LR48_mrnaVigan09g022300

Transcript Overview
NameLR48_mrnaVigan09g022300
Unique NameLR48_mrnaVigan09g022300_Va_Jingnong6_v1.1
TypemRNA
OrganismVigna angularis (Adzuki bean, red mung bean, azuki)
Sequence length291
Producthypothetical protein
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr_9-CM003379.1supercontigChr_9-CM003379.1:2766915..2767205 -Vigna angularis Jingnong 6 genome v1.1n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Vigna angularis Jingnong 6 genome v1.12020-05-19
InterProScan: Vigna angularis Jingnong 6 genome v1.12020-05-21
BLAST: V. angularis Jingnong 6 genome v1.12020-05-21
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
gene-LR48_Vigan09g022300gene-LR48_Vigan09g022300_Va_Jingnong6_v1.1Vigna angularisgene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
LR48_mrnaVigan09g022300LR48_mrnaVigan09g022300_Va_Jingnong6_v1.1-proteinVigna angularispolypeptide
LR48_mrnaVigan09g022300_Va_Jingnong6_v1.1LR48_mrnaVigan09g022300_Va_Jingnong6_v1.1Vigna angularispolypeptide


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
LR48_mrnaVigan09g022300_Va_Jingnong6_v1.1-start_codon-Chr_9-CM003379.1_Va_Jingnong6_v1.1-1589992784:2767203..2767205LR48_mrnaVigan09g022300_Va_Jingnong6_v1.1-start_codon-Chr_9-CM003379.1_Va_Jingnong6_v1.1-1589992784:2767203..2767205Vigna angularisstart_codon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
LR48_mrnaVigan09g022300_Va_Jingnong6_v1.1-CDS-Chr_9-CM003379.1_Va_Jingnong6_v1.1-1589992784:2766915..2767205LR48_mrnaVigan09g022300_Va_Jingnong6_v1.1-CDS-Chr_9-CM003379.1_Va_Jingnong6_v1.1-1589992784:2766915..2767205Vigna angularisCDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
LR48_mrnaVigan09g022300_Va_Jingnong6_v1.1-exon-Chr_9-CM003379.1_Va_Jingnong6_v1.1-1589992784:2766915..2767205LR48_mrnaVigan09g022300_Va_Jingnong6_v1.1-exon-Chr_9-CM003379.1_Va_Jingnong6_v1.1-1589992784:2766915..2767205Vigna angularisexon


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
LR48_mrnaVigan09g022300_Va_Jingnong6_v1.1-stop_codon-Chr_9-CM003379.1_Va_Jingnong6_v1.1-1589992784:2766915..2766917LR48_mrnaVigan09g022300_Va_Jingnong6_v1.1-stop_codon-Chr_9-CM003379.1_Va_Jingnong6_v1.1-1589992784:2766915..2766917Vigna angularisstop_codon


Homology
The following BLAST results are available for this feature:
BLAST of LR48_mrnaVigan09g022300 vs.
Analysis Date: 2020-05-21 (BLAST: V. angularis Jingnong 6 genome v1.1)
Total hits: 0
Match NameE-valueIdentityDescription
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Sequences
The following sequences are available for this feature:

mRNA sequence

>LR48_mrnaVigan09g022300_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan09g022300_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan09g022300; organism=Vigna angularis; type=mRNA; length=291bp
ATGAGTAACTTTCGAGTGTGGTTTGTGTTTCTTTTGGCTTTGTCGCTCTC
CAATTCATGTGCTCTTGTCTACTCTCACCATGCTGCATACAAGCCTGACT
GCTACCACCCCACACCTCCAAACCATAGGCATCGTAAAACTCTACCACCG
CCACCGTTGTGGTTGTCGCCGCCGCCACCGGCCGCGTTTTATTTCTTTTC
TCCACCACCTCCTAGTCCTCCTTATTTTCATCGAAGGCATGTGGGACAGG
ACACAAAACACGTGGCCCCACCAAGGCTTCGGGTGCTTTGA
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protein sequence of LR48_mrnaVigan09g022300_Va_Jingnong6_v1.1

>LR48_mrnaVigan09g022300_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan09g022300_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan09g022300_Va_Jingnong6_v1.1; organism=Vigna angularis; type=polypeptide; length=96bp
MSNFRVWFVFLLALSLSNSCALVYSHHAAYKPDCYHPTPPNHRHRKTLPP
PPLWLSPPPPAAFYFFSPPPPSPPYFHRRHVGQDTKHVAPPRLRVL
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mRNA from alignment at Chr_9-CM003379.1:2766915..2767205-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>LR48_mrnaVigan09g022300_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan09g022300_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan09g022300; organism=Vigna angularis; type=mRNA; length=291bp; location=Sequence derived from: Chr_9-CM003379.1:2766915..2767205- (Vigna angularis
ATGAGTAACTTTCGAGTGTGGTTTGTGTTTCTTTTGGCTTTGTCGCTCTC
CAATTCATGTGCTCTTGTCTACTCTCACCATGCTGCATACAAGCCTGACT
GCTACCACCCCACACCTCCAAACCATAGGCATCGTAAAACTCTACCACCG
CCACCGTTGTGGTTGTCGCCGCCGCCACCGGCCGCGTTTTATTTCTTTTC
TCCACCACCTCCTAGTCCTCCTTATTTTCATCGAAGGCATGTGGGACAGG
ACACAAAACACGTGGCCCCACCAAGGCTTCGGGTGCTTTGA
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Coding sequence (CDS) from alignment at Chr_9-CM003379.1:2766915..2767205-

>LR48_mrnaVigan09g022300_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan09g022300_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan09g022300; organism=Vigna angularis; type=CDS; length=291bp; location=Sequence derived from: Chr_9-CM003379.1:2766915..2767205- (Vigna angularis
ATGAGTAACTTTCGAGTGTGGTTTGTGTTTCTTTTGGCTTTGTCGCTCTC
CAATTCATGTGCTCTTGTCTACTCTCACCATGCTGCATACAAGCCTGACT
GCTACCACCCCACACCTCCAAACCATAGGCATCGTAAAACTCTACCACCG
CCACCGTTGTGGTTGTCGCCGCCGCCACCGGCCGCGTTTTATTTCTTTTC
TCCACCACCTCCTAGTCCTCCTTATTTTCATCGAAGGCATGTGGGACAGG
ACACAAAACACGTGGCCCCACCAAGGCTTCGGGTGCTTTGA
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