Vfaba.Hedin2.R1.5g177640.1

Transcript Overview
NameVfaba.Hedin2.R1.5g177640.1
Unique NameVfaba.Hedin2.R1.5g177640.1_vfh_v1
TypemRNA
OrganismVicia faba (Faba bean)
Sequence length711
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
chr5chromosomechr5:1234956700..1234957410 -Vicia faba inbred line Hedin/2 genome v1.0n/a
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Vfaba.Hedin2.R1.5g177640Vfaba.Hedin2.R1.5g177640_vfh_v1Vicia fabagene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vfaba.Hedin2.R1.5g177640.1_vfh_v1-exonVfaba.Hedin2.R1.5g177640.1_vfh_v1-exon-chr5_vfh_v1:1234956700..1234957410Vicia fabaexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vfaba.Hedin2.R1.5g177640.1_vfh_v1-cdsVfaba.Hedin2.R1.5g177640.1_vfh_v1-cds-chr5_vfh_v1:1234956700..1234957410Vicia fabaCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Vfaba.Hedin2.R1.5g177640.1_vfh_v1Vfaba.Hedin2.R1.5g177640.1_vfh_v1Vicia fabapolypeptide
Vfaba.Hedin2.R1.5g177640.1_vfh_v1Vfaba.Hedin2.R1.5g177640.1_vfh_v1-proteinVicia fabapolypeptide


Homology
BLAST of Vfaba.Hedin2.R1.5g177640.1 vs. UniProtKB/TrEMBL
Match: tr|A0A1S2XEM1|A0A1S2XEM1_CICAR (uncharacterized protein LOC101495594 OS=Cicer arietinum OX=3827 GN=LOC101495594 PE=4 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 7.213e-21
Identity = 85/253 (33.60%), Postives = 119/253 (47.04%), Query Frame = 0
Query:    1 MSYMNLKNLIKDEGYRNIKCTWYWNPKYSFSRGLRPLNCDSDVLKFAEDIKGFELVDVYVEHSIEVTPIEDD-------DYGGLNYVHDEVDSD------VQIISNHDEAE--------VEVESEHVEAEV------EDGSEHIEAEVEV------RIDDDEDYIGSGGKI----------SSSSHDDYKLNEHVVEGENVEQNVDLDWTTAIPCDEPGDKVRNYDKDDDSDMLHTPNESGSDEEHV-EFPSF 209
            MS++ +  LIK  GY +IKC WY +PKYSF+RGLRPLN D DV+KFAED+K F ++DV++EHSI+   I D+       +   L    ++V ++      VQI  N  E E        V+ E + +E+E       +  SE ++ E E         ++DEDYI +   I          SS  H + + N       N E+N                       D + D L TP ES  DEE V +FP F
Sbjct:   19 MSHIQITKLIKSLGYMSIKCLWYQHPKYSFTRGLRPLNNDEDVVKFAEDVKWFNIIDVFMEHSIDNPIISDESPIQEPIEAEKLQGEGEQVQTEPVQAETVQIKPNQPETEPDQLDSEPVQTEQDKLESEPIQTEPDQPDSEPVQPESEAVHGEDYLSEEDEDYIATSMMIWIFVNVGDENSSERHANPRGNPGPSSTTNFEEN-----------------------DVNYDDLDTPPESEVDEEDVRKFPKF 248          
BLAST of Vfaba.Hedin2.R1.5g177640.1 vs. UniProtKB/TrEMBL
Match: tr|A0A3Q7YBE4|A0A3Q7YBE4_CICAR (uncharacterized protein LOC113784480 OS=Cicer arietinum OX=3827 GN=LOC113784480 PE=4 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 3.270e-19
