LR48_mrnaVigan07g131900
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks
Orthologs
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following start_codon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
Homology
BLAST of LR48_mrnaVigan07g131900 vs. DB:Swiss
Match: AHL17_ARATH (AT-hook motif nuclear-localized protein 17 OS=Arabidopsis thaliana OX=3702 GN=AHL17 PE=2 SV=1) HSP 1 Score: 206.453 bits (524), Expect = 8.454e-65 Identity = 144/230 (62.61%), Postives = 178/230 (77.39%), Query Frame = 1 Query: 124 TGDGATIEVVXXXXXXXXXXXXXXXXXLIITREPDPSMSPFILEIPGGNDVVDALARFSHRKNTSLCVLNGSGTVGNVTLRQPSVAPVG-TVTFHGRFDILSMSATFLLHATLPSASPST---FAVSLAGPQGQIXXXXXXXXXXXXXTVFIVAASFNNPSFHRLSSEDDAQNSSASGGGVGDAQSPPASTGGAESGQLP---AESC---MYSCHL-PSDVIWAPTARPP 780 T D ++IEVVRRPRGRPPGSKNKPKPP+ +TR+ DP MSP+ILE+P GNDVV+A+ RF RK+ +CVL+GSG+V NVTLRQPS A +G T+TFHG+FD+LS+SATFL S SP F VSLAGPQGQI+GG VAG L++AGTV+++AASFNNPS+HRL +E++ ++S +G G + QSPP S GG ESGQ+ ESC MYSCH+ SDVIWAPTAR P Sbjct: 46 TVDDSSIEVVRRPRGRPPGSKNKPKPPVFVTRDTDPPMSPYILEVPSGNDVVEAINRFCRRKSIGVCVLSGSGSVANVTLRQPSPAALGSTITFHGKFDLLSVSATFLPPPPRTSLSPPVSNFFTVSLAGPQGQIIGGFVAGPLISAGTVYVIAASFNNPSYHRLPAEEEQKHS--AGTGEREGQSPPVSGGGEESGQMAGSGGESCGVSMYSCHMGGSDVIWAPTARAP 273
BLAST of LR48_mrnaVigan07g131900 vs. DB:Swiss
Match: AHL28_ARATH (AT-hook motif nuclear-localized protein 28 OS=Arabidopsis thaliana OX=3702 GN=AHL28 PE=2 SV=1) HSP 1 Score: 157.532 bits (397), Expect = 1.808e-46 Identity = 105/189 (55.56%), Postives = 127/189 (67.20%), Query Frame = 1 Query: 226 DPSMSPFILEIPGGNDVVDALARFSHRKNTSLCVLNGSGTVGNVTLRQPS-VAPVGTVTFHGRFDILSMSATFLLHATLPSASPST---FAVSLAGPQGQIXXXXXXXXXXXXXTVFIVAASFNNPSFHRLSSEDDAQNSSASGGGVGDAQSPPASTGGAESGQLPAESCMYSCHLPSDVIWAPTARPP 780 DP MSP+ILE+P GNDVV+AL RF K CVL+GSG+V +VTLRQPS AP T+TFHG+FD+LS+SATFL S SP F VSLAGPQG+++GG VAG L+AAGTV+ VA SF NPS+HRL + ++ Q +SA G + QSPP S GG ES MY SDVIW P A+ P Sbjct: 27 DPPMSPYILEVPSGNDVVEALNRFCRGKAIGFCVLSGSGSVADVTLRQPSPAAPGSTITFHGKFDLLSVSATFLPPLPPTSLSPPVSNFFTVSLAGPQGKVIGGFVAGPLVAAGTVYFVATSFKNPSYHRLPATEEEQRNSAE--GEEEGQSPPVSGGGGES--------MYVGG--SDVIWDPNAKAP 203
BLAST of LR48_mrnaVigan07g131900 vs. DB:Swiss
