rna-XM_014648345.2

Transcript Overview
Namerna-XM_014648345.2
Unique Namerna-XM_014648345.2_VrVC1973A-SNU_v1
TypemRNA
OrganismVigna radiata (Mung bean, green gram)
Sequence length399
Product50S ribosomal protein L31, chloroplastic
References
External references for this mRNA
DatabaseAccession
GeneID106764118
GenbankXM_014648345.2
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
chr06chromosomechr06:36234818..36235581 +Vigna radiata cv. VC1973A genome v6.0n/a
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
anvrvL0114Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvrvL0729Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
caivrvL364Cicer arietinum ICC 4958 genome v2Cicer arietinum
cavrvL314Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
cavrvL453Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ccvrvL0721Cajanus cajan Asha genome v1.0Cajanus cajan
ccvrvL1089Cajanus cajan Asha genome v1.0Cajanus cajan
crvrvL499Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
pvvrvL046Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
psvrvL513Pisum sativum Cameor genome v1aPisum sativum
pvvrvL759Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
tifvrvL273Vicia faba cv. Tiffany genome v1.0Vicia faba
tifvrvL363Vicia faba cv. Tiffany genome v1.0Vicia faba
vrvvrvL056Vigna radiata cv. VC1973A genome v6.0Vigna radiata
vrvvrvR197Vigna radiata cv. VC1973A genome v6.0Vigna radiata
vfhvrvL285Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
vfhvrvL377Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
vrvvssR550Vicia sativa cv. Studenica genome v1.0Vicia sativa
vrvvssR591Vicia sativa cv. Studenica genome v1.0Vicia sativa
vrvvssR605Vicia sativa cv. Studenica genome v1.0Vicia sativa
vrvzwsR462Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
vrvvuaR390Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
vrvvuR425Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
vrvzwsR486Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
vrvzwsR501Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
vrvvuaR405Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
vrvzwsR508Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
vrvvuR448Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
vrvvuaR437Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
vrvvuR459Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
canvrvL288Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
canvrvL430Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
avjvrvL456Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjvrvL604Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
carvrvL287Cicer arietinum
carvrvL413Cicer arietinum
ccavrvL457Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccavrvL589Cajanus cajan cv. Asha genome v2.0Cajanus cajan
vrvvumR446Vigna umbellata FF25 genome v1.0Vigna umbellata
vrvvumR465Vigna umbellata FF25 genome v1.0Vigna umbellata
vrvvumR473Vigna umbellata FF25 genome v1.0Vigna umbellata
vrvvumR504Vigna umbellata FF25 genome v1.0Vigna umbellata
vrvvvaR525Vicia villosa cv. AU Merit genome v1.0Vicia villosa
vrvvvaR535Vicia villosa cv. AU Merit genome v1.0Vicia villosa
vrvvvaR564Vicia villosa cv. AU Merit genome v1.0Vicia villosa
vrvvstR446Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
vrvvstR459Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
vrvvstR464Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
vrvvstR467Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
vrvvstR500Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
vasvrvL238Vigna angularis cv. Shumari genome v1.a1Vigna angularis
vasvrvL302Vigna angularis cv. Shumari genome v1.a1Vigna angularis
pvfvrvL039Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
pvfvrvL706Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
vrvvunR399Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
vrvvunR422Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
vrvvunR433Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata

Orthologs
Gene/TranscriptAssemblySpecies
Vigst.03G182100.01Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
rna-TanjilR_08192Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Phvul.001G012400.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
rna-TanjilR_31014Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Psat6g009240.1Pisum sativum Cameor genome v1aPisum sativum
Ca_10785Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
Vfaba.Hedin2.R1.3g231560.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
Va07G070260.2Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
jg35158.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Vigun08g013400.2Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
XM_058869336.1Vicia villosa cv. AU Merit genome v1.0Vicia villosa
Cc_v2.0_10924.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan
Vigan.03G284200.01Vigna angularis cv. Shumari genome v1.a1Vigna angularis
Psat06G0017500-T1Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
rna-KK1_026838Cajanus cajan Asha genome v1.0Cajanus cajan
Vum_03G02006.1Vigna umbellata FF25 genome v1.0Vigna umbellata
rna-XM_004499124.3Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
Vigun08g013400.2Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
Vfaba.Tiffany.R1.3g188840.1Vicia faba cv. Tiffany genome v1.0Vicia faba
Ca_08786.1Cicer arietinum ICC 4958 genome v2Cicer arietinum
evm.model.Chr08.594Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
PvulFLAVERTChr01.1000102Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
gene-LOC106764118gene-LOC106764118_VrVC1973A-SNU_v1Vigna radiatagene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-XM_014648345.2-1exon-XM_014648345.2-1_VrVC1973A-SNU_v1Vigna radiataexon
exon-XM_014648345.2-2exon-XM_014648345.2-2_VrVC1973A-SNU_v1Vigna radiataexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
cds-XP_014503831.1cds-XP_014503831.1_VrVC1973A-SNU_v1Vigna radiataCDS
cds-XP_014503831.1cds-XP_014503831.1_VrVC1973A-SNU_v1_2Vigna radiataCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna-XM_014648345.2_VrVC1973A-SNU_v1rna-XM_014648345.2_VrVC1973A-SNU_v1Vigna radiatapolypeptide
rna-XM_014648345.2_VrVC1973A-SNU_v1rna-XM_014648345.2_VrVC1973A-SNU_v1-proteinVigna radiatapolypeptide


