Vfaba.Hedin2.R1.2g126920.1
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Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of Vfaba.Hedin2.R1.2g126920.1 vs. UniProtKB/TrEMBL
Match: tr|A0A1S2YDJ0|A0A1S2YDJ0_CICAR (protein MKS1 OS=Cicer arietinum OX=3827 GN=LOC101495243 PE=4 SV=1) HSP 1 Score: 206.838 bits (525), Expect = 4.289e-64 Identity = 138/241 (57.26%), Postives = 156/241 (64.73%), Query Frame = 0 Query: 1 MDQFPYIPSGRSPKRELQGPRPTPLRIHKDSRKINKPPLAPPQLQQQQKQHHQPPRQPIIIYTVSPKILSI-------------------------------------LFTVTEQYHP-------RRVMPRTS---DV----VSDMEGIELMNHGV-ERGNMMFQGILSPGPASLSPIPANFFSPPSSDPNMFSNLLQDFSPALLSSRNFMEPGANFFLPSPSNFVSPQTPSIDLFNYFLD 189
M+ P I +GRSP+RELQGPRPTPLRIHKDS KI+K P PP QQQQ+ PRQPIIIYTVSPK++ TV + P +RV+P TS DV V ++E ++LMNHG+ ERGNMMFQGILSPGPASLSPIP+NFFSPPSSDPNM +N L DFSP L SSRNFME GANFFLPSPSNFVSP TP+IDLFNYFLD
Sbjct: 1 MNHLPDISTGRSPRRELQGPRPTPLRIHKDSHKISKKPPLPPPQQQQQQP----PRQPIIIYTVSPKVIHTTPGDFMNLVQRLTGSTSSSSSNIDPFNGDGTISPAARYATVEKAMSPLGKKQVQQRVVPITSTNHDVIMNDVHELEQVQLMNHGILERGNMMFQGILSPGPASLSPIPSNFFSPPSSDPNMVNNFLHDFSPVLHSSRNFMEGGANFFLPSPSNFVSPHTPTIDLFNYFLD 237
BLAST of Vfaba.Hedin2.R1.2g126920.1 vs. UniProtKB/TrEMBL
Match: tr|A0A2Z6NUI6|A0A2Z6NUI6_TRISU (VQ domain-containing protein OS=Trifolium subterraneum OX=3900 GN=TSUD_404310 PE=4 SV=1) HSP 1 Score: 182.185 bits (461), Expect = 3.518e-54 Identity = 95/106 (89.62%), Postives = 98/106 (92.45%), Query Frame = 0 Query: 88 TSDVVSDMEGIE---LMNHGVERGNMMFQGILSPGPASLSPIPANFFSPPSSDPNMFSNLLQDFSPALLSSRNFMEPGANFFLPSPSNFVSP-QTPSIDLFNYFLD 189
TSDV+SDMEGIE LMNHGVERGNMMFQGILSPGPASLSPIP+NFFSPPSSDPNMFSNLLQD SPALLSSR+FME G NFFLPSPSNFVSP TPSIDLFNYFLD
Sbjct: 148 TSDVISDMEGIEQVQLMNHGVERGNMMFQGILSPGPASLSPIPSNFFSPPSSDPNMFSNLLQDLSPALLSSRHFMEGGPNFFLPSPSNFVSPAHTPSIDLFNYFLD 253 HSP 2 Score: 71.2478 bits (173), Expect = 1.673e-11 Identity = 50/70 (71.43%), Postives = 56/70 (80.00%), Query Frame = 0 Query: 1 MDQFPYIPSGRSPKRELQGPRPTPLRIHKDSRKINK-PPLAPPQLQQQQKQHHQPPRQPIIIYTVSPKIL 69
M+QFP IP+GRSP+RELQGPRPTPLRIHKDS KI K P Q QQ Q+Q PPRQPIIIYTVSPK++
Sbjct: 1 MNQFPDIPTGRSPRRELQGPRPTPLRIHKDSHKIKKPPLAPQQQQQQPQQQQQLPPRQPIIIYTVSPKVI 70
BLAST of Vfaba.Hedin2.R1.2g126920.1 vs. UniProtKB/TrEMBL