Match: AHL22_ARATH (AT-hook motif nuclear-localized protein 22 OS=Arabidopsis thaliana OX=3702 GN=AHL22 PE=1 SV=1) HSP 1 Score: 91.2781 bits (225), Expect = 2.969e-20 Identity = 78/216 (36.11%), Postives = 114/216 (52.78%), Query Frame = 1 Query: 205 LIITREPDPSMSPFILEIPGGNDVVDALARFSHRKNTSLCVLNGSGTVGNVTLRQPSVAPVG---TVTFHGRFDILSMSATFLLHATLPSASPSTFAVSLAGPQGQIXXXXXXXXXXXXXTVFIVAASFNNPSFHRLSSEDDAQNSSASGGGVGDAQSPPASTGGAESG-------------QLPAE-------SCMYSCHLPSDVIWAPTARPPF 783 +IITR+ ++ ++E+ G DV++++ F+ R+ +CVL+G+G V NVT+RQP+ P G V HGRF+ILS+S +FL + S + LAG QGQ+VGG V G L+A+G V I+AASF N ++ RL E+D Q + G V + A+ GG Q P + M S LP++ W T RP F Sbjct: 106 IIITRDSANALKSHVMEVANGCDVMESVTVFARRRQRGICVLSGNGAVTNVTIRQPASVPGGGSSVVNLHGRFEILSLSGSFLPPPA--PPAASGLTIYLAGGQGQVVGGSVVGPLMASGPVVIMAASFGNAAYERLPLEEDDQEEQ-TAGAVANNIDGNATMGGGTQTQTQTQQQQQQQLMQDPTSFIQGLPPNLMNSVQLPAEAYWG-TPRPSF 317
BLAST of LR48_mrnaVigan07g131900 vs. DB:Swiss
Match: AHL26_ARATH (AT-hook motif nuclear-localized protein 26 OS=Arabidopsis thaliana OX=3702 GN=AHL26 PE=2 SV=1) HSP 1 Score: 91.6633 bits (226), Expect = 3.031e-20 Identity = 61/139 (43.88%), Postives = 92/139 (66.19%), Query Frame = 1 Query: 205 LIITREPDPSMSPFILEIPGGNDVVDALARFSHRKNTSLCVLNGSGTVGNVTLRQPSVAPVGTVTFHGRFDILSMSATFLLHATLPSASPSTFAVSLAGPQGQIXXXXXXXXXXXXXTVFIVAASFNNPSFHRLSSEDD 621 +IITR+ ++ ++EI G D+VD +A F+ R+ +CV++G+G+V NVT+RQP P V+ HGRF+ILS+S +FL + + +V LAG QGQ+VGG V G LL +G V ++AASF+N ++ RL E+D Sbjct: 135 IIITRDSANALRTHVMEIGDGCDIVDCMATFARRRQRGVCVMSGTGSVTNVTIRQPGSPPGSVVSLHGRFEILSLSGSFLPPPA--PPAATGLSVYLAGGQGQVVGGSVVGPLLCSGPVVVMAASFSNAAYERLPLEED 271
BLAST of LR48_mrnaVigan07g131900 vs. DB:Swiss
Match: AHL18_ARATH (AT-hook motif nuclear-localized protein 18 OS=Arabidopsis thaliana OX=3702 GN=AHL18 PE=2 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 6.656e-20 Identity = 56/131 (42.75%), Postives = 81/131 (61.83%), Query Frame = 1 Query: 205 LIITREPDPSMSPFILEIPGGNDVVDALARFSHRKNTSLCVLNGSGTVGNVTLRQPSVAPVGTVTFHGRFDILSMSATFLLHATLPSASPSTFAVSLAGPQGQIXXXXXXXXXXXXXTVFIVAASFNNPSF 597 +I+TR+ + ++EI DV+++LA F+ R+ +CVL G+G V NVT+RQP G V+ HGRF+ILS+S +FL + S V LAG QGQ++GG V G L A+ V ++AASF N S+ Sbjct: 76 IIVTRDSANAFRCHVMEITNACDVMESLAVFARRRQRGVCVLTGNGAVTNVTVRQPG---GGVVSLHGRFEILSLSGSFL--PPPAPPAASGLKVYLAGGQGQVIGGSVVGPLTASSPVVVMAASFGNASY 201
BLAST of LR48_mrnaVigan07g131900 vs. DB:Swiss
Match: AHL20_ARATH (AT-hook motif nuclear-localized protein 20 OS=Arabidopsis thaliana OX=3702 GN=AHL20 PE=2 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 8.620e-20 Identity = 73/162 (45.06%), Postives = 101/162 (62.35%), Query Frame = 1 Query: 205 LIITREPDPSMSPFILEIPGGNDVVDALARFSHRKNTSLCVLNGSGTVGNVTLRQPSVAPVGTVTFHGRFDILSMSATFLLHATLPSASP---STFAVSLAGPQGQIXXXXXXXXXXXXXTVFIVAASFNNPSFHRL--SSEDDAQNSSASGGGVGDAQSPP 675 + +TR+ ++ +LEI G+DV D +A FS R+ +CVL+G+G+V NVTLRQ + AP G V+ GRF+ILS++ F LP SP + V LAG QGQ+VGG V G LLA G+V ++AA+F+N ++ RL E+D S GG GD SPP Sbjct: 84 IFVTRDSPNALRSHVLEISDGSDVADTIAHFSRRRQRGVCVLSGTGSVANVTLRQ-AAAPGGVVSLQGRFEILSLTGAF-----LPGPSPPGSTGLTVYLAGVQGQVVGGSVVGPLLAIGSVMVIAATFSNATYERLPMEEEEDGGGSRQIHGG-GD--SPP 236
