Vfaba.Hedin2.R1.6g151520.1
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses Orthologs
Syntenic blocks Orthologs
Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of Vfaba.Hedin2.R1.6g151520.1 vs. UniProtKB/TrEMBL
Match: tr|A0A396GPE2|A0A396GPE2_MEDTR (Putative ribonuclease H-like domain-containing protein OS=Medicago truncatula OX=3880 GN=MtrunA17_Chr8g0383051 PE=4 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 1.290e-20 Identity = 46/82 (56.10%), Postives = 61/82 (74.39%), Query Frame = 0 Query: 38 ENMESVGEVVDENQMEPLLVHLCASVILARDFPFHHFELEALKNLYQYLNPNILMPPRNVIEAYVSELYMKEKLKLKHELAT 119 E +E+ EV +Q + + +CAS+IL+ DFPF FE E ++N + LNPNI++PP +VIEAYVS+LYMKEKLKLK ELAT Sbjct: 26 EQLETGDEV---DQFDSRFLPICASMILSNDFPFEFFEREGMRNFMKVLNPNIVLPPVDVIEAYVSDLYMKEKLKLKQELAT 104
BLAST of Vfaba.Hedin2.R1.6g151520.1 vs. UniProtKB/TrEMBL
Match: tr|A0A396GPC8|A0A396GPC8_MEDTR (Putative HAT dimerization domain, ribonuclease H-like domain, hAT-like transposase, RNase-H OS=Medicago truncatula OX=3880 GN=MtrunA17_Chr8g0383081 PE=4 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 8.424e-20 Identity = 47/88 (53.41%), Postives = 64/88 (72.73%), Query Frame = 0 Query: 32 LKKCHKENMESVGEVVDENQMEPLLVHLCASVILARDFPFHHFELEALKNLYQYLNPNILMPPRNVIEAYVSELYMKEKLKLKHELAT 119 +++ +EN+ES+GE+ +Q+ LV CAS+IL+ DFPF FE E + N + LNPN +MPP NVI+AYVS+LY K KLKLK +LAT Sbjct: 7 IEEISQENVESIGEI---DQL--WLVKRCASMILSNDFPFDFFEREGMSNFMKVLNPNAVMPPINVIKAYVSDLYTKAKLKLKQDLAT 89
BLAST of Vfaba.Hedin2.R1.6g151520.1 vs. UniProtKB/TrEMBL
Match: tr|A0A396IDQ4|A0A396IDQ4_MEDTR (Putative HAT dimerization domain, ribonuclease H-like domain, hAT-like transposase, RNase-H OS=Medicago truncatula OX=3880 GN=MtrunA17_Chr4g0052681 PE=4 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 1.559e-19 Identity = 47/83 (56.63%), Postives = 58/83 (69.88%), Query Frame = 0 Query: 37 KENMESVGEVVDENQMEPLLVHLCASVILARDFPFHHFELEALKNLYQYLNPNILMPPRNVIEAYVSELYMKEKLKLKHELAT 119 +E +E EV +QM+ V +CAS ILA D PFH FELE ++ ++LNPNI +PPRNVIEAYVS LY KEK KLK +L T Sbjct: 12 EEKIEFDNEV---DQMDSRFVEICASTILAHDLPFHFFELEGMRKYSEFLNPNIPIPPRNVIEAYVSHLYTKEKPKLKQQLTT 91
BLAST of Vfaba.Hedin2.R1.6g151520.1 vs. UniProtKB/TrEMBL
Match: tr|A0A2K3ND78|A0A2K3ND78_TRIPR (Transposon protein OS=Trifolium pratense OX=57577 GN=L195_g024285 PE=4 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 2.541e-19 Identity = 48/83 (57.83%), Postives = 58/83 (69.88%), Query Frame = 0 Query: 37 KENMESVGEVVDENQMEPLLVHLCASVILARDFPFHHFELEALKNLYQYLNPNILMPPRNVIEAYVSELYMKEKLKLKHELAT 119 +ENME EV +Q E V +CAS+ILA D PFH FE E ++ ++LNPN + P +NVIEAYVS LY KEKLKLK ELAT Sbjct: 12 QENMEFDNEV---DQRESQSVDICASMILAHDLPFHFFEQEVIRKYSEFLNPNTVTPTKNVIEAYVSHLYSKEKLKLKQELAT 91