Homology
[Close]
BLAST of rna-XM_014648345.2 vs. UniProtKB/Swiss-Prot
Match: sp|Q9FWS4|RK31_ARATH (50S ribosomal protein L31, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL31 PE=2 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 2.379e-53
Identity = 83/133 (62.41%), Postives = 100/133 (75.19%), Query Frame = 0 
Query:    1 MAQSLTNTFIQGTRFLPLPPPKKNVGRVVQCG-------------IRCRKKDIHPEFHGEAKVYCNGELVMTTGGTQKEYVVDVWSGNHPFYLGNRSAVMVSDDQVEKFRKKFGELTQIMEIPVLKGEIVIPS 120
            MA SL N+F+Q +  +P    +K V   V+ G             I CRKK++HPEFH +AKVYCNGELVMTTGGT+KEYVVDVWSGNHPFYLGNRSA+MV  DQVEKFRK+F  L++IMEIPVLKGEI++P+
Sbjct:    1 MAVSLPNSFLQISPCVPSLQLRKPVMAAVKGGKQSVRRSSNTVVQITCRKKELHPEFHEDAKVYCNGELVMTTGGTKKEYVVDVWSGNHPFYLGNRSALMVDADQVEKFRKRFAGLSEIMEIPVLKGEIIMPT 133
[Close]
BLAST of rna-XM_014648345.2 vs. UniProtKB/Swiss-Prot
Match: sp|P82249|RK31_SPIOL (50S ribosomal protein L31, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL31 PE=1 SV=2)