Match: tr|A0A2K3PEA4|A0A2K3PEA4_TRIPR (Protein MKS1 OS=Trifolium pratense OX=57577 GN=L195_g010284 PE=4 SV=1) HSP 1 Score: 179.104 bits (453), Expect = 6.040e-53 Identity = 93/105 (88.57%), Postives = 97/105 (92.38%), Query Frame = 0 Query: 90 DVVSDMEGIE---LMNHGVERGNMMFQGILSPGPASLSPIPANFFSPPSSDPNMFSNLLQDFSPALLSSRNFMEPGANFFLPSPSNFVSPQ--TPSIDLFNYFLD 189
DV+SDMEGIE MNHGVERGNMMFQGILSPGPASLSPIP+NFFSPPSSDPNMFSNLLQDFSPALLSSR+FME G NFFLPSPSNF+SPQ TPSIDLFNYFLD
Sbjct: 150 DVISDMEGIEQVQYMNHGVERGNMMFQGILSPGPASLSPIPSNFFSPPSSDPNMFSNLLQDFSPALLSSRHFMEGGPNFFLPSPSNFISPQAHTPSIDLFNYFLD 254 HSP 2 Score: 70.8626 bits (172), Expect = 3.181e-11 Identity = 50/70 (71.43%), Postives = 56/70 (80.00%), Query Frame = 0 Query: 1 MDQFPYIPSGRSPKRELQGPRPTPLRIHKDSRKINK-PPLAPPQLQQQQKQHHQPPRQPIIIYTVSPKIL 69
M+QFP IP+GRSP+RELQGPRPTPLRIHKDS KI K P Q QQQ +Q PPRQPIIIYTVSPK++
Sbjct: 1 MNQFPDIPTGRSPRRELQGPRPTPLRIHKDSHKIKKPPLAPQQQQQQQHQQQLPPPRQPIIIYTVSPKVI 70
BLAST of Vfaba.Hedin2.R1.2g126920.1 vs. UniProtKB/TrEMBL
Match: tr|A0A396IY47|A0A396IY47_MEDTR (VQ domain-containing protein OS=Medicago truncatula OX=3880 GN=MtrunA17_Chr3g0126211 PE=4 SV=1) HSP 1 Score: 176.792 bits (447), Expect = 3.905e-52 Identity = 90/104 (86.54%), Postives = 93/104 (89.42%), Query Frame = 0 Query: 88 TSDVVSDMEGIE---LMNHGVERGNMMFQGILSPGPASLSPIPANFFSPPSSDPNMFSNLLQDFSPALLSSRNFMEPGANFFLPSPSNFVSPQTPSIDLFNYFL 188
TSDV+SDMEGIE LMNHGVERGNMMFQGILSPGPASLSPIP+NFFSPPSSDPNMF+N L D SPAL S RNFME GANF LPSPSNFVSP TPSIDLFNYFL
Sbjct: 144 TSDVISDMEGIEQTQLMNHGVERGNMMFQGILSPGPASLSPIPSNFFSPPSSDPNMFNNFLHDLSPALHSGRNFMEGGANFLLPSPSNFVSPITPSIDLFNYFL 247 HSP 2 Score: 72.4034 bits (176), Expect = 6.804e-12 Identity = 49/69 (71.01%), Postives = 56/69 (81.16%), Query Frame = 0 Query: 1 MDQFPYIPSGRSPKRELQGPRPTPLRIHKDSRKINKPPLAPPQLQQQQKQHHQPPRQPIIIYTVSPKIL 69
M+QFP IP+GRSP+RELQGPRPTPLRIHKDS KI K QQQQ+Q +Q PRQPIIIYTVSPK++
Sbjct: 1 MNQFPDIPTGRSPRRELQGPRPTPLRIHKDSHKIKK--PPLAPQQQQQQQQYQQPRQPIIIYTVSPKVI 67
BLAST of Vfaba.Hedin2.R1.2g126920.1 vs. UniProtKB/TrEMBL
Match: tr|G7J659|G7J659_MEDTR (MKS1-like protein OS=Medicago truncatula OX=3880 GN=11414826 PE=4 SV=1) HSP 1 Score: 176.792 bits (447), Expect = 3.905e-52 Identity = 90/104 (86.54%), Postives = 93/104 (89.42%), Query Frame = 0 Query: 88 TSDVVSDMEGIE---LMNHGVERGNMMFQGILSPGPASLSPIPANFFSPPSSDPNMFSNLLQDFSPALLSSRNFMEPGANFFLPSPSNFVSPQTPSIDLFNYFL 188
TSDV+SDMEGIE LMNHGVERGNMMFQGILSPGPASLSPIP+NFFSPPSSDPNMF+N L D SPAL S RNFME GANF LPSPSNFVSP TPSIDLFNYFL