Identity = 61/150 (40.67%), Postives = 85/150 (56.67%), Query Frame = 0
Query:    1 MSYMNLKNLIKDEGYRNIKCTWYWNPKYSFSRGLRPLNCDSDVLKFAEDIKGFELVDVYVEHSIEVTPIEDDDYGGLNYVHDEVDSD-VQIISNHDEAEVEV--------ESEHVEAEV-EDGSEHIEAEVEV------RIDDDEDYIGS 134
            MS+M +  ++K  GY + K  WY +PKYSF+RGLRPLN D DVLKFAED+KGF ++DV+VEH I+    E D         D+ + + VQ+ S   + E E         ESE V+ E  +  SE +E E E         ++DEDY+ +
Sbjct:   66 MSHMQITKMVKSLGYMSFKSLWYQHPKYSFTRGLRPLNNDEDVLKFAEDVKGFNVIDVFVEHCIDNPETEPDQPDSEPLQPDQPEPEAVQLESEAVQPESEAVQTEEDKSESEPVQTEPDQPQSEPVEPESEAVHGEDYLSEEDEDYVAN 215          
BLAST of Vfaba.Hedin2.R1.5g177640.1 vs. UniProtKB/TrEMBL
Match: tr|A0A2Z6P7R7|A0A2Z6P7R7_TRISU (ZnF_PMZ domain-containing protein OS=Trifolium subterraneum OX=3900 GN=TSUD_84730 PE=4 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 4.535e-17
Identity = 74/234 (31.62%), Postives = 122/234 (52.14%), Query Frame = 0
Query:    1 MSYMNLKNLIKDEGYRNIKCTWYWNPKYSFSRGLRPLNCDSDVLKFAEDIKGFELVDVYVEHSIEVTPIEDDDYGGLNYVHDEVDSDVQIISNHDEAEVEVESEHV-EAEVEDGSEHIEAEVEVRIDDDEDYIGSGGKISSSSHDDYKLNEHVVEGENVEQNVDL----DWTTAIP-------CDE--PGDKVRNYD---------KDDDSDMLHTPNESGSDEE-HVEFPSFK 210
            MSYM++  LIK  GY + K  +Y +PK + S GLRPL+CD DVLKFA D+ G+E++++YVEH ++ TPI  ++     ++++ ++   +  +  +E  +E+E  +  + E +   E++E E EV +  + +        + S  ++Y  N   V  +  E + D     +W T +P       C    P + V N D         +DDDSD+L TP  S  DE    +FP +K
Sbjct:   74 MSYMDISTLIKSLGYSDFKSLYYRHPKLALSHGLRPLHCDDDVLKFANDVNGYEVIEIYVEHLLD-TPIVVEE-----HINETINGKGKRKAFDEEVVIELEDAYKGDGEGDSEGEYVELEDEVDVQGNANIDDE----NDSEDEEYVANSDDVSDDYTEDDSDFKENWNWATVLPQETVNEVCSNVGPIENVMNLDPIMTAEFELEDDDSDILDTPKGSEIDEATRPKFPKYK 297          
BLAST of Vfaba.Hedin2.R1.5g177640.1 vs. UniProtKB/TrEMBL
Match: tr|A0A2Z6NMD3|A0A2Z6NMD3_TRISU (Uncharacterized protein OS=Trifolium subterraneum OX=3900 GN=TSUD_400350 PE=4 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.182e-16
Identity = 78/235 (33.19%), Postives = 121/235 (51.49%), Query Frame = 0
Query:    1 MSYMNLKNLIKDEGYRNIKCTWYWNPKYSFSRGLRPLNCDSDVLKFAEDIKGFELVDVYVEHSIEVTPIEDDDYGGLNYVHDEVDSDVQIISNHDEAEVEVESEHVEAEVEDGSEHIEAEVEVRIDDDEDYIGSGG--KISSSSHDDYKLNEHVVEGENVEQNVDL----DWTTAIP-------CDE--PGDKVRNYD---------KDDDSDMLHTPNESGSDEE-HVEFPSFK 210