BLAST of Vfaba.Hedin2.R1.6g151520.1 vs. UniProtKB/TrEMBL
Match: tr|A0A2Z6LT99|A0A2Z6LT99_TRISU (Uncharacterized protein OS=Trifolium subterraneum OX=3900 GN=TSUD_78470 PE=4 SV=1) HSP 1 Score: 89.7373 bits (221), Expect = 3.754e-18 Identity = 41/69 (59.42%), Postives = 53/69 (76.81%), Query Frame = 0 Query: 51 QMEPLLVHLCASVILARDFPFHHFELEALKNLYQYLNPNILMPPRNVIEAYVSELYMKEKLKLKHELAT 119 Q + + +CAS+IL DFPF +FE E +N + LNPN+++PP NVIEAYVS+LYM+EKLKLK ELAT Sbjct: 30 QFDAQFLPICASMILQNDFPFDYFERETTRNFTRQLNPNLVLPPPNVIEAYVSDLYMEEKLKLKQELAT 98
BLAST of Vfaba.Hedin2.R1.6g151520.1 vs. UniProtKB/TrEMBL
Match: tr|A0A2Z6LNB1|A0A2Z6LNB1_TRISU (Uncharacterized protein OS=Trifolium subterraneum OX=3900 GN=TSUD_78440 PE=4 SV=1) HSP 1 Score: 88.9669 bits (219), Expect = 7.300e-18 Identity = 45/81 (55.56%), Postives = 58/81 (71.60%), Query Frame = 0 Query: 38 ENMESVGEVVDENQMEPLLVHLCASVILARDFPFHHFELEALKNLYQYLNPNILMPPRNVIEAYVSELYMKEKLKLKHELA 118 EN+ES ++ +Q + VH CAS+IL D+ F FE AL+NL QYLNP++ MPP NVI++YV +LY KEKLKLK ELA Sbjct: 13 ENLESGADL---SQFDSRTVHTCASMILRNDYCFDFFEHSALRNLAQYLNPDLAMPPINVIKSYVFDLYTKEKLKLKQELA 90
BLAST of Vfaba.Hedin2.R1.6g151520.1 vs. UniProtKB/TrEMBL
Match: tr|A0A2K3NIN1|A0A2K3NIN1_TRIPR (Transposon protein (Fragment) OS=Trifolium pratense OX=57577 GN=L195_g026215 PE=4 SV=1) HSP 1 Score: 87.4261 bits (215), Expect = 1.497e-17 Identity = 44/83 (53.01%), Postives = 57/83 (68.67%), Query Frame = 0 Query: 37 KENMESVGEVVDENQMEPLLVHLCASVILARDFPFHHFELEALKNLYQYLNPNILMPPRNVIEAYVSELYMKEKLKLKHELAT 119 +E ES EV + + + +CAS+IL DFPF +FE E +N Q NPN+++PP NVIEAYVS+LYM+EK KLK ELAT Sbjct: 19 EEEFESDDEV---GRFDSQFLPICASMILQNDFPFDYFERETTRNSTQQFNPNLVLPPPNVIEAYVSDLYMEEKSKLKQELAT 98
BLAST of Vfaba.Hedin2.R1.6g151520.1 vs. UniProtKB/TrEMBL
Match: tr|A0A2Z6MUA2|A0A2Z6MUA2_TRISU (Uncharacterized protein OS=Trifolium subterraneum OX=3900 GN=TSUD_78400 PE=4 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 9.799e-15 Identity = 44/83 (53.01%), Postives = 55/83 (66.27%), Query Frame = 0 Query: 37 KENMESVGEVVDENQMEPLLVHLCASVILARDFPFHHFELEALKNLYQYLNPNILMPPRNVIEAYVSELYMKEKLKLKHELAT 119 +E ME EV +QME L H CA++IL D PF FE ++ + LNPN ++PP+NVIEAYV+ LY KEK KLK ELAT Sbjct: 3 QEKMEFDDEV---DQMESRL-HTCANIILELDLPFDLFEHVGMRRYTESLNPNAVIPPKNVIEAYVTHLYTKEKSKLKQELAT 81
BLAST of Vfaba.Hedin2.R1.6g151520.1 vs. UniProtKB/TrEMBL
Match: tr|A0A392NMP0|A0A392NMP0_9FABA (Zinc finger BED domain-containing protein ricesleeper 2-like (Fragment) OS=Trifolium medium OX=97028 PE=4 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 7.157e-14 Identity = 49/82 (59.76%), Postives = 61/82 (74.39%), Query Frame = 0 Query: 38 ENMESVGEVVDENQMEPLLVHLCASVILARDFPFHHFELEALKNLYQYLNPNILMPPRNVIEAYVSELYMKEKLKLKHELAT 119 ENMES G+ D Q + +V CAS+IL D+PF FE AL+NL +YLNP+ +MPP NVI+AYV +LY+KEKLKLK ELAT Sbjct: 8 ENMES-GD--DLGQFDSQIVRTCASMILQNDYPFDFFERSALRNLAKYLNPDFVMPPINVIKAYVFDLYLKEKLKLKQELAT 86
BLAST of Vfaba.Hedin2.R1.6g151520.1 vs. UniProtKB/TrEMBL
Match: tr|A0A396GW00|A0A396GW00_MEDTR (Putative HAT dimerization domain, ribonuclease H-like domain, hAT-like transposase, RNase-H OS=Medicago truncatula OX=3880 GN=MtrunA17_Chr8g0383041 PE=4 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 1.599e-13 Identity = 40/90 (44.44%), Postives = 60/90 (66.67%), Query Frame = 0 Query: 37 KENMESVGEVV-----DEN--QMEPLLVHLCASVILARDFPFHHFELEALKNLYQYLNPNILMPPRNVIEAYVSELYMKEKLKLKHELAT 119 +ENMES EV DE Q E LV CAS+IL+ D+ F H E +++KN+ ++L+ +I++PP +V+E Y +LY +EKL +K +LAT Sbjct: 3 QENMESDCEVDLLDSDDETMEQKESRLVKTCASMILSSDYSFRHCEYDSMKNIMEWLSQDIVLPPPDVVELYFEDLYTEEKLNIKQQLAT 92 The following BLAST results are available for this feature:
BLAST of Vfaba.Hedin2.R1.6g151520.1 vs. UniProtKB/TrEMBL
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs UniProt TrEMBL) Total hits: 10
BLAST of Vfaba.Hedin2.R1.6g151520.1 vs. UniProtKB/TrEMBL
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs UniProt Swissprot) Total hits: 0
BLAST of Vfaba.Hedin2.R1.6g151520.1 vs. UniProtKB/TrEMBL
Analysis Date: 2023-05-12 (Blastp of Vicia faba inbred line Hedin/2 v1.0 proteins vs arabidopsis Araport11) Total hits: 0
Sequences
The
following sequences are available for this feature:
mRNA sequence >Vfaba.Hedin2.R1.6g151520.1_vfh_v1 ID=Vfaba.Hedin2.R1.6g151520.1_vfh_v1; Name=Vfaba.Hedin2.R1.6g151520.1; organism=Vicia faba; type=mRNA; length=402bpback to top protein sequence of Vfaba.Hedin2.R1.6g151520.1_vfh_v1 >Vfaba.Hedin2.R1.6g151520.1_vfh_v1 ID=Vfaba.Hedin2.R1.6g151520.1_vfh_v1; Name=Vfaba.Hedin2.R1.6g151520.1_vfh_v1; organism=Vicia faba; type=polypeptide; length=133bpback to top mRNA from alignment at chr6:1189417569..1189418126+ Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>Vfaba.Hedin2.R1.6g151520.1_vfh_v1 ID=Vfaba.Hedin2.R1.6g151520.1_vfh_v1; Name=Vfaba.Hedin2.R1.6g151520.1; organism=Vicia faba; type=mRNA; location=Sequence derived from: chr6:1189417569..1189418126+ (Vicia fababack to top |