Sbjct: 144 TSDVISDMEGIEQTQLMNHGVERGNMMFQGILSPGPASLSPIPSNFFSPPSSDPNMFNNFLHDLSPALHSGRNFMEGGANFLLPSPSNFVSPITPSIDLFNYFL 247 HSP 2 Score: 72.4034 bits (176), Expect = 6.804e-12 Identity = 49/69 (71.01%), Postives = 56/69 (81.16%), Query Frame = 0 Query: 1 MDQFPYIPSGRSPKRELQGPRPTPLRIHKDSRKINKPPLAPPQLQQQQKQHHQPPRQPIIIYTVSPKIL 69
M+QFP IP+GRSP+RELQGPRPTPLRIHKDS KI K QQQQ+Q +Q PRQPIIIYTVSPK++
Sbjct: 1 MNQFPDIPTGRSPRRELQGPRPTPLRIHKDSHKIKK--PPLAPQQQQQQQQYQQPRQPIIIYTVSPKVI 67
BLAST of Vfaba.Hedin2.R1.2g126920.1 vs. UniProtKB/TrEMBL
Match: tr|A0A0B2SIY5|A0A0B2SIY5_GLYSO (Protein MKS1 OS=Glycine soja OX=3848 GN=glysoja_024462 PE=4 SV=1) HSP 1 Score: 160.614 bits (405), Expect = 7.170e-46 Identity = 119/247 (48.18%), Postives = 144/247 (58.30%), Query Frame = 0 Query: 1 MDQFPYI-PSGRSPKRELQ--GPRPTPLRIHKDSRKINKPPLAPPQLQQQQKQHHQPPRQPIIIYTVSPKILSI----------------------------------------------LFTVTEQYHP---RRVMPRTSDVVSDMEGIEL-MNHGV-ERGNM-MFQGILSPGPASLSPIPANFFSPPSSDPNMFSNLLQDFSPALLSSRNFMEPGANFFLPSPS---NFVSPQTPSIDLFNYFLD 189
MDQF +I P+ RSP+RELQ GPRPTPLRI+KDS KI KPPLAP Q + + QPIIIYTVSPK++ T+ + P + V+P +++SD++GIE+ + GV ER MFQGILSPGPASLSPIP+NFFSPPSSDP+M S L D SP S RNFME G++F LPSPS +FVSP TPS+DLFNYFLD
Sbjct: 1 MDQFSHIIPTERSPRRELQLQGPRPTPLRINKDSHKIKKPPLAPQQPSHPHQPPPR---QPIIIYTVSPKVIHTTPSDFMNLVQRLTGSSSSSSVVVPNNNNTHVDPFNNGAGMLSPAARYATIEKAMSPMGKKHVLPSGDNIISDVQGIEINIGDGVLERSQQNMFQGILSPGPASLSPIPSNFFSPPSSDPSMVS-FLHDLSPMFQSGRNFME-GSSFVLPSPSSNFSFVSPHTPSMDLFNYFLD 242
BLAST of Vfaba.Hedin2.R1.2g126920.1 vs. UniProtKB/TrEMBL
Match: tr|A0A445L4F4|A0A445L4F4_GLYSO (Protein MKS1 OS=Glycine soja OX=3848 GN=D0Y65_010657 PE=4 SV=1) HSP 1 Score: 160.229 bits (404), Expect = 1.881e-45 Identity = 119/247 (48.18%), Postives = 144/247 (58.30%), Query Frame = 0 Query: 1 MDQFPYI-PSGRSPKRELQ--GPRPTPLRIHKDSRKINKPPLAPPQLQQQQKQHHQPPRQPIIIYTVSPKILSI----------------------------------------------LFTVTEQYHP---RRVMPRTSDVVSDMEGIEL-MNHGV-ERGNM-MFQGILSPGPASLSPIPANFFSPPSSDPNMFSNLLQDFSPALLSSRNFMEPGANFFLPSPS---NFVSPQTPSIDLFNYFLD 189
MDQF +I P+ RSP+RELQ GPRPTPLRI+KDS KI KPPLAP Q + + QPIIIYTVSPK++ T+ + P + V+P +++SD++GIE+ + GV ER MFQGILSPGPASLSPIP+NFFSPPSSDP+M S L D SP S RNFME G++F LPSPS +FVSP TPS+DLFNYFLD
Sbjct: 20 MDQFSHIIPTERSPRRELQLQGPRPTPLRINKDSHKIKKPPLAPQQPSHPHQPPPR---QPIIIYTVSPKVIHTTPSDFMNLVQRLTGSSSSSSVVVPNNNNTHVDPFNNGAGMLSPAARYATIEKAMSPMGKKHVLPSGDNIISDVQGIEINIGDGVLERSQQNMFQGILSPGPASLSPIPSNFFSPPSSDPSMVS-FLHDLSPMFQSGRNFME-GSSFVLPSPSSNFSFVSPHTPSMDLFNYFLD 261
BLAST of Vfaba.Hedin2.R1.2g126920.1 vs. UniProtKB/TrEMBL
Match: tr|A0A1J7H8C9|A0A1J7H8C9_LUPAN (VQ domain-containing protein OS=Lupinus angustifolius OX=3871 GN=TanjilG_14080 PE=4 SV=1) HSP 1 Score: 155.221 bits (391), Expect = 7.216e-44 Identity = 109/236 (46.19%), Postives = 133/236 (56.36%), Query Frame = 0 Query: 3 QFPYIPSGRSPKRELQGPRPTPLRIHKDSRKINKPPLAPPQLQQQQKQHHQPPRQPIIIYTVSPKIL---------------------------------------------SILFTVTEQYHP----RRVMPRTSDVVSDMEGIELMNHGVERGNMMFQGILSPGPASLSPIPANFFSPPSSDPNMFSNLLQDFSPALLSSRNFMEPGANFFLPSPSNFVSPQTPSIDLFNYFLD 189
F I +GRSP+RELQGPRPTPLRI+KDS KI KPPLAP ++ IIIYTVSPK++ + + E+ P ++V P D +S + G+E++NHGVERG+M QGILSPGPASLSPIP++FFSPPS DPNM N L + SPA +RN M+ F LPSP+NFVSP TP IDLFNYFLD
Sbjct: 2 DFQDISTGRSPRRELQGPRPTPLRINKDSHKIKKPPLAPAPQPPPRQP--------IIIYTVSPKVIHTTPDDFMNLVQRLTGSSSSSSSSSLSDMTSSNHPFNSGGGMISPAARYATIEKARPPMGKKQVQP-IGDDISHVGGLEMVNHGVERGSMC-QGILSPGPASLSPIPSSFFSPPSLDPNMV-NFLHELSPA-FQNRNVMDQYGGFILPSPTNFVSPYTPPIDLFNYFLD 225
BLAST of Vfaba.Hedin2.R1.2g126920.1 vs. UniProtKB/TrEMBL
Match: tr|V7B5A9|V7B5A9_PHAVU (VQ domain-containing protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_008G159700g PE=4 SV=1) HSP 1 Score: 152.525 bits (384), Expect = 9.548e-43 Identity = 104/237 (43.88%), Postives = 127/237 (53.59%), Query Frame = 0 Query: 7 IPSGRSPKRELQGPRPTPLRIHKDSRKINKPPLAPPQLQQQQKQHHQPPRQPIIIYTVSP----------------------------KIL-------------------------SILFTVTEQYHPRRVM---PRTSDVVSDMEGIELMNHGVERGNMMFQGILSPGPASLSPIPANFFSPPSSDPNMFSNLLQDFSPALLSSRNFMEPGANFFLPSPSNFVSPQTPSIDLFNYF 187
IPSGRS KR+LQGPRP+PLR++K+S KI KPP+ P Q PPRQP+IIYTVSP K+L + + E P + + P S V D+ G ++++ GV MF+GILSPGPA LSPIP+NF SPPS+DPNM S QD SP L S+RNFME F + SPSNFVSP+TPSIDLFN F
Sbjct: 6 IPSGRSSKRQLQGPRPSPLRVNKESHKIKKPPVVPLPCQLPA-----PPRQPVIIYTVSPKVIHTTPSEFMSLVQRLTGSSSSSSSSNKVLIDPLNDNKDHGGDNNDLSGNLVPSTTAWYAGIEMVRPSQSIKEQPSESRVDVDVGGSDIVSDGVLERPSMFRGILSPGPALLSPIPSNFVSPPSTDPNMVS-FFQDLSPVLHSNRNFME--GTFIMSSPSNFVSPRTPSIDLFNNF 234
BLAST of Vfaba.Hedin2.R1.2g126920.1 vs. UniProtKB/TrEMBL