            MSYM++  LIK  GY + K  +Y +PK + S GL PL+CD DVLKFA D+ G+E+++VYVEH ++ TPI  ++     ++++ ++   +  +  +E  +E+E    +A   DG    E E  V +DD+ D  G+      + S  ++Y  N   V  +  E + D     +W T +P       C    P + V N D         +DDDSD+L TP  S  DE    +FP +K
Sbjct:   74 MSYMDISKLIKSLGYSDFKSLYYRHPKLALSHGLSPLHCDDDVLKFANDVNGYEVIEVYVEHLLD-TPIVVEE-----HINETINGKGKRKAFDEEVVIELE----DAYEGDGEGDSEGEY-VELDDEVDVQGNANIDDENDSEDEEYVANSDDVSDDYTEDDSDFEENWNWATVLPQETVNEVCSNVGPIENVMNLDPIMPAEFELEDDDSDILDTPEGSEIDEATRPKFPKYK 297          
BLAST of Vfaba.Hedin2.R1.5g177640.1 vs. UniProtKB/TrEMBL
Match: tr|A0A2Z6PF55|A0A2Z6PF55_TRISU (Uncharacterized protein OS=Trifolium subterraneum OX=3900 GN=TSUD_407250 PE=4 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 4.204e-16
Identity = 73/254 (28.74%), Postives = 123/254 (48.43%), Query Frame = 0
Query:    1 MSYMNLKNLIKDEGYRNIKCTWYWNPKYSFSRGLRPLNCDSDVLKFAEDIKGFELVDVYVEHSIEVTPIEDDDYGGLNYVHDEVDSDVQIISNHDEAEVEVESEHVEAEVEDGSEHIEAEVEVRIDDDEDYIGSGGKISSSSHDDYKLNEHVVEGENVEQNVDLDWTTAIPCD---------EPGDKVRNYD---------KDDDSDMLHTPNESGSDEEHV-EFPSFK--SESSKLRLEAHHKPLHLHSHLNS 233
            MSY ++  L+K  GY   K  +Y +PK + SRGLRPLNCD +VL F EDIKG+E+V+VY+EH ++ TPI              ++ D+     HD+ + +                        ID++ DY+ +  ++S         N++ ++  + E+N    WT+ +P +         +P + V N +         ++ DSD+L+TP  S  DE  V  FP+F+  ++   ++ E   K  +L S +N+
Sbjct:   17 MSYKDVVELVKSLGYTEFKSLYYRHPKLALSRGLRPLNCDDNVLTFVEDIKGYEVVEVYLEHLVD-TPI-------------LIEEDI-----HDKGKGKT-----------------------IDEEVDYVANSEEVS---------NDYTIDESDYEEN--WHWTSVLPEEMVKEVHSNVDPSENVMNLNPNMRVEFEVENYDSDILNTPPGSEDDEATVMNFPTFRMSNDDENIKFEKGMK-FNLKSVVNT 216          
BLAST of Vfaba.Hedin2.R1.5g177640.1 vs. UniProtKB/TrEMBL
Match: tr|A0A2Z6M0H4|A0A2Z6M0H4_TRISU (Uncharacterized protein OS=Trifolium subterraneum OX=3900 GN=TSUD_202990 PE=4 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.893e-16
Identity = 73/222 (32.88%), Postives = 111/222 (50.00%), Query Frame = 0
Query:    1 MSYMNLKNLIKDEGYRNIKCTWYWNPKYSFSRGLRPLNCDSDVLKFAEDIKGFELVDVYVEHSIEVTPIEDDDYGGLNYVHDEVDSDVQIISNHDEAEVEVESEHVEAEVEDGSEHIEAEVEVRIDDDEDYIGSGGKISSSSHDDYKLNEHVVEGENVEQNVDLDWTTAIPCD-----------EPGDKVRNYDKDDDSDMLHTPNESGSDE-EHVEFPSFK 210
             S ++L+N++K  GY ++KC WY +PKYSF  GLRP N DSD  K  ED KG+  +D+YVEHSI+ +PI              +D +  +I + D+    ++   V+    +     E   E   +DDEDYI + G      +DD   +  +V+        D DWT  +P +               +V + D D++SD L TP ES  DE ++ +FP +K