BLAST of LR48_mrnaVigan07g131900 vs. DB:Swiss
Match: AHL23_ARATH (AT-hook motif nuclear-localized protein 23 OS=Arabidopsis thaliana OX=3702 GN=AHL23 PE=1 SV=1) HSP 1 Score: 87.8113 bits (216), Expect = 4.245e-19 Identity = 66/139 (47.48%), Postives = 90/139 (64.75%), Query Frame = 1 Query: 205 LIITREPDPSMSPFILEIPGGNDVVDALARFSHRKNTSLCVLNGSGTVGNVTLRQPSVAPVGTVTFHGRFDILSMSATFLLHATLPSASPSTFAVSLAGPQGQIXXXXXXXXXXXXXTVFIVAASFNNPSFHRLSSEDD 621 +IITRE ++ ILE+ G DV D +A ++ R+ +CVL+GSGTV NV++RQPS A VT G F+ILS+S +FL P A ++ + LAG QGQ+VGG V G L AAG V ++AASF N ++ RL E+D Sbjct: 99 VIITRESANTLRAHILEVTNGCDVFDCVATYARRRQRGICVLSGSGTVTNVSIRQPSAAG-AVVTLQGTFEILSLSGSFLPPPAPPGA--TSLTIFLAGGQGQVVGGSVVGELTAAGPVIVIAASFTNVAYERLPLEED 234
BLAST of LR48_mrnaVigan07g131900 vs. DB:Swiss
Match: AHL29_ARATH (AT-hook motif nuclear-localized protein 29 OS=Arabidopsis thaliana OX=3702 GN=AHL29 PE=1 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 3.363e-18 Identity = 53/146 (36.30%), Postives = 87/146 (59.59%), Query Frame = 1 Query: 205 LIITREPDPSMSPFILEIPGGNDVVDALARFSHRKNTSLCVLNGSGTVGNVTLRQPSVAPV--------GTVTFHGRFDILSMSATFLLHATLPSASPSTFAVSLAGPQGQIXXXXXXXXXXXXXTVFIVAASFNNPSFHRLSSED 618 +I+TR+ + +LE+ G D+V+++ ++ R+ + +L+G+GTV NV+LRQP+ G V HGRF+ILS++ T L ++ L+G QGQ++GG+V L+A+G V ++AASF+N +F RL ED Sbjct: 89 VIVTRDSPNVLRSHVLEVSSGADIVESVTTYARRRGRGVSILSGNGTVANVSLRQPATTAAHGANGGTGGVVALHGRFEILSLTGTVLPPPA--PPGSGGLSIFLSGVQGQVIGGNVVAPLVASGPVILMAASFSNATFERLPLED 232
BLAST of LR48_mrnaVigan07g131900 vs. DB:Swiss
Match: AHL21_ARATH (AT-hook motif nuclear-localized protein 21 OS=Arabidopsis thaliana OX=3702 GN=AHL21 PE=2 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 2.154e-17 Identity = 65/164 (39.63%), Postives = 100/164 (60.98%), Query Frame = 1 Query: 205 LIITREPDPSMSPFILEIPGGNDVVDALARFSHRKNTSLCVLNGSGTVGNVTLRQPSVAPVGTVTFHGRFDILSMSATFLLHATLPSASPSTFAVSLAGPQGQIXXXXXXXXXXXXXTVFIVAASFNNPSFHRLSSEDDAQN-------------SSASGGGVG 657 +I+TRE ++ ILE+ G DV + ++ ++ R+ +CVL+G+GTV NV++RQP+ A VT G F+ILS+S +FL P A ++ + LAG QGQ+VGG+V G L+AAG V ++AASF N ++ RL ++ ++ S A+GGG G Sbjct: 95 VIVTRESANTLRAHILEVGSGCDVFECISTYARRRQRGICVLSGTGTVTNVSIRQPTAAGA-VVTLRGTFEILSLSGSFLPPPAPPGA--TSLTIFLAGAQGQVVGGNVVGELMAAGPVMVMAASFTNVAYERLPLDEHEEHLQSGGGGGGGNMYSEATGGGGG 255
BLAST of LR48_mrnaVigan07g131900 vs. DB:Swiss
