1Vigna angularis
anpvfR0874Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
anvunR0725Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
anvunR0728Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
anpvfR0901Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
anpvfR0924Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
gene-TanjilG_05421gene-TanjilG_05421_La_Tanjil_v1.0Lupinus angustifoliusgene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna-TanjilR_05421rna-TanjilR_05421_La_Tanjil_v1.0-proteinLupinus angustifoliuspolypeptide
rna-TanjilR_05421_La_Tanjil_v1.0rna-TanjilR_05421_La_Tanjil_v1.0Lupinus angustifoliuspolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
rna-TanjilR_05421_La_Tanjil_v1.0-exon-Chr_LG03-CM007363.1_La_Tanjil_v1.0-1579734366:24894527..24894977rna-TanjilR_05421_La_Tanjil_v1.0-exon-Chr_LG03-CM007363.1_La_Tanjil_v1.0-1579734366:24894527..24894977Lupinus angustifoliusexon
rna-TanjilR_05421_La_Tanjil_v1.0-exon-Chr_LG03-CM007363.1_La_Tanjil_v1.0-1579734366:24895590..24895627rna-TanjilR_05421_La_Tanjil_v1.0-exon-Chr_LG03-CM007363.1_La_Tanjil_v1.0-1579734366:24895590..24895627Lupinus angustifoliusexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
rna-TanjilR_05421_La_Tanjil_v1.0-CDS-Chr_LG03-CM007363.1_La_Tanjil_v1.0-1579734366:24894527..24894977rna-TanjilR_05421_La_Tanjil_v1.0-CDS-Chr_LG03-CM007363.1_La_Tanjil_v1.0-1579734366:24894527..24894977Lupinus angustifoliusCDS
rna-TanjilR_05421_La_Tanjil_v1.0-CDS-Chr_LG03-CM007363.1_La_Tanjil_v1.0-1579734366:24895590..24895627rna-TanjilR_05421_La_Tanjil_v1.0-CDS-Chr_LG03-CM007363.1_La_Tanjil_v1.0-1579734366:24895590..24895627Lupinus angustifoliusCDS


Homology
The following BLAST results are available for this feature:
BLAST of rna-TanjilR_05421 vs.
Analysis Date: 2020-01-28 (BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan: L. angustifolius cv. Tanjil genome v1.0
Date Performed: 2020-01-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 32..56
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 17..56
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 103..146
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 103..131

Sequences
The following sequences are available for this feature:

mRNA sequence

>rna-TanjilR_05421_La_Tanjil_v1.0 ID=rna-TanjilR_05421_La_Tanjil_v1.0; Name=rna-TanjilR_05421; organism=Lupinus angustifolius; type=mRNA; length=1101bp
ATGGTAACCAATGGTGTCGGAACAAGCTCGGCGGTTATACAAAATCAATC
TTCTTCCTACCCCGAGTTTGAGAAACGGCCAGCTGTTCCTCCAACTATTG
TCTCAGACACGACGACTCCTACCTCTATGGTATCAGGTCAGAAGAGTGGA
AGGACATTCACTTCCTCTCACGGGCTCGAAAGAGATAATGTTCTTCTTAG
AAGTAAGGAGAAGATCATATCCGTTGTTACTGAAGGAGAGGGGGGAAATA
ATACACAAGTGCAACAGTGTTGTAGTGTATCCGCTACAAGAAGAATGTCA
ATGCCTCGTGAAAGTCGAGCTACATGGAATTCATCACACCAACCGATTAG
GACCCTAGAAGGTGATGCATCTTCTTTTGACTTGAAACAGAAAAATCCAA
CACCAGAACACATGCCAAGGAGTGAAAGACTTTCGTCTGGATCAACAATG
AGTAATATGCAAATAAAAAGAGTATCACCCTCTATGAGTGGCACTAGAGA
TTTTGTTGCTTTTAATAGAAACCTAAGTGGTCGGACAAGGGTGAAAATCA
ATGTGGAGGAAACCAGGTTTAGAGTTCATCATTCACCAATAGGGACTAAT
ATGGCCCTTAGGGAAATCTTGAGGAACTAAAATGAATGTTTTTTCTTGGA
GCTGATGAGGGGGAAGAAGATGACACAAACGACATCAATCATTTcgtgtc
ttattttttaaaaatcgaAACAATGTTTTGTTGAGTTGGCAAAATTTTCT
AACATAGAATCGCCACGTGTGGTAATGTATGCAGTTAACATGTCACATCA
GCAATTTTGTTAAGGTTAACAAATATGGATAACAAGGGACTAACATGTGT
CTACGTTTTAAAAGTTTGggactaaaataataatttaaatttattagaga
CTAAATTAGTACCATGGAAAATATGATAGATACGAGTAACTACTCTTATT
ATTATGAACATTATGAGATGTTATATAGAGAATTGGTATCATCTACCTGG
ATTCTGCTAGGATTAAACTATTTCCTTCTTAGGCTTTAACTTTTTGTATC
CCATATTTCAAAGGTTTATGGCTACTAGCTAGCTTAATTTCGTGTGATTA
G
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protein sequence of rna-TanjilR_05421_La_Tanjil_v1.0