Sbjct:   45 FSVLDLENIVKSLGYVDLKCMWYHHPKYSFVDGLRPFNNDSDFQKLVEDSKGYNTIDLYVEHSID-SPIV------------CLDRETPVIVDIDDEGPLLDEYGVDGVETEEVRVEEGLTES--EDDEDYIANYG----DENDDTDFDGDLVDE-------DWDWTHELPTETFVGNDATVYQRNTTQVEHEDVDNESD-LQTPPESEDDEADNRKFPKYK 239          
BLAST of Vfaba.Hedin2.R1.5g177640.1 vs. UniProtKB/TrEMBL
Match: tr|A0A2Z6N1A6|A0A2Z6N1A6_TRISU (SWIM-type domain-containing protein OS=Trifolium subterraneum OX=3900 GN=TSUD_161700 PE=4 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 9.602e-16
Identity = 84/237 (35.44%), Postives = 123/237 (51.90%), Query Frame = 0
Query:    1 MSYMNLKNLIKDEGYRNIKCTWYWNPKYSFSRGLRPLNCDSDVLKFAEDIKGFELVDVYVEHSIEVTP--IEDD--DYGGLNYVHDEVDSDVQIISNHD---EAEVEVESEHVE-AEVEDGSEHIEAEVEVRIDDDEDYIGSGGKISSSSHDDYKLNEHVVEGENVEQNVDLDWTTAIPCD---------EPGDKVRNYDKDD---------DSDMLHTPNESGSDEEHV-EFPSFK 210
            MSY ++  L+K  G       +Y +PK + SRGLRPLNCD +VL F EDIKG+E+V+VY+EH ++ TP  IE+D  D G    + +EV  DV      D   E EVE ES+ V+ ++ EDG                DY+ +  ++S    DDY ++E      + E+N   DWT+ +P +         +P + V N + +          DSD+L+TP  S  DE  V  FP+F+
Sbjct:   71 MSYKDVVELVKSLGL------YYRHPKLALSRGLRPLNCDDNVLTFVEDIKGYEVVEVYLEHLVD-TPILIEEDIHDKGKGKTIDEEVVIDVDDEYEGDGDYEDEVEGESDKVDLSDTEDG----------------DYVANSEEVS----DDYTIDE-----SDFEEN--WDWTSVLPEEMVKEVHSNVDPSENVMNLNPNMRVEFEVENYDSDILNTPPGSEDDEATVMNFPTFR 273          
BLAST of Vfaba.Hedin2.R1.5g177640.1 vs. UniProtKB/TrEMBL
Match: tr|G7KG91|G7KG91_MEDTR (Uncharacterized protein OS=Medicago truncatula OX=3880 GN=MTR_5g012040 PE=4 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 1.704e-15
Identity = 53/143 (37.06%), Postives = 80/143 (55.94%), Query Frame = 0
Query:   13 EGYRNIKCTWYWNPKYSFSRGLRPLNCDSDVLKFAEDIKGFELVDVYVEHSIEVTPIEDDDYGGL-------------------NYVHDEVDSDVQIISNHDEAEVEVESEHVEAEVEDGSE-HIEAEVEVRIDDDEDYIGSG 135
            E Y++I   WYWN  +SF+RGLRPLN D DVL F EDI GF + DVYV+HS++   +++++   L                   N V  E  ++  +  + +E EVEV++E V  E E   + H  A V+ +++DD D++ SG
Sbjct:    3 EEYKSITYLWYWNLGFSFARGLRPLNNDVDVLNFIEDISGFNVADVYVKHSVDNPIVKEEEIIALKKCNETDFAIGTESDDERINGVEVEFQNEEGVRVDANEIEVEVQNEGVGLEDEVNPQVHDGANVKGQMNDDVDFVPSG 145          
BLAST of Vfaba.Hedin2.R1.5g177640.1 vs. UniProtKB/TrEMBL
Match: tr|A0A371I113|A0A371I113_MUCPR (Uncharacterized protein (Fragment) OS=Mucuna pruriens OX=157652 GN=CR513_07035 PE=4 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.481e-15