Match: tr|I3T6T4|I3T6T4_LOTJA (VQ domain-containing protein OS=Lotus japonicus OX=34305 PE=2 SV=1) HSP 1 Score: 151.754 bits (382), Expect = 2.464e-42 Identity = 120/245 (48.98%), Postives = 137/245 (55.92%), Query Frame = 0 Query: 3 QFPY-IPSGRSPKRELQGPRPTPLRIHKDSRKINKPPLAPPQLQQQQKQHHQPPRQPIIIYTVSPKIL-----------------------------------------------SILFTVTEQYHPRRVMPRTSDVVSDMEGI-----ELMNHGV--ERGNMMFQGILSPGPASLSPIPANFFSPP--SSDPNMFSNLLQDFSPALLSSRNFME-PGANFFLPSPSNFVSPQTPSIDLFNYFLD 189
+FP IP GRSP+RELQGPRPTPLRI+KDS KI KPPLAP Q + +PPRQPIIIYTVSPK++ + + E+ + + +DM + +LMNHGV ER MFQGILSPGPASLSPIPA+FFSPP SSDP M S+ QD SPA RNFME G F LPSPSNFVSP T SIDLFNYFLD
Sbjct: 2 EFPADIPMGRSPRRELQGPRPTPLRINKDSHKIKKPPLAP----QASQPPQRPPRQPIIIYTVSPKVIHTTPNDFMNLVQRLTGSTASSSSSSSSFTQVPPANDPFQGNTGMVSPAARYATMEKAMSPMGKKQVTTTDADMSDVGLGGVQLMNHGVVLER-QGMFQGILSPGPASLSPIPASFFSPPAASSDPGMASS-FQDLSPAF--HRNFMEGGGGGFILPSPSNFVSPHTQSIDLFNYFLD 238 The following BLAST results are available for this feature:
BLAST of Vfaba.Hedin2.R1.2g126920.1 vs. UniProtKB/TrEMBL
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs UniProt TrEMBL) Total hits: 10 Position : 0 Zoom : x 1
BLAST of Vfaba.Hedin2.R1.2g126920.1 vs. UniProtKB/TrEMBL
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs UniProt Swissprot) Total hits: 0 Position : 0 Zoom : x 1
BLAST of Vfaba.Hedin2.R1.2g126920.1 vs. UniProtKB/TrEMBL
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs arabidopsis Araport11) Total hits: 0 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterProScan Analysis for Vicia faba inbred line Hedin/2 v1.0 proteins
Date Performed: 2023-05-12 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >Vfaba.Hedin2.R1.2g126920.1_vfh_v1 ID=Vfaba.Hedin2.R1.2g126920.1_vfh_v1; Name=Vfaba.Hedin2.R1.2g126920.1; organism=Vicia faba; type=mRNA; length=570bpback to top protein sequence of Vfaba.Hedin2.R1.2g126920.1_vfh_v1 >Vfaba.Hedin2.R1.2g126920.1_vfh_v1 ID=Vfaba.Hedin2.R1.2g126920.1_vfh_v1; Name=Vfaba.Hedin2.R1.2g126920.1_vfh_v1; organism=Vicia faba; type=polypeptide; length=189bpback to top mRNA from alignment at chr2:769933788..769934603- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>Vfaba.Hedin2.R1.2g126920.1_vfh_v1 ID=Vfaba.Hedin2.R1.2g126920.1_vfh_v1; Name=Vfaba.Hedin2.R1.2g126920.1; organism=Vicia faba; type=mRNA; location=Sequence derived from: chr2:769933788..769934603- (Vicia fababack to top Annotated Terms
The
following terms have been associated with
this mRNA:
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