rna-TanjilR_05365

Transcript Overview
Namerna-TanjilR_05365
Unique Namerna-TanjilR_05365_La_Tanjil_v1.0
TypemRNA
OrganismLupinus angustifolius (blue lupin)
Sequence length502
Producthypothetical protein
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr_LG03-CM007363.1supercontigChr_LG03-CM007363.1:25250759..25251260 +Lupinus angustifolius L. Tanjil genome v1.0n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Lupinus angustifolius L. Tanjil genome v1.02019-09-17
InterProScan: L. angustifolius cv. Tanjil genome v1.02020-01-28
BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot2020-01-28
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
ananL233Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ananR540Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ananR541Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancaiR0899Cicer arietinum ICC 4958 genome v2Cicer arietinum
anccR0997Cajanus cajan Asha genome v1.0Cajanus cajan
ancaR0763Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ancaR0776Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
anpsR0631Pisum sativum Cameor genome v1aPisum sativum
anpvR0844Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
anpvR0903Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
anvuR0713Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
anvuR0762Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
anasR0814Vigna angularis Jingnong 6 genome v1.1Vigna angularis
anasR0849Vigna angularis Jingnong 6 genome v1.1Vigna angularis
anzwsR0720Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
anzwsR0753Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
anvuaR0684Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
anvuaR0736Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
anvssR0858Vicia sativa cv. Studenica genome v1.0Vicia sativa
anvssR0883Vicia sativa cv. Studenica genome v1.0Vicia sativa
ancarR0732Cicer arietinum
ancarR0754Cicer arietinum
anvumR0832Vigna umbellata FF25 genome v1.0Vigna umbellata
anvumR0860Vigna umbellata FF25 genome v1.0Vigna umbellata
anvvaR0767Vicia villosa cv. AU Merit genome v1.0Vicia villosa
anvasR0834Vigna angularis cv. Shumari genome v1.a1Vigna angularis
anvasR0880Vigna angularis cv. Shumari genome v1.a1Vigna angularis
anvunR0681Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
anvunR0728Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata

Orthologs
Gene/TranscriptAssemblySpecies
jg13348.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Ca_14459.1Cicer arietinum ICC 4958 genome v2Cicer arietinum
Ca_04761Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
Vigan.02G009600.01Vigna angularis cv. Shumari genome v1.a1Vigna angularis
Phvul.009G004900.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
LR48_mrnaVigan04g250900Vigna angularis Jingnong 6 genome v1.1Vigna angularis
Psat05G0014500-T1Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
Vigun09g268100.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
Vum_02G00105.1Vigna umbellata FF25 genome v1.0Vigna umbellata
evm.model.Chr09.1104Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
rna-KK1_019525Cajanus cajan Asha genome v1.0Cajanus cajan
Psat5g005320.1Pisum sativum Cameor genome v1aPisum sativum
XM_058927004.1Vicia villosa cv. AU Merit genome v1.0Vicia villosa
Vigun09g268100.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
gene-TanjilG_05365gene-TanjilG_05365_La_Tanjil_v1.0Lupinus angustifoliusgene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna-TanjilR_05365rna-TanjilR_05365_La_Tanjil_v1.0-proteinLupinus angustifoliuspolypeptide
rna-TanjilR_05365_La_Tanjil_v1.0rna-TanjilR_05365_La_Tanjil_v1.0Lupinus angustifoliuspolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
rna-TanjilR_05365_La_Tanjil_v1.0-exon-Chr_LG03-CM007363.1_La_Tanjil_v1.0-1579734366:25250759..25250823rna-TanjilR_05365_La_Tanjil_v1.0-exon-Chr_LG03-CM007363.1_La_Tanjil_v1.0-1579734366:25250759..25250823Lupinus angustifoliusexon
rna-TanjilR_05365_La_Tanjil_v1.0-exon-Chr_LG03-CM007363.1_La_Tanjil_v1.0-1579734366:25251044..25251260rna-TanjilR_05365_La_Tanjil_v1.0-exon-Chr_LG03-CM007363.1_La_Tanjil_v1.0-1579734366:25251044..25251260Lupinus angustifoliusexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
rna-TanjilR_05365_La_Tanjil_v1.0-CDS-Chr_LG03-CM007363.1_La_Tanjil_v1.0-1579734366:25250759..25250823rna-TanjilR_05365_La_Tanjil_v1.0-CDS-Chr_LG03-CM007363.1_La_Tanjil_v1.0-1579734366:25250759..25250823Lupinus angustifoliusCDS
rna-TanjilR_05365_La_Tanjil_v1.0-CDS-Chr_LG03-CM007363.1_La_Tanjil_v1.0-1579734366:25251044..25251260rna-TanjilR_05365_La_Tanjil_v1.0-CDS-Chr_LG03-CM007363.1_La_Tanjil_v1.0-1579734366:25251044..25251260Lupinus angustifoliusCDS


Homology
The following BLAST results are available for this feature:
BLAST of rna-TanjilR_05365 vs.
Analysis Date: 2020-01-28 (BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan: L. angustifolius cv. Tanjil genome v1.0
Date Performed: 2020-01-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 53..73

Sequences
The following sequences are available for this feature:

mRNA sequence

>rna-TanjilR_05365_La_Tanjil_v1.0 ID=rna-TanjilR_05365_La_Tanjil_v1.0; Name=rna-TanjilR_05365; organism=Lupinus angustifolius; type=mRNA; length=502bp
atggaacaagaaaTAGACGAACTCATATTCAACATGGATTCACTTGGAAC
CACTTTTCCACAAAAGTAAGATCATTCagttactattattataaaaacaa
aagaaaaaaccagttttatatgcatcatttatattcatatatgtgTTTGT
GAGTTATATTTATTGaccatattatatatttatatgtaggCAAAACAACT
AATATTCATcttcaaagttattttttatttttcataaaagtGAGGTTAAT
AAAAAGAAGCAACTTTATCTGTAATGTGTGAGCAGGAGAGGATTATCAAG
GTATTATGCAGGTAAATCAAGATCATTTGCATGCATAGCTGAAGTGGAGG
TTCAATCAGTGGAGTATTTGAAGAAACCAGAACataataagaaaaggaag
aaacatTCTCATGTGAAGGAAATTCTAAaccctcctcctccttatccatG
TCGTGGTGCAACAAATTGTACCCAATTCACTACACCTTATGTAAATGCTT
AG
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protein sequence of rna-TanjilR_05365_La_Tanjil_v1.0

>rna-TanjilR_05365_La_Tanjil_v1.0 ID=rna-TanjilR_05365_La_Tanjil_v1.0; Name=rna-TanjilR_05365_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=93bp
MEQEIDELIFNMDSLGTTFPQKRGLSRYYAGKSRSFACIAEVEVQSVEYL
KKPEHNKKRKKHSHVKEILNPPPPYPCRGATNCTQFTTPYVNA
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mRNA from alignment at Chr_LG03-CM007363.1:25250759..25251260+

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna-TanjilR_05365_La_Tanjil_v1.0 ID=rna-TanjilR_05365_La_Tanjil_v1.0; Name=rna-TanjilR_05365; organism=Lupinus angustifolius; type=mRNA; length=502bp; location=Sequence derived from: Chr_LG03-CM007363.1:25250759..25251260+ (Lupinus angustifolius
atggaacaagaaaTAGACGAACTCATATTCAACATGGATTCACTTGGAAC
CACTTTTCCACAAAAGTAAGATCATTCagttactattattataaaaacaa
aagaaaaaaccagttttatatgcatcatttatattcatatatgtgTTTGT
GAGTTATATTTATTGaccatattatatatttatatgtaggCAAAACAACT
AATATTCATcttcaaagttattttttatttttcataaaagtGAGGTTAAT
AAAAAGAAGCAACTTTATCTGTAATGTGTGAGCAGGAGAGGATTATCAAG
GTATTATGCAGGTAAATCAAGATCATTTGCATGCATAGCTGAAGTGGAGG
TTCAATCAGTGGAGTATTTGAAGAAACCAGAACataataagaaaaggaag
aaacatTCTCATGTGAAGGAAATTCTAAaccctcctcctccttatccatG
TCGTGGTGCAACAAATTGTACCCAATTCACTACACCTTATGTAAATGCTT
AG
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Coding sequence (CDS) from alignment at Chr_LG03-CM007363.1:25250759..25251260+

>rna-TanjilR_05365_La_Tanjil_v1.0 ID=rna-TanjilR_05365_La_Tanjil_v1.0; Name=rna-TanjilR_05365; organism=Lupinus angustifolius; type=CDS; length=282bp; location=Sequence derived from: Chr_LG03-CM007363.1:25250759..25251260+ (Lupinus angustifolius
atggaacaagaaaTAGACGAACTCATATTCAACATGGATTCACTTGGAAC
CACTTTTCCACAAAAGAGAGGATTATCAAGGTATTATGCAGGTAAATCAA
GATCATTTGCATGCATAGCTGAAGTGGAGGTTCAATCAGTGGAGTATTTG
AAGAAACCAGAACataataagaaaaggaagaaacatTCTCATGTGAAGGA
AATTCTAAaccctcctcctccttatccatGTCGTGGTGCAACAAATTGTA
CCCAATTCACTACACCTTATGTAAATGCTTAG
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