Identity = 37/68 (54.41%), Postives = 49/68 (72.06%), Query Frame = 0
Query:    1 MSYMNLKNLIKDEGYRNIKCTWYWNPKYSFSRGLRPLNCDSDVLKFAEDIKGFELVDVYVEHSIEVTP 68
            MSY+++  LIK  GY   K  WY + + S S+GL+PLNCD DVLKF ED+K FE+V V+V+H I+ TP
Sbjct:    8 MSYIDITKLIKSIGYVYFKSLWYQHLRLSLSQGLKPLNCDGDVLKFVEDVKTFEVVSVFVKHLID-TP 74          
BLAST of Vfaba.Hedin2.R1.5g177640.1 vs. UniProtKB/TrEMBL
Match: tr|A0A445FBB8|A0A445FBB8_GLYSO (Uncharacterized protein OS=Glycine soja OX=3848 GN=D0Y65_050248 PE=4 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.358e-15
Identity = 45/111 (40.54%), Postives = 72/111 (64.86%), Query Frame = 0
Query:    1 MSYMNLKNLIKDEGYRNIKCTWYWNPKYSFSRGLRPLNCDSDVLKFAEDIKGFELVDVYVEHSI------EVTPIEDDDYGGLNYVHDE--VDSDVQIISNHDEAEVEVES 103
            MSY++L  +IK  GY+  KC WY +PK +  RGL+PLN DSD+L+ AED+ GF++V+VYVE  +      ++  ++ D+   ++ V  E  V+++VQ+     EA+VE E+
Sbjct:  182 MSYIDLMKVIKSIGYKAFKCLWYRHPKKALCRGLKPLNGDSDILQLAEDVAGFDVVEVYVEDGVIDRCDKKLNDLKGDEVVVIDGVEGEPVVEAEVQV-----EAKVEAEA 287          
The following BLAST results are available for this feature:
BLAST of Vfaba.Hedin2.R1.5g177640.1 vs. UniProtKB/TrEMBL
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs UniProt TrEMBL)
Total hits: 10
Match NameE-valueIdentityDescription
tr|A0A1S2XEM1|A0A1S2XEM1_CICAR7.213e-2133.60uncharacterized protein LOC101495594 OS=Cicer arie... [more]
tr|A0A3Q7YBE4|A0A3Q7YBE4_CICAR3.270e-1940.67uncharacterized protein LOC113784480 OS=Cicer arie... [more]
tr|A0A2Z6P7R7|A0A2Z6P7R7_TRISU4.535e-1731.62ZnF_PMZ domain-containing protein OS=Trifolium sub... [more]
tr|A0A2Z6NMD3|A0A2Z6NMD3_TRISU2.182e-1633.19Uncharacterized protein OS=Trifolium subterraneum ... [more]
tr|A0A2Z6PF55|A0A2Z6PF55_TRISU4.204e-1628.74Uncharacterized protein OS=Trifolium subterraneum ... [more]
tr|A0A2Z6M0H4|A0A2Z6M0H4_TRISU4.893e-1632.88Uncharacterized protein OS=Trifolium subterraneum ... [more]
tr|A0A2Z6N1A6|A0A2Z6N1A6_TRISU9.602e-1635.44SWIM-type domain-containing protein OS=Trifolium s... [more]
tr|G7KG91|G7KG91_MEDTR1.704e-1537.06Uncharacterized protein OS=Medicago truncatula OX=... [more]
tr|A0A371I113|A0A371I113_MUCPR2.481e-1554.41Uncharacterized protein (Fragment) OS=Mucuna pruri... [more]
tr|A0A445FBB8|A0A445FBB8_GLYSO5.358e-1540.54Uncharacterized protein OS=Glycine soja OX=3848 GN... [more]
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BLAST of Vfaba.Hedin2.R1.5g177640.1 vs. UniProtKB/TrEMBL