HSP 1 Score: 162.925 bits (411), Expect = 1.083e-51
Identity = 77/123 (62.60%), Postives = 93/123 (75.61%), Query Frame = 0 
Query:    1 MAQSLTNTFIQGTRFLPLPPPKKNVGRVVQCGIR----CRKKDIHPEFHGEAKVYCNGELVMTTGGTQKEYVVDVWSGNHPFYLGNRSAVMVSDDQVEKFRKKFGELTQIMEIPVLKGEIVIP 119
            M  +L+N F+     +P  P    + +     +R    CRK DIHPEF  +AKVYCNGELVMTTGGTQK+Y V+VWSGNHPFYLGNRSA+++  DQVEKFRKK+GELTQIMEIPVLKGEI++P
Sbjct:    1 MVLTLSNQFLAK---IPATPKTLTLPKTSSSTLRPQWSCRKSDIHPEFREDAKVYCNGELVMTTGGTQKDYTVEVWSGNHPFYLGNRSALLLDADQVEKFRKKYGELTQIMEIPVLKGEIILP 120
[Close]
BLAST of rna-XM_014648345.2 vs. UniProtKB/Swiss-Prot
Match: sp|Q5N0T7|RL31_SYNP6 (50S ribosomal protein L31 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) OX=269084 GN=rpmE PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.060e-21
Identity = 39/67 (58.21%), Postives = 51/67 (76.12%), Query Frame = 0 
Query:   37 KKDIHPEFHGEAKVYCNGELVMTTGGTQKEYVVDVWSGNHPFYLGNRSAVMVSDDQVEKFRKKFGEL 103
            K DIHP+++ EAKVYCNGE VMT G TQ E  VDVWSGNHPFY G +  ++ ++ +VE+F +K+G L
Sbjct:    3 KADIHPQWYPEAKVYCNGEEVMTVGSTQPELHVDVWSGNHPFYTGTQK-IIDTEGRVERFLRKYGML 68
[Close]
BLAST of rna-XM_014648345.2 vs. UniProtKB/Swiss-Prot
Match: sp|Q31L35|RL31_SYNE7 (50S ribosomal protein L31 OS=Synechococcus elongatus (strain PCC 7942 / FACHB-805) OX=1140 GN=rpmE PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.060e-21
Identity = 39/67 (58.21%), Postives = 51/67 (76.12%), Query Frame = 0 
Query:   37 KKDIHPEFHGEAKVYCNGELVMTTGGTQKEYVVDVWSGNHPFYLGNRSAVMVSDDQVEKFRKKFGEL 103
            K DIHP+++ EAKVYCNGE VMT G TQ E  VDVWSGNHPFY G +  ++ ++ +VE+F +K+G L
Sbjct:    3 KADIHPQWYPEAKVYCNGEEVMTVGSTQPELHVDVWSGNHPFYTGTQK-IIDTEGRVERFLRKYGML 68
[Close]
BLAST of rna-XM_014648345.2 vs. UniProtKB/Swiss-Prot
Match: sp|Q8YPK8|RL31_NOSS1 (50S ribosomal protein L31 OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576) OX=103690 GN=rpmE PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.856e-20
Identity = 36/65 (55.38%), Postives = 51/65 (78.46%), Query Frame = 0 
Query:   37 KKDIHPEFHGEAKVYCNGELVMTTGGTQKEYVVDVWSGNHPFYLGNRSAVMVSDDQVEKFRKKFG 101
            K DIHP+++ EAKVYCNG++VMT G T+ E  VDVWSGNHPFY G +  ++ ++ +VE+F +K+G
Sbjct:    3 KSDIHPKWYPEAKVYCNGQVVMTVGSTKPELHVDVWSGNHPFYTGTQK-IIDTEGRVERFLRKYG 66
[Close]
BLAST of rna-XM_014648345.2 vs. UniProtKB/Swiss-Prot
Match: sp|Q3MF92|RL31_TRIV2 (50S ribosomal protein L31 OS=Trichormus variabilis (strain ATCC 29413 / PCC 7937) OX=240292 GN=rpmE PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.209e-20
Identity = 36/65 (55.38%), Postives = 51/65 (78.46%), Query Frame = 0 
Query:   37 KKDIHPEFHGEAKVYCNGELVMTTGGTQKEYVVDVWSGNHPFYLGNRSAVMVSDDQVEKFRKKFG 101
            K DIHP+++ EAKVYCNG++VMT G T+ E  VDVWSGNHPFY G +  ++ ++ +VE+F +K+G
Sbjct:    3 KSDIHPKWYPEAKVYCNGQVVMTVGSTKPELHVDVWSGNHPFYTGTQK-IIDTEGRVERFLRKYG 66
[Close]
BLAST of rna-XM_014648345.2 vs. UniProtKB/Swiss-Prot
Match: sp|Q46IT7|RL31_PROMT (50S ribosomal protein L31 OS=Prochlorococcus marinus (strain NATL2A) OX=59920 GN=rpmE PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.552e-20
Identity = 36/65 (55.38%), Postives = 50/65 (76.92%), Query Frame = 0 
Query:   37 KKDIHPEFHGEAKVYCNGELVMTTGGTQKEYVVDVWSGNHPFYLGNRSAVMVSDDQVEKFRKKFG 101
            K DIHP ++ EAKV CNGE+VMTTG TQ E  VDVWSGNHPF+ G +  ++ ++ +V++F +K+G
Sbjct:    3 KSDIHPTWYPEAKVICNGEVVMTTGATQPEIQVDVWSGNHPFFTGTQ-KILDTEGRVDRFMRKYG 66
[Close]
BLAST of rna-XM_014648345.2 vs. UniProtKB/Swiss-Prot
Match: sp|Q7V9Y9|RL31_PROMA (50S ribosomal protein L31 OS=Prochlorococcus marinus (strain SARG / CCMP1375 / SS120) OX=167539 GN=rpmE PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.607e-20
Identity = 36/65 (55.38%), Postives = 51/65 (78.46%), Query Frame = 0 
Query:   37 KKDIHPEFHGEAKVYCNGELVMTTGGTQKEYVVDVWSGNHPFYLGNRSAVMVSDDQVEKFRKKFG 101
            KKDIHP ++ +AKV CNGE+VMTTG TQ E  VDVWSGNHPF+ G +  ++ ++ +V++F +K+G
Sbjct:    3 KKDIHPNWYPDAKVICNGEVVMTTGSTQPEIHVDVWSGNHPFFTGTQ-KILDTEGRVDRFMRKYG 66
[Close]
BLAST of rna-XM_014648345.2 vs. UniProtKB/Swiss-Prot
Match: sp|Q110D6|RL31_TRIEI (50S ribosomal protein L31 OS=Trichodesmium erythraeum (strain IMS101) OX=203124 GN=rpmE PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.296e-20
Identity = 36/65 (55.38%), Postives = 50/65 (76.92%), Query Frame = 0 
Query:   37 KKDIHPEFHGEAKVYCNGELVMTTGGTQKEYVVDVWSGNHPFYLGNRSAVMVSDDQVEKFRKKFG 101
            K DIHPE++ EAKVYCNGE+VMT G TQ E  VDVWSGNHP++ G +  ++ ++ +VE+F +K+ 
Sbjct:    3 KADIHPEWYPEAKVYCNGEVVMTVGSTQPEIHVDVWSGNHPYFTGTQK-IIDTEGRVERFMRKYS 66
[Close]
BLAST of rna-XM_014648345.2 vs. UniProtKB/Swiss-Prot
Match: sp|B0C425|RL31_ACAM1 (50S ribosomal protein L31 OS=Acaryochloris marina (strain MBIC 11017) OX=329726 GN=rpmE PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.421e-20
Identity = 36/65 (55.38%), Postives = 52/65 (80.00%), Query Frame = 0 
Query:   37 KKDIHPEFHGEAKVYCNGELVMTTGGTQKEYVVDVWSGNHPFYLGNRSAVMVSDDQVEKFRKKFG 101
            K DIHP+++ EAKVYC+GE+VMT G TQ+E  VDVWSGNHPF+ G +  ++ ++ +VE+F +K+G
Sbjct:    3 KPDIHPKWYPEAKVYCDGEVVMTVGSTQEELHVDVWSGNHPFFTGTQK-IIDTEGRVERFMRKYG 66
[Close]
BLAST of rna-XM_014648345.2 vs. Araport11
Match: AT1G75350.1 (| Ribosomal protein L31 | Chr1:28272163-28272687 FORWARD LENGTH=144 | 201606)