>rna-TanjilR_05421_La_Tanjil_v1.0 ID=rna-TanjilR_05421_La_Tanjil_v1.0; Name=rna-TanjilR_05421_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=162bp
MVTNGVGTSSAVIQNQSSSYPEFEKRPAVPPTIVSDTTTPTSMVSGQKSG
RTFTSSHGLERDNVLLRSKEKIISVVTEGEGGNNTQVQQCCSVSATRRMS
MPRESRATWNSSHQPIRTLEGDASSFDLKQKNPTPEHMPRSERLSSGSTM
SLWLLASLISCD
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mRNA from alignment at Chr_LG03-CM007363.1:24894527..24895627+

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna-TanjilR_05421_La_Tanjil_v1.0 ID=rna-TanjilR_05421_La_Tanjil_v1.0; Name=rna-TanjilR_05421; organism=Lupinus angustifolius; type=mRNA; length=1101bp; location=Sequence derived from: Chr_LG03-CM007363.1:24894527..24895627+ (Lupinus angustifolius
ATGGTAACCAATGGTGTCGGAACAAGCTCGGCGGTTATACAAAATCAATC
TTCTTCCTACCCCGAGTTTGAGAAACGGCCAGCTGTTCCTCCAACTATTG
TCTCAGACACGACGACTCCTACCTCTATGGTATCAGGTCAGAAGAGTGGA
AGGACATTCACTTCCTCTCACGGGCTCGAAAGAGATAATGTTCTTCTTAG
AAGTAAGGAGAAGATCATATCCGTTGTTACTGAAGGAGAGGGGGGAAATA
ATACACAAGTGCAACAGTGTTGTAGTGTATCCGCTACAAGAAGAATGTCA
ATGCCTCGTGAAAGTCGAGCTACATGGAATTCATCACACCAACCGATTAG
GACCCTAGAAGGTGATGCATCTTCTTTTGACTTGAAACAGAAAAATCCAA
CACCAGAACACATGCCAAGGAGTGAAAGACTTTCGTCTGGATCAACAATG
AGTAATATGCAAATAAAAAGAGTATCACCCTCTATGAGTGGCACTAGAGA
TTTTGTTGCTTTTAATAGAAACCTAAGTGGTCGGACAAGGGTGAAAATCA
ATGTGGAGGAAACCAGGTTTAGAGTTCATCATTCACCAATAGGGACTAAT
ATGGCCCTTAGGGAAATCTTGAGGAACTAAAATGAATGTTTTTTCTTGGA
GCTGATGAGGGGGAAGAAGATGACACAAACGACATCAATCATTTcgtgtc
ttattttttaaaaatcgaAACAATGTTTTGTTGAGTTGGCAAAATTTTCT
AACATAGAATCGCCACGTGTGGTAATGTATGCAGTTAACATGTCACATCA
GCAATTTTGTTAAGGTTAACAAATATGGATAACAAGGGACTAACATGTGT
CTACGTTTTAAAAGTTTGggactaaaataataatttaaatttattagaga
CTAAATTAGTACCATGGAAAATATGATAGATACGAGTAACTACTCTTATT
ATTATGAACATTATGAGATGTTATATAGAGAATTGGTATCATCTACCTGG
ATTCTGCTAGGATTAAACTATTTCCTTCTTAGGCTTTAACTTTTTGTATC
CCATATTTCAAAGGTTTATGGCTACTAGCTAGCTTAATTTCGTGTGATTA
G
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Coding sequence (CDS) from alignment at Chr_LG03-CM007363.1:24894527..24895627+

>rna-TanjilR_05421_La_Tanjil_v1.0 ID=rna-TanjilR_05421_La_Tanjil_v1.0; Name=rna-TanjilR_05421; organism=Lupinus angustifolius; type=CDS; length=489bp; location=Sequence derived from: Chr_LG03-CM007363.1:24894527..24895627+ (Lupinus angustifolius
ATGGTAACCAATGGTGTCGGAACAAGCTCGGCGGTTATACAAAATCAATC
TTCTTCCTACCCCGAGTTTGAGAAACGGCCAGCTGTTCCTCCAACTATTG
TCTCAGACACGACGACTCCTACCTCTATGGTATCAGGTCAGAAGAGTGGA
AGGACATTCACTTCCTCTCACGGGCTCGAAAGAGATAATGTTCTTCTTAG
AAGTAAGGAGAAGATCATATCCGTTGTTACTGAAGGAGAGGGGGGAAATA
ATACACAAGTGCAACAGTGTTGTAGTGTATCCGCTACAAGAAGAATGTCA
ATGCCTCGTGAAAGTCGAGCTACATGGAATTCATCACACCAACCGATTAG
GACCCTAGAAGGTGATGCATCTTCTTTTGACTTGAAACAGAAAAATCCAA
CACCAGAACACATGCCAAGGAGTGAAAGACTTTCGTCTGGATCAACAATG
AGTTTATGGCTACTAGCTAGCTTAATTTCGTGTGATTAG
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