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs UniProt Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Vfaba.Hedin2.R1.5g177640.1 vs. UniProtKB/TrEMBL
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs arabidopsis Araport11)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan Analysis for Vicia faba inbred line Hedin/2 v1.0 proteins
Date Performed: 2023-05-12
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 177..217

Sequences
The following sequences are available for this feature:

mRNA sequence

>Vfaba.Hedin2.R1.5g177640.1_vfh_v1 ID=Vfaba.Hedin2.R1.5g177640.1_vfh_v1; Name=Vfaba.Hedin2.R1.5g177640.1; organism=Vicia faba; type=mRNA; length=711bp
ATGTCGTATATGAATTTAAAAAATTTGATAAAAGATGAGGGTTATAGGAA
TATCAAGTGTACGTGGTATTGGAACCCCAAATATAGCTTTAGTCGTGGCC
TTAGACCCCTAAACTGTGATAGTGATGTTCTTAAGTTTGCTGAGGATATT
AAGGGTTTTGAATTGGTAGATGTGTATGTTGAGCACTCAATAGAAGTGAC
ACCTATTGAGGATGATGATTATGGTGGTCTAAACTATGTTCATGATGAAG
TTGATTCTGATGTTCAAATTATAAGTAATCATGACGAGGCTGAAGTTGAA
GTTGAAAGTGAACATGTTGAGGCTGAAGTTGAAGATGGAAGTGAACATAT
TGAGGCTGAAGTTGAAGTTAGAATAGATGATGATGAAGACTATATTGGGA
GTGGGGGTAAGATAAGTAGTTCTAGTCATGATGATTATAAGTTGAATGAG
CATGTTGTTGAAGGTGAGAATGTTGAGCAAAATGTGGATTTGGATTGGAC
AACTGCCATTCCATGTGATGAGCCTGGTGATAAGGTTAGAAATTATGACA
AGGATGATGATTCTGATATGTTGCATACACCTAATGAGAGTGGTAGTGAT
GAGGAACACGTGGAGTTTCCTTCTTTTAAAAGTGAGTCCTCAAAGTTGAG
ATTGGAAGCTCATCACAAGCCCCTCCACCTACACAGCCATCTCAACAGTA
GTGTTCTATAA
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protein sequence of Vfaba.Hedin2.R1.5g177640.1_vfh_v1

>Vfaba.Hedin2.R1.5g177640.1_vfh_v1 ID=Vfaba.Hedin2.R1.5g177640.1_vfh_v1; Name=Vfaba.Hedin2.R1.5g177640.1_vfh_v1; organism=Vicia faba; type=polypeptide; length=236bp
MSYMNLKNLIKDEGYRNIKCTWYWNPKYSFSRGLRPLNCDSDVLKFAEDI
KGFELVDVYVEHSIEVTPIEDDDYGGLNYVHDEVDSDVQIISNHDEAEVE
VESEHVEAEVEDGSEHIEAEVEVRIDDDEDYIGSGGKISSSSHDDYKLNE
HVVEGENVEQNVDLDWTTAIPCDEPGDKVRNYDKDDDSDMLHTPNESGSD
EEHVEFPSFKSESSKLRLEAHHKPLHLHSHLNSSVL
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mRNA from alignment at chr5:1234956700..1234957410-

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>Vfaba.Hedin2.R1.5g177640.1_vfh_v1 ID=Vfaba.Hedin2.R1.5g177640.1_vfh_v1; Name=Vfaba.Hedin2.R1.5g177640.1; organism=Vicia faba; type=mRNA; location=Sequence derived from: chr5:1234956700..1234957410- (Vicia faba
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