HSP 1 Score: 167.548 bits (423), Expect = 2.434e-54
Identity = 83/133 (62.41%), Postives = 100/133 (75.19%), Query Frame = 0 
Query:    1 MAQSLTNTFIQGTRFLPLPPPKKNVGRVVQCG-------------IRCRKKDIHPEFHGEAKVYCNGELVMTTGGTQKEYVVDVWSGNHPFYLGNRSAVMVSDDQVEKFRKKFGELTQIMEIPVLKGEIVIPS 120
            MA SL N+F+Q +  +P    +K V   V+ G             I CRKK++HPEFH +AKVYCNGELVMTTGGT+KEYVVDVWSGNHPFYLGNRSA+MV  DQVEKFRK+F  L++IMEIPVLKGEI++P+
Sbjct:    1 MAVSLPNSFLQISPCVPSLQLRKPVMAAVKGGKQSVRRSSNTVVQITCRKKELHPEFHEDAKVYCNGELVMTTGGTKKEYVVDVWSGNHPFYLGNRSALMVDADQVEKFRKRFAGLSEIMEIPVLKGEIIMPT 133
[Close]
BLAST of rna-XM_014648345.2 vs. UniProtKB/TrEMBL
Match: tr|A0A1S3UCT7|A0A1S3UCT7_VIGRR (50S ribosomal protein L31 OS=Vigna radiata var. radiata OX=3916 GN=LOC106764118 PE=3 SV=1)

HSP 1 Score: 273.478 bits (698), Expect = 6.656e-93
Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 0 
Query:    1 MAQSLTNTFIQGTRFLPLPPPKKNVGRVVQCGIRCRKKDIHPEFHGEAKVYCNGELVMTTGGTQKEYVVDVWSGNHPFYLGNRSAVMVSDDQVEKFRKKFGELTQIMEIPVLKGEIVIPSRRKGVSKGGKKK 132
            MAQSLTNTFIQGTRFLPLPPPKKNVGRVVQCGIRCRKKDIHPEFHGEAKVYCNGELVMTTGGTQKEYVVDVWSGNHPFYLGNRSAVMVSDDQVEKFRKKFGELTQIMEIPVLKGEIVIPSRRKGVSKGGKKK
Sbjct:    1 MAQSLTNTFIQGTRFLPLPPPKKNVGRVVQCGIRCRKKDIHPEFHGEAKVYCNGELVMTTGGTQKEYVVDVWSGNHPFYLGNRSAVMVSDDQVEKFRKKFGELTQIMEIPVLKGEIVIPSRRKGVSKGGKKK 132
[Close]
BLAST of rna-XM_014648345.2 vs. UniProtKB/TrEMBL
Match: tr|A0A0S3RQC7|A0A0S3RQC7_PHAAN (50S ribosomal protein L31 OS=Vigna angularis var. angularis OX=157739 GN=Vigan.03G284200 PE=3 SV=1)

HSP 1 Score: 270.781 bits (691), Expect = 9.587e-92
Identity = 129/132 (97.73%), Postives = 132/132 (100.00%), Query Frame = 0 
Query:    1 MAQSLTNTFIQGTRFLPLPPPKKNVGRVVQCGIRCRKKDIHPEFHGEAKVYCNGELVMTTGGTQKEYVVDVWSGNHPFYLGNRSAVMVSDDQVEKFRKKFGELTQIMEIPVLKGEIVIPSRRKGVSKGGKKK 132
            MAQS+TNTFIQGTRFLPLPPPK+NVGRVVQCG+RCRKKDIHPEFHGEAKVYCNGELVMTTGGTQKEYVVDVWSGNHPFYLGNRSAVMVSDDQVEKFRKKFGELTQIMEIPVLKGEIVIPSRRKGVSKGGKKK
Sbjct:    1 MAQSVTNTFIQGTRFLPLPPPKRNVGRVVQCGVRCRKKDIHPEFHGEAKVYCNGELVMTTGGTQKEYVVDVWSGNHPFYLGNRSAVMVSDDQVEKFRKKFGELTQIMEIPVLKGEIVIPSRRKGVSKGGKKK 132
[Close]
BLAST of rna-XM_014648345.2 vs. UniProtKB/TrEMBL
Match: tr|V7CTY7|V7CTY7_PHAVU (50S ribosomal protein L31 OS=Phaseolus vulgaris OX=3885 GN=PHAVU_001G012400g PE=3 SV=1)

