evm.model.Chr01.10

Transcript Overview
Nameevm.model.Chr01.10
Unique Nameevm.model.Chr01.10_hau_v1
TypemRNA
OrganismVigna unguiculata subsp. sesquipedalis ()
Sequence length216
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr01chromosomeChr01:532645..533159 +Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0n/a
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
vuvuaL001Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
evm.TU.Chr01.10evm.TU.Chr01.10_hau_v1Vigna unguiculata subsp. sesquipedalisgene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
evm.model.Chr01.10.exon1evm.model.Chr01.10.exon1_hau_v1Vigna unguiculata subsp. sesquipedalisexon
evm.model.Chr01.10.exon2evm.model.Chr01.10.exon2_hau_v1Vigna unguiculata subsp. sesquipedalisexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
cds.evm.model.Chr01.10cds.evm.model.Chr01.10_hau_v1Vigna unguiculata subsp. sesquipedalisCDS
cds.evm.model.Chr01.10cds.evm.model.Chr01.10_hau_v1_2Vigna unguiculata subsp. sesquipedalisCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
evm.model.Chr01.10_hau_v1evm.model.Chr01.10_hau_v1Vigna unguiculata subsp. sesquipedalispolypeptide
evm.model.Chr01.10_hau_v1evm.model.Chr01.10_hau_v1-proteinVigna unguiculata subsp. sesquipedalispolypeptide


Homology
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BLAST of evm.model.Chr01.10 vs. UniProtKB/TrEMBL
Match: tr|A0A4D6LLX2|A0A4D6LLX2_VIGUN (Uncharacterized protein OS=Vigna unguiculata OX=3917 GN=DEO72_LG4g259 PE=4 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 1.630e-33
Identity = 59/63 (93.65%), Postives = 61/63 (96.83%), Query Frame = 0 
Query:    9 MFKIGFSKEAPKGERRLEVGEWFLPIGLLSALNDYGANPGGNEESGNALLKEMEDAFGFAEGL 71
            MFKIGFSKEAPKGERRLEVGEWFLPIG+L ALNDYGANPGGNEESG+ALLK MEDAFGFAEGL
Sbjct:    1 MFKIGFSKEAPKGERRLEVGEWFLPIGVLFALNDYGANPGGNEESGDALLKAMEDAFGFAEGL 63
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BLAST of evm.model.Chr01.10 vs. UniProtKB/TrEMBL
Match: tr|A0A4D6NI38|A0A4D6NI38_VIGUN (Uncharacterized protein OS=Vigna unguiculata OX=3917 GN=DEO72_LG10g3556 PE=4 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 5.382e-26
Identity = 49/50 (98.00%), Postives = 50/50 (100.00%), Query Frame = 0 
Query:   22 ERRLEVGEWFLPIGLLSALNDYGANPGGNEESGNALLKEMEDAFGFAEGL 71
            ERRLEVGEWF+PIGLLSALNDYGANPGGNEESGNALLKEMEDAFGFAEGL
Sbjct:   43 ERRLEVGEWFMPIGLLSALNDYGANPGGNEESGNALLKEMEDAFGFAEGL 92
[Close]
BLAST of evm.model.Chr01.10 vs. UniProtKB/TrEMBL
Match: tr|A0A4D6LMQ5|A0A4D6LMQ5_VIGUN (Uncharacterized protein OS=Vigna unguiculata OX=3917 GN=DEO72_LG4g258 PE=4 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 5.207e-25
Identity = 47/52 (90.38%), Postives = 50/52 (96.15%), Query Frame = 0 
Query:   20 KGERRLEVGEWFLPIGLLSALNDYGANPGGNEESGNALLKEMEDAFGFAEGL 71
            +GERRLEVGEWFLPIG+L ALNDYGANPGGNEESG+ALLK MEDAFGFAEGL
Sbjct:    7 RGERRLEVGEWFLPIGVLFALNDYGANPGGNEESGDALLKAMEDAFGFAEGL 58
[Close]
BLAST of evm.model.Chr01.10 vs. UniProtKB/TrEMBL
Match: tr|A0A4D6KPF3|A0A4D6KPF3_VIGUN (Uncharacterized protein OS=Vigna unguiculata OX=3917 GN=DEO72_LG1g3200 PE=4 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.108e-24
Identity = 47/50 (94.00%), Postives = 48/50 (96.00%), Query Frame = 0 
Query:   22 ERRLEVGEWFLPIGLLSALNDYGANPGGNEESGNALLKEMEDAFGFAEGL 71
            ERRLEVGEWFLPIG+LSA NDYGANPGGNEESGNA LKEMEDAFGFAEGL
Sbjct:   33 ERRLEVGEWFLPIGVLSASNDYGANPGGNEESGNAFLKEMEDAFGFAEGL 82
The following BLAST results are available for this feature:
BLAST of evm.model.Chr01.10 vs.
Analysis Date: 2023-06-13 (Blastp of Vigna unguiculata subsp. sesquipedalis line A147 proteins vs UniProt Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of evm.model.Chr01.10 vs.
Analysis Date: 2023-06-13 (Blastp of Vigna unguiculata subsp. sesquipedalis line A147 proteins vs arabidopsis Araport11)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of evm.model.Chr01.10 vs. UniProtKB/TrEMBL
Analysis Date: 2023-06-13 (Blastp of Vigna unguiculata subsp. sesquipedalis line A147 proteins vs UniProt TrEMBL)
Total hits: 4
Match NameE-valueIdentityDescription
tr|A0A4D6LLX2|A0A4D6LLX2_VIGUN1.630e-3393.65Uncharacterized protein OS=Vigna unguiculata OX=39... [more]
tr|A0A4D6NI38|A0A4D6NI38_VIGUN5.382e-2698.00Uncharacterized protein OS=Vigna unguiculata OX=39... [more]
tr|A0A4D6LMQ5|A0A4D6LMQ5_VIGUN5.207e-2590.38Uncharacterized protein OS=Vigna unguiculata OX=39... [more]
tr|A0A4D6KPF3|A0A4D6KPF3_VIGUN2.108e-2494.00Uncharacterized protein OS=Vigna unguiculata OX=39... [more]
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Sequences
The following sequences are available for this feature:

mRNA sequence

>evm.model.Chr01.10_hau_v1 ID=evm.model.Chr01.10_hau_v1; Name=evm.model.Chr01.10; organism=Vigna unguiculata subsp. sesquipedalis; type=mRNA; length=216bp
ATGCTAACGAAAAAGGTTGCTGCAATGTTCAAGATTGGTTTTAGCAAGGA
AGCCCCGAAAGGGGAAAGACGGCTAGAGGTTGGGGAATGGTTCTTGCCGA
TAGGGTTGTTGTCTGCATTGAATGATTATGGTGCGAATCCAGGTGGGAAT
GAAGAGAGTGGTAATGCCCTTTTAAAAGAAATGGAAGATGCTTTTGGGTT
TGCTGAAGGGTTATGA
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protein sequence of evm.model.Chr01.10_hau_v1

>evm.model.Chr01.10_hau_v1 ID=evm.model.Chr01.10_hau_v1; Name=evm.model.Chr01.10_hau_v1; organism=Vigna unguiculata subsp. sesquipedalis; type=polypeptide; length=71bp
MLTKKVAAMFKIGFSKEAPKGERRLEVGEWFLPIGLLSALNDYGANPGGN
EESGNALLKEMEDAFGFAEGL
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mRNA from alignment at Chr01:532645..533159+

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>evm.model.Chr01.10_hau_v1 ID=evm.model.Chr01.10_hau_v1; Name=evm.model.Chr01.10; organism=Vigna unguiculata subsp. sesquipedalis; type=mRNA; length=515bp; location=Sequence derived from: Chr01:532645..533159+ (Vigna unguiculata subsp. sesquipedalis
ATGCTAACGAAAAAGGTTGCTGCAATGTTCAAGATTGGTTTTAGCAAGGA
AGCCCCGAAAGGTGTGTGATTAAGTGAGTTAATGATTTTGTCACATTCAC
TAATCTTTTTCCCTCTCAACTCTTTATCATGATTATTGAACGTGCATATT
AATGATTTATGCAGGTTAATATGAATGTGCTCATAGCCAACAATGTTTTC
TTCTCAACAAAGAGGTTAATGCACCAATCTACAATTGTCATGGGCTCGTG
TTTTTTGCTTGATCTCCCTTCCCTTTTTATGATAAAAAAAATCATTGCCA
TGGCCTCTATGCATAGTTCTATTATTATATGTATGGAAAACATTCTTACT
TCTTTCTCAGGGGAAAGACGGCTAGAGGTTGGGGAATGGTTCTTGCCGAT
AGGGTTGTTGTCTGCATTGAATGATTATGGTGCGAATCCAGGTGGGAATG
AAGAGAGTGGTAATGCCCTTTTAAAAGAAATGGAAGATGCTTTTGGGTTT
GCTGAAGGGTTATGA
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Coding sequence (CDS) from alignment at Chr01:532645..533159+

>evm.model.Chr01.10_hau_v1 ID=evm.model.Chr01.10_hau_v1; Name=evm.model.Chr01.10; organism=Vigna unguiculata subsp. sesquipedalis; type=CDS; length=216bp; location=Sequence derived from: Chr01:532645..533159+ (Vigna unguiculata subsp. sesquipedalis
ATGCTAACGAAAAAGGTTGCTGCAATGTTCAAGATTGGTTTTAGCAAGGA
AGCCCCGAAAGGGGAAAGACGGCTAGAGGTTGGGGAATGGTTCTTGCCGA
TAGGGTTGTTGTCTGCATTGAATGATTATGGTGCGAATCCAGGTGGGAAT
GAAGAGAGTGGTAATGCCCTTTTAAAAGAAATGGAAGATGCTTTTGGGTT
TGCTGAAGGGTTATGA
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