Match: AHL24_ARATH (AT-hook motif nuclear-localized protein 24 OS=Arabidopsis thaliana OX=3702 GN=AHL24 PE=2 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 2.345e-17 Identity = 61/141 (43.26%), Postives = 93/141 (65.96%), Query Frame = 1 Query: 205 LIITREPDPSMSPFILEIPGGNDVVDALARFSHRKNTSLCVLNGSGTVGNVTLRQPSV--APVGTVTFHGRFDILSMSATFLLHATLPSASPSTFAVSLAGPQGQIXXXXXXXXXXXXXTVFIVAASFNNPSFHRLSSEDD 621 +IITR+ ++ ++EI G D+V+++A F+ R+ +CV++G+G V NVT+RQP +P V+ HGRF+ILS+S +FL + + +V LAG QGQ+VGG V G LL AG V ++AASF+N ++ RL E+D Sbjct: 122 IIITRDSANALRTHVMEIGDGCDLVESVATFARRRQRGVCVMSGTGNVTNVTIRQPGSHPSPGSVVSLHGRFEILSLSGSFLPPPA--PPTATGLSVYLAGGQGQVVGGSVVGPLLCAGPVVVMAASFSNAAYERLPLEED 260 The following BLAST results are available for this feature:
BLAST of LR48_mrnaVigan07g131900 vs. DB:Swiss
Analysis Date: 2020-05-21 (BLAST: V. angularis Jingnong 6 genome v1.1) Total hits: 10
InterPro
Analysis Name: InterProScan: Vigna angularis Jingnong 6 genome v1.1
Date Performed: 2020-05-21
Sequences
The
following sequences are available for this feature:
mRNA sequence >LR48_mrnaVigan07g131900_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan07g131900_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan07g131900; organism=Vigna angularis; type=mRNA; length=786bpback to top protein sequence of LR48_mrnaVigan07g131900_Va_Jingnong6_v1.1 >LR48_mrnaVigan07g131900_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan07g131900_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan07g131900_Va_Jingnong6_v1.1; organism=Vigna angularis; type=polypeptide; length=261bpback to top mRNA from alignment at Chr_7-CM003377.1:15887683..15888468- Legend: polypeptideCDSexonstart_codonstop_codon Hold the cursor over a type above to highlight its positions in the sequence below.>LR48_mrnaVigan07g131900_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan07g131900_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan07g131900; organism=Vigna angularis; type=mRNA; length=786bp; location=Sequence derived from: Chr_7-CM003377.1:15887683..15888468- (Vigna angularisback to top Coding sequence (CDS) from alignment at Chr_7-CM003377.1:15887683..15888468- >LR48_mrnaVigan07g131900_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan07g131900_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan07g131900; organism=Vigna angularis; type=CDS; length=786bp; location=Sequence derived from: Chr_7-CM003377.1:15887683..15888468- (Vigna angularisback to top |