HSP 1 Score: 242.276 bits (617), Expect = 1.508e-80
Identity = 113/122 (92.62%), Postives = 119/122 (97.54%), Query Frame = 0 
Query:    1 MAQSLTNTFIQGTRFLPLPPPKKNVGRVVQCGIRCRKKDIHPEFHGEAKVYCNGELVMTTGGTQKEYVVDVWSGNHPFYLGNRSAVMVSDDQVEKFRKKFGELTQIMEIPVLKGEIVIPSRR 122
            MAQS+TNTF+QGT FLPLP PKKNV RVVQCG++CRKKDIHP+FHG+AKVYCNGELVMTTGGTQKEYVVDVWSGNHPFYLGNRSAVMVSDDQVEKFRKKFGELTQIMEIPVLKGEIVIPSRR
Sbjct:    1 MAQSVTNTFLQGTPFLPLPSPKKNVARVVQCGVQCRKKDIHPQFHGDAKVYCNGELVMTTGGTQKEYVVDVWSGNHPFYLGNRSAVMVSDDQVEKFRKKFGELTQIMEIPVLKGEIVIPSRR 122
[Close]
BLAST of rna-XM_014648345.2 vs. UniProtKB/TrEMBL
Match: tr|A0A4D6MDK9|A0A4D6MDK9_VIGUN (50S ribosomal protein L31 OS=Vigna unguiculata OX=3917 GN=DEO72_LG7g127 PE=3 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 6.843e-74
Identity = 115/122 (94.26%), Postives = 120/122 (98.36%), Query Frame = 0 
Query:    1 MAQSLTNTFIQGTRFLPLPPPKKNVGRVVQCGIRCRKKDIHPEFHGEAKVYCNGELVMTTGGTQKEYVVDVWSGNHPFYLGNRSAVMVSDDQVEKFRKKFGELTQIMEIPVLKGEIVIPSRR 122
            MAQS+TNTF++GT  LPLPPPKKNVGRVVQCG+RCRKKDIHPEFHG+AKVYCNGELVMTTGGTQKEYVVDVWSGNHPFYLGNRSAVMVSDDQVEKFRKKFGELTQIMEIPVLKGEIVIPSRR
Sbjct:    1 MAQSVTNTFLRGTPILPLPPPKKNVGRVVQCGVRCRKKDIHPEFHGDAKVYCNGELVMTTGGTQKEYVVDVWSGNHPFYLGNRSAVMVSDDQVEKFRKKFGELTQIMEIPVLKGEIVIPSRR 122
[Close]
BLAST of rna-XM_014648345.2 vs. UniProtKB/TrEMBL
Match: tr|A0A371G4T0|A0A371G4T0_MUCPR (50S ribosomal protein L31 OS=Mucuna pruriens OX=157652 GN=RPL31 PE=3 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 9.428e-72
Identity = 102/122 (83.61%), Postives = 113/122 (92.62%), Query Frame = 0 
Query:    1 MAQSLTNTFIQGTRFLPLPPPKKNVGRVVQCGIRCRKKDIHPEFHGEAKVYCNGELVMTTGGTQKEYVVDVWSGNHPFYLGNRSAVMVSDDQVEKFRKKFGELTQIMEIPVLKGEIVIPSRR 122
            MAQ ++NTF+QG  FLP+  PKKNV R V+CG+ CRKKDIHPEFH +AKVYCNGELVMTTGGT+KEYVVDVWSGNHPFYLGNRSAVMV+DDQVEKFRKKFGEL+Q+MEIPVLKGEIVIPSRR
Sbjct:    1 MAQCVSNTFVQGKPFLPVAVPKKNVVRAVKCGVWCRKKDIHPEFHEDAKVYCNGELVMTTGGTRKEYVVDVWSGNHPFYLGNRSAVMVADDQVEKFRKKFGELSQLMEIPVLKGEIVIPSRR 122
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BLAST of rna-XM_014648345.2 vs. UniProtKB/TrEMBL
Match: tr|A0A445GBS9|A0A445GBS9_GLYSO (50S ribosomal protein L31 OS=Glycine soja OX=3848 GN=D0Y65_046967 PE=3 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 3.157e-68
Identity = 103/124 (83.06%), Postives = 112/124 (90.32%), Query Frame = 0 
Query:    1 MAQSLT-NTFIQGTRFLPLPP-PKKNVGRVVQCGIRCRKKDIHPEFHGEAKVYCNGELVMTTGGTQKEYVVDVWSGNHPFYLGNRSAVMVSDDQVEKFRKKFGELTQIMEIPVLKGEIVIPSRR 122
            MAQ +T NTF+QG  FLP+P  P KNV RVVQCG+ CRKK+IHP+FH EAKVYCNGELV+TTGGTQKEYVVDVWSGNHPFYLG+RSA MVSDDQVEKFRKKFGEL +IMEIPVLKGEIVIPSRR
Sbjct:    1 MAQCVTKNTFVQGKPFLPVPAAPTKNVRRVVQCGVWCRKKEIHPQFHEEAKVYCNGELVLTTGGTQKEYVVDVWSGNHPFYLGSRSASMVSDDQVEKFRKKFGELKEIMEIPVLKGEIVIPSRR 124
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BLAST of rna-XM_014648345.2 vs. UniProtKB/TrEMBL
Match: tr|C6SYN1|C6SYN1_SOYBN (50S ribosomal protein L31 OS=Glycine max OX=3847 GN=100499959 PE=2 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 3.157e-68
Identity = 103/124 (83.06%), Postives = 112/124 (90.32%), Query Frame = 0 
Query:    1 MAQSLT-NTFIQGTRFLPLPP-PKKNVGRVVQCGIRCRKKDIHPEFHGEAKVYCNGELVMTTGGTQKEYVVDVWSGNHPFYLGNRSAVMVSDDQVEKFRKKFGELTQIMEIPVLKGEIVIPSRR 122
            MAQ +T NTF+QG  FLP+P  P KNV RVVQCG+ CRKK+IHP+FH EAKVYCNGELV+TTGGTQKEYVVDVWSGNHPFYLG+RSA MVSDDQVEKFRKKFGEL +IMEIPVLKGEIVIPSRR
Sbjct:    1 MAQCVTKNTFVQGKPFLPVPAAPTKNVRRVVQCGVWCRKKEIHPQFHEEAKVYCNGELVLTTGGTQKEYVVDVWSGNHPFYLGSRSASMVSDDQVEKFRKKFGELKEIMEIPVLKGEIVIPSRR 124
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BLAST of rna-XM_014648345.2 vs. UniProtKB/TrEMBL
Match: tr|A0A6P4D0N9|A0A6P4D0N9_ARADU (50S ribosomal protein L31 OS=Arachis duranensis OX=130453 GN=LOC110272340 PE=3 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 5.774e-68
Identity = 102/132 (77.27%), Postives = 113/132 (85.61%), Query Frame = 0 
Query:    1 MAQSLTNTFIQGTRFLPLPPPKKNVGRVVQCGIRCRKKDIHPEFHGEAKVYCNGELVMTTGGTQKEYVVDVWSGNHPFYLGNRSAVMVSDDQVEKFRKKFGELTQIMEIPVLKGEIVIPSRRKGVSKGGKKK 132
            MAQ +TNTF+    F PLP   K VG   + G+ CRKKDIHP++H +AKVYCNGELVMTTGGTQKEYVVDVWSGNHPFYLG+RSAVMV DDQVEKFRKKF ELT+IMEIPVLKGEIVIPSRR+G+ KGGKKK
Sbjct:    1 MAQCITNTFLHPKPFHPLPSKTKPVGNC-RVGVTCRKKDIHPQYHEDAKVYCNGELVMTTGGTQKEYVVDVWSGNHPFYLGSRSAVMVDDDQVEKFRKKFSELTEIMEIPVLKGEIVIPSRRRGIQKGGKKK 131
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BLAST of rna-XM_014648345.2 vs. UniProtKB/TrEMBL
Match: tr|A0A444WP21|A0A444WP21_ARAHY (50S ribosomal protein L31 OS=Arachis hypogaea OX=3818 GN=Ahy_Scaffold6g107850 PE=3 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 5.774e-68
Identity = 102/132 (77.27%), Postives = 113/132 (85.61%), Query Frame = 0 
Query:    1 MAQSLTNTFIQGTRFLPLPPPKKNVGRVVQCGIRCRKKDIHPEFHGEAKVYCNGELVMTTGGTQKEYVVDVWSGNHPFYLGNRSAVMVSDDQVEKFRKKFGELTQIMEIPVLKGEIVIPSRRKGVSKGGKKK 132
            MAQ +TNTF+    F PLP   K VG   + G+ CRKKDIHP++H +AKVYCNGELVMTTGGTQKEYVVDVWSGNHPFYLG+RSAVMV DDQVEKFRKKF ELT+IMEIPVLKGEIVIPSRR+G+ KGGKKK
Sbjct:    1 MAQCITNTFLHPKPFHPLPSKTKPVGNC-RVGVTCRKKDIHPQYHEDAKVYCNGELVMTTGGTQKEYVVDVWSGNHPFYLGSRSAVMVDDDQVEKFRKKFSELTEIMEIPVLKGEIVIPSRRRGIQKGGKKK 131
[Close]
BLAST of rna-XM_014648345.2 vs. UniProtKB/TrEMBL
Match: tr|A0A6P4DV34|A0A6P4DV34_ARADU (50S ribosomal protein L31 OS=Arachis duranensis OX=130453 GN=LOC107495993 PE=3 SV=1)

HSP 1 Score: 209.92 bits (533), Expect = 9.253e-68
Identity = 101/132 (76.52%), Postives = 113/132 (85.61%), Query Frame = 0 
Query:    1 MAQSLTNTFIQGTRFLPLPPPKKNVGRVVQCGIRCRKKDIHPEFHGEAKVYCNGELVMTTGGTQKEYVVDVWSGNHPFYLGNRSAVMVSDDQVEKFRKKFGELTQIMEIPVLKGEIVIPSRRKGVSKGGKKK 132
            MAQ +TNTF+    F PLP   K VG   + G+ CRKKDIHP++H +AKVYCNGELVMTTGGTQKEYVVDVWSGNHPFYLG+RSAVMV DDQVEKFRKKF ELT+IMEIPVLKGEI+IPSRR+G+ KGGKKK
Sbjct:    1 MAQCITNTFLHPKPFHPLPSKTKPVGNC-RIGVTCRKKDIHPQYHEDAKVYCNGELVMTTGGTQKEYVVDVWSGNHPFYLGSRSAVMVDDDQVEKFRKKFSELTEIMEIPVLKGEIIIPSRRRGIQKGGKKK 131
The following BLAST results are available for this feature:
BLAST of rna-XM_014648345.2 vs. UniProtKB/Swiss-Prot
Analysis Date: 2023-06-20 (Blastp of Vigna radiata cv. VC1973A proteins vs UniProt Swissprot)
Total hits: 10
Match NameE-valueIdentityDescription
sp|Q9FWS4|RK31_ARATH2.379e-5362.4150S ribosomal protein L31, chloroplastic OS=Arabid... [more]
sp|P82249|RK31_SPIOL1.083e-5162.6050S ribosomal protein L31, chloroplastic OS=Spinac... [more]
sp|Q5N0T7|RL31_SYNP62.060e-2158.2150S ribosomal protein L31 OS=Synechococcus sp. (st... [more]
sp|Q31L35|RL31_SYNE72.060e-2158.2150S ribosomal protein L31 OS=Synechococcus elongat... [more]
sp|Q8YPK8|RL31_NOSS11.856e-2055.3850S ribosomal protein L31 OS=Nostoc sp. (strain PC... [more]
sp|Q3MF92|RL31_TRIV22.209e-2055.3850S ribosomal protein L31 OS=Trichormus variabilis... [more]
sp|Q46IT7|RL31_PROMT2.552e-2055.3850S ribosomal protein L31 OS=Prochlorococcus marin... [more]
sp|Q7V9Y9|RL31_PROMA3.607e-2055.3850S ribosomal protein L31 OS=Prochlorococcus marin... [more]
sp|Q110D6|RL31_TRIEI4.296e-2055.3850S ribosomal protein L31 OS=Trichodesmium erythra... [more]
sp|B0C425|RL31_ACAM14.421e-2055.3850S ribosomal protein L31 OS=Acaryochloris marina ... [more]
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BLAST of rna-XM_014648345.2 vs. Araport11
Analysis Date: 2023-06-20 (Blastp of Vigna radiata cv. VC1973A proteins vs arabidopsis Araport11)
Total hits: 1
Match NameE-valueIdentityDescription
AT1G75350.12.434e-5462.41| Ribosomal protein L31 | Chr1:28272163-28272687 F... [more]
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BLAST of rna-XM_014648345.2 vs. UniProtKB/TrEMBL
Analysis Date: 2023-06-20 (Blastp of Vigna radiata cv. VC1973A proteins vs UniProt TrEMBL)
Total hits: 10
Match NameE-valueIdentityDescription
tr|A0A1S3UCT7|A0A1S3UCT7_VIGRR6.656e-93100.0050S ribosomal protein L31 OS=Vigna radiata var. ra... [more]
tr|A0A0S3RQC7|A0A0S3RQC7_PHAAN9.587e-9297.7350S ribosomal protein L31 OS=Vigna angularis var. ... [more]
tr|V7CTY7|V7CTY7_PHAVU1.508e-8092.6250S ribosomal protein L31 OS=Phaseolus vulgaris OX... [more]
tr|A0A4D6MDK9|A0A4D6MDK9_VIGUN6.843e-7494.2650S ribosomal protein L31 OS=Vigna unguiculata OX=... [more]
tr|A0A371G4T0|A0A371G4T0_MUCPR9.428e-7283.6150S ribosomal protein L31 OS=Mucuna pruriens OX=15... [more]
tr|A0A445GBS9|A0A445GBS9_GLYSO3.157e-6883.0650S ribosomal protein L31 OS=Glycine soja OX=3848 ... [more]
tr|C6SYN1|C6SYN1_SOYBN3.157e-6883.0650S ribosomal protein L31 OS=Glycine max OX=3847 G... [more]
tr|A0A6P4D0N9|A0A6P4D0N9_ARADU5.774e-6877.2750S ribosomal protein L31 OS=Arachis duranensis OX... [more]
tr|A0A444WP21|A0A444WP21_ARAHY5.774e-6877.2750S ribosomal protein L31 OS=Arachis hypogaea OX=3... [more]
tr|A0A6P4DV34|A0A6P4DV34_ARADU9.253e-6876.5250S ribosomal protein L31 OS=Arachis duranensis OX... [more]
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InterPro
Analysis Name: InterProScan Analysis for Vigna radiata cv. VC1973A genome v1.0
Date Performed: 2023-06-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002150Ribosomal protein L31PRINTSPR01249RIBOSOMALL31coord: 37..54
score: 36.39
coord: 66..81
score: 50.31
IPR002150Ribosomal protein L31PFAMPF01197Ribosomal_L31coord: 37..101
e-value: 8.0E-17
score: 61.2
IPR002150Ribosomal protein L31TIGRFAMTIGR00105TIGR00105coord: 37..102
e-value: 3.4E-15
score: 53.9
IPR002150Ribosomal protein L31PANTHERPTHR3328050S RIBOSOMAL PROTEIN L31, CHLOROPLASTICcoord: 1..131
IPR042105Ribosomal protein L31 superfamilyGENE3D4.10.830.30Ribosomal protein L31coord: 37..104
e-value: 1.5E-17
score: 65.4
IPR034704L28p-likeSUPERFAMILY143800L28p-likecoord: 37..103

Sequences
The following sequences are available for this feature:

mRNA sequence

>rna-XM_014648345.2_VrVC1973A-SNU_v1 ID=rna-XM_014648345.2_VrVC1973A-SNU_v1; Name=rna-XM_014648345.2; organism=Vigna radiata; type=mRNA; length=399bp
ATGGCGCAGAGTCTGACTAACACATTCATCCAAGGAACACGCTTTCTTCC
ACTTCCACCTCCCAAGAAAAACGTGGGGAGAGTGGTGCAGTGTGGGATTC
GGTGCAGGAAGAAGGATATACACCCGGAGTTCCATGGGGAAGCCAAGGTG
TACTGTAACGGAGAGCTGGTGATGACGACGGGTGGGACCCAGAAGGAGTA
TGTGGTGGACGTGTGGTCGGGGAACCACCCCTTCTACCTCGGCAACCGCT
CGGCGGTTATGGTGAGCGACGACCAGGTGGAGAAGTTTAGGAAGAAGTTC
GGGGAGCTCACGCAGATTATGGAGATTCCTGTCCTCAAAGGAGAGATTGT
TATCCCCTCTAGACGCAAGGGGGTTTCCAAGGGAGGCAAAAAGAAGTGA
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protein sequence of rna-XM_014648345.2_VrVC1973A-SNU_v1

>rna-XM_014648345.2_VrVC1973A-SNU_v1 ID=rna-XM_014648345.2_VrVC1973A-SNU_v1; Name=rna-XM_014648345.2_VrVC1973A-SNU_v1; organism=Vigna radiata; type=polypeptide; length=132bp
MAQSLTNTFIQGTRFLPLPPPKKNVGRVVQCGIRCRKKDIHPEFHGEAKV
YCNGELVMTTGGTQKEYVVDVWSGNHPFYLGNRSAVMVSDDQVEKFRKKF
GELTQIMEIPVLKGEIVIPSRRKGVSKGGKKK
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mRNA from alignment at chr06:36234818..36235581+

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna-XM_014648345.2_VrVC1973A-SNU_v1 ID=rna-XM_014648345.2_VrVC1973A-SNU_v1; Name=rna-XM_014648345.2; organism=Vigna radiata; type=mRNA; length=764bp; location=Sequence derived from: chr06:36234818..36235581+ (Vigna radiata
TGTCTGTCCCTAACCATAATCTCATCCTTTGTCACAAACCGATAGGTACC
GGAAAATGGCGCAGAGTCTGACTAACACATTCATCCAAGGAACACGCTTT
CTTCCACTTCCACCTCCCAAGAAAAACGTAATCAAATTCAAACTCAGAGT
ATCAAGTTTGAGTGTGGAATCATGAATTTTGACGgagtttttgtttgaat
ttgttgGCAGGTGGGGAGAGTGGTGCAGTGTGGGATTCGGTGCAGGAAGA
AGGATATACACCCGGAGTTCCATGGGGAAGCCAAGGTGTACTGTAACGGA
GAGCTGGTGATGACGACGGGTGGGACCCAGAAGGAGTATGTGGTGGACGT
GTGGTCGGGGAACCACCCCTTCTACCTCGGCAACCGCTCGGCGGTTATGG
TGAGCGACGACCAGGTGGAGAAGTTTAGGAAGAAGTTCGGGGAGCTCACG
CAGATTATGGAGATTCCTGTCCTCAAAGGAGAGATTGTTATCCCCTCTAG
ACGCAAGGGGGTTTCCAAGGGAGGCAAAAAGAAGTGATCTTCTCTTCTtg
gtaactttttttttgtcaatttcaaTTGGTGTAATATGATCAAACACTTC
TCTCAACTGTTTGAAAAAATGCTGCTATGGATATTGCTTTCAGCAAACGG
GTGAATGTGGATATGTTTGTCACTGGTAAAAAAATGCATTGGGTTTCATT
GTGTTGATTTTGCTCTGACAGATAAAACAATCCGggtgttacattttttt
tttcggttGGATTA
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Coding sequence (CDS) from alignment at chr06:36234818..36235581+

>rna-XM_014648345.2_VrVC1973A-SNU_v1 ID=rna-XM_014648345.2_VrVC1973A-SNU_v1; Name=rna-XM_014648345.2; organism=Vigna radiata; type=CDS; length=399bp; location=Sequence derived from: chr06:36234818..36235581+ (Vigna radiata
ATGGCGCAGAGTCTGACTAACACATTCATCCAAGGAACACGCTTTCTTCC
ACTTCCACCTCCCAAGAAAAACGTGGGGAGAGTGGTGCAGTGTGGGATTC
GGTGCAGGAAGAAGGATATACACCCGGAGTTCCATGGGGAAGCCAAGGTG
TACTGTAACGGAGAGCTGGTGATGACGACGGGTGGGACCCAGAAGGAGTA
TGTGGTGGACGTGTGGTCGGGGAACCACCCCTTCTACCTCGGCAACCGCT
CGGCGGTTATGGTGAGCGACGACCAGGTGGAGAAGTTTAGGAAGAAGTTC
GGGGAGCTCACGCAGATTATGGAGATTCCTGTCCTCAAAGGAGAGATTGT
TATCCCCTCTAGACGCAAGGGGGTTTCCAAGGGAGGCAAAAAGAAGTGA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR002150Ribosomal_bL31
IPR042105Ribosomal_bL31_sf
IPR034704Ribosomal_bL28/bL31-like_sf
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome