evm.Ca_v2.0_10344

Transcript Overview
Nameevm.Ca_v2.0_10344
Unique NamedrCicArie.Frontier.2.0.Ca_v2.0_10344.1
TypemRNA
OrganismCicer arietinum (chickpea)
Sequence length294
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Ca4_v2.0chromosomeCa4_v2.0:22758853..22759629 +Cicer arietinum cv. CDC Frontier genome v2.0n/a
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
evm.Ca_v2.0_10344drCicArie.Frontier.2.0.Ca_v2.0_10344Cicer arietinumgene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
drCicArie.Frontier.2.0.cds.Ca_v2.0_10344.1drCicArie.Frontier.2.0.cds.Ca_v2.0_10344.1Cicer arietinumCDS
drCicArie.Frontier.2.0.cds.Ca_v2.0_10344.1drCicArie.Frontier.2.0.cds.Ca_v2.0_10344.1_2Cicer arietinumCDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
drCicArie.Frontier.2.0.Ca_v2.0_10344.1.exon1drCicArie.Frontier.2.0.Ca_v2.0_10344.1.exon1Cicer arietinumexon
drCicArie.Frontier.2.0.Ca_v2.0_10344.1.exon2drCicArie.Frontier.2.0.Ca_v2.0_10344.1.exon2Cicer arietinumexon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
drCicArie.Frontier.2.0.Ca_v2.0_10344.1drCicArie.Frontier.2.0.Ca_v2.0_10344.1Cicer arietinumpolypeptide
drCicArie.Frontier.2.0.Ca_v2.0_10344.1drCicArie.Frontier.2.0.Ca_v2.0_10344.1-proteinCicer arietinumpolypeptide


Homology
[Close]
BLAST of evm.Ca_v2.0_10344 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr3:3102291-3103801 FORWARD LENGTH=230)

HSP 1 Score: 67.781 bits (164), Expect = 5.262e-15
Identity = 40/80 (50.00%), Postives = 44/80 (55.00%), Query Frame = 0 
Query:   17 AEAVSTSRRAVCVPSMRTNVDSENMITNWNCAFLGFGFMQLRRAKTPESDYKTLPNGLKYCDLKVGNAAEAVKGSRVALR 96
            AEAVSTSRRA                              LR +K PESD+ TLPNGLKY D+KVGN AEAVKGSRVA+ 
Sbjct:   80 AEAVSTSRRA------------------------------LRASKLPESDFTTLPNGLKYYDIKVGNGAEAVKGSRVAVH 129
[Close]
BLAST of evm.Ca_v2.0_10344 vs. ExPASy Swiss-Prot (2024)
Match: sp|Q9SR70|FK164_ARATH (Peptidyl-prolyl cis-trans isomerase FKBP16-4, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=FKBP16-4 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.139e-14
Identity = 40/80 (50.00%), Postives = 44/80 (55.00%), Query Frame = 0 
Query:   17 AEAVSTSRRAVCVPSMRTNVDSENMITNWNCAFLGFGFMQLRRAKTPESDYKTLPNGLKYCDLKVGNAAEAVKGSRVALR 96
            AEAVSTSRRA                              LR +K PESD+ TLPNGLKY D+KVGN AEAVKGSRVA+ 
Sbjct:   80 AEAVSTSRRA------------------------------LRASKLPESDFTTLPNGLKYYDIKVGNGAEAVKGSRVAVH 129
[Close]
BLAST of evm.Ca_v2.0_10344 vs. ExPASy TrEMBL (2024)
Match: tr|A0A9D4W488|A0A9D4W488_PEA (Uncharacterized protein OS=Pisum sativum OX=3888 GN=KIW84_062100 PE=4 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.396e-19
Identity = 50/98 (51.02%), Postives = 56/98 (57.14%), Query Frame = 0 
Query:    1 MFLCYVISWWN-YTCDVAEAVSTSRRAVCVPSMRTNVDSENMITNWNCAFLGFGFMQLRRAKTPESDYKTLPNGLKYCDLKVGNAAEAVKGSRVALRL 97
            +  C + ++   Y CDVAEAVSTSRRA                              LR AK PESD+KTLPNGLKY DLKVGN AEAVKGSRVA+RL
Sbjct:   64 LLTCLLTTFAGVYACDVAEAVSTSRRA------------------------------LRGAKIPESDFKTLPNGLKYYDLKVGNGAEAVKGSRVAVRL 131
[Close]
BLAST of evm.Ca_v2.0_10344 vs. ExPASy TrEMBL (2024)
Match: tr|A0A1S2Y0V9|A0A1S2Y0V9_CICAR (peptidylprolyl isomerase OS=Cicer arietinum OX=3827 GN=LOC101499165 PE=4 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 8.070e-18
Identity = 48/85 (56.47%), Postives = 49/85 (57.65%), Query Frame = 0 
Query:   12 YTCDVAEAVSTSRRAVCVPSMRTNVDSENMITNWNCAFLGFGFMQLRRAKTPESDYKTLPNGLKYCDLKVGNAAEAVKGSRVALR 96
            Y CDVAEAVSTSRRA                              LR AK PESDYKTLPNGLKY DLKVGN AEAVKGSRVA+ 
Sbjct:   84 YACDVAEAVSTSRRA------------------------------LRGAKIPESDYKTLPNGLKYYDLKVGNGAEAVKGSRVAIH 138
[Close]
BLAST of evm.Ca_v2.0_10344 vs. ExPASy TrEMBL (2024)
Match: tr|A0A2K3NPP4|A0A2K3NPP4_TRIPR (peptidylprolyl isomerase OS=Trifolium pratense OX=57577 GN=L195_g001433 PE=4 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 8.642e-18
Identity = 47/85 (55.29%), Postives = 49/85 (57.65%), Query Frame = 0 
Query:   12 YTCDVAEAVSTSRRAVCVPSMRTNVDSENMITNWNCAFLGFGFMQLRRAKTPESDYKTLPNGLKYCDLKVGNAAEAVKGSRVALR 96
            Y CDVAEAVSTSRRA                              LR AK PESDYKTLPNGLKY DLKVG+ AEAVKGSRVA+ 
Sbjct:   30 YACDVAEAVSTSRRA------------------------------LRGAKIPESDYKTLPNGLKYYDLKVGDGAEAVKGSRVAIH 84
[Close]
BLAST of evm.Ca_v2.0_10344 vs. ExPASy TrEMBL (2024)
Match: tr|A0A2Z6MCZ6|A0A2Z6MCZ6_TRISU (peptidylprolyl isomerase OS=Trifolium subterraneum OX=3900 GN=TSUD_392750 PE=4 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 9.381e-18
Identity = 47/85 (55.29%), Postives = 49/85 (57.65%), Query Frame = 0 
Query:   12 YTCDVAEAVSTSRRAVCVPSMRTNVDSENMITNWNCAFLGFGFMQLRRAKTPESDYKTLPNGLKYCDLKVGNAAEAVKGSRVALR 96
            Y CDVAEAVSTSRRA                              LR AK PESDYKTLPNGLKY DLKVG+ AEAVKGSRVA+ 
Sbjct:   23 YACDVAEAVSTSRRA------------------------------LRGAKIPESDYKTLPNGLKYYDLKVGDGAEAVKGSRVAIH 77
[Close]
BLAST of evm.Ca_v2.0_10344 vs. ExPASy TrEMBL (2024)
Match: tr|A0A9D4W489|A0A9D4W489_PEA (peptidylprolyl isomerase OS=Pisum sativum OX=3888 GN=KIW84_062100 PE=4 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.128e-17
Identity = 47/85 (55.29%), Postives = 49/85 (57.65%), Query Frame = 0 
Query:   12 YTCDVAEAVSTSRRAVCVPSMRTNVDSENMITNWNCAFLGFGFMQLRRAKTPESDYKTLPNGLKYCDLKVGNAAEAVKGSRVALR 96
            Y CDVAEAVSTSRRA                              LR AK PESD+KTLPNGLKY DLKVGN AEAVKGSRVA+ 
Sbjct:   42 YACDVAEAVSTSRRA------------------------------LRGAKIPESDFKTLPNGLKYYDLKVGNGAEAVKGSRVAIH 96
[Close]
BLAST of evm.Ca_v2.0_10344 vs. ExPASy TrEMBL (2024)
Match: tr|A0A9D4W605|A0A9D4W605_PEA (peptidylprolyl isomerase OS=Pisum sativum OX=3888 GN=KIW84_062100 PE=4 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 2.112e-17
Identity = 48/97 (49.48%), Postives = 54/97 (55.67%), Query Frame = 0 
Query:    1 MFLCYVISWWN-YTCDVAEAVSTSRRAVCVPSMRTNVDSENMITNWNCAFLGFGFMQLRRAKTPESDYKTLPNGLKYCDLKVGNAAEAVKGSRVALR 96
            +  C + ++   Y CDVAEAVSTSRRA                              LR AK PESD+KTLPNGLKY DLKVGN AEAVKGSRVA+ 
Sbjct:   64 LLTCLLTTFAGVYACDVAEAVSTSRRA------------------------------LRGAKIPESDFKTLPNGLKYYDLKVGNGAEAVKGSRVAIH 130
[Close]
BLAST of evm.Ca_v2.0_10344 vs. ExPASy TrEMBL (2024)
Match: tr|I3SW13|I3SW13_MEDTR (peptidylprolyl isomerase OS=Medicago truncatula OX=3880 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 9.309e-17
Identity = 46/85 (54.12%), Postives = 49/85 (57.65%), Query Frame = 0 
Query:   12 YTCDVAEAVSTSRRAVCVPSMRTNVDSENMITNWNCAFLGFGFMQLRRAKTPESDYKTLPNGLKYCDLKVGNAAEAVKGSRVALR 96
            Y CDVAEAVSTSRRA                              LR AK PESD+KTLPNGLKY DLKVG+ AEAVKGSRVA+ 
Sbjct:   82 YACDVAEAVSTSRRA------------------------------LRGAKIPESDFKTLPNGLKYYDLKVGDGAEAVKGSRVAIH 136
[Close]
BLAST of evm.Ca_v2.0_10344 vs. ExPASy TrEMBL (2024)
Match: tr|G7I9E0|G7I9E0_MEDTR (peptidylprolyl isomerase OS=Medicago truncatula OX=3880 GN=11420788 PE=4 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 9.869e-17
Identity = 46/85 (54.12%), Postives = 49/85 (57.65%), Query Frame = 0 
Query:   12 YTCDVAEAVSTSRRAVCVPSMRTNVDSENMITNWNCAFLGFGFMQLRRAKTPESDYKTLPNGLKYCDLKVGNAAEAVKGSRVALR 96
            Y CDVAEAVSTSRRA                              LR AK PESD+KTLPNGLKY DLKVG+ AEAVKGSRVA+ 
Sbjct:  102 YACDVAEAVSTSRRA------------------------------LRGAKIPESDFKTLPNGLKYYDLKVGDGAEAVKGSRVAIH 156
[Close]
BLAST of evm.Ca_v2.0_10344 vs. ExPASy TrEMBL (2024)
Match: tr|A0A8B8M4Q3|A0A8B8M4Q3_ABRPR (peptidylprolyl isomerase OS=Abrus precatorius OX=3816 GN=LOC113871081 PE=4 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.791e-16
Identity = 46/85 (54.12%), Postives = 49/85 (57.65%), Query Frame = 0 
Query:   12 YTCDVAEAVSTSRRAVCVPSMRTNVDSENMITNWNCAFLGFGFMQLRRAKTPESDYKTLPNGLKYCDLKVGNAAEAVKGSRVALR 96
            YTCDVAEAVSTSRRA                              LR AK PESD+ TLPNGLKY DLKVG+ AEAVKGSRVA+ 
Sbjct:   80 YTCDVAEAVSTSRRA------------------------------LRGAKIPESDFTTLPNGLKYYDLKVGDGAEAVKGSRVAIH 134
[Close]
BLAST of evm.Ca_v2.0_10344 vs. ExPASy TrEMBL (2024)
Match: tr|A0A1J7GHB8|A0A1J7GHB8_LUPAN (peptidylprolyl isomerase OS=Lupinus angustifolius OX=3871 GN=TanjilG_26952 PE=4 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.121e-16
Identity = 46/85 (54.12%), Postives = 48/85 (56.47%), Query Frame = 0 
Query:   12 YTCDVAEAVSTSRRAVCVPSMRTNVDSENMITNWNCAFLGFGFMQLRRAKTPESDYKTLPNGLKYCDLKVGNAAEAVKGSRVALR 96
            Y CDVAEAVSTSRRA                              LR AK PESD+KTLPNGLKY DL VGN AEAVKGSRVA+ 
Sbjct:   80 YACDVAEAVSTSRRA------------------------------LRGAKIPESDFKTLPNGLKYYDLTVGNGAEAVKGSRVAVH 134
The following BLAST results are available for this feature:
BLAST of evm.Ca_v2.0_10344 vs. Araport11
Analysis Date: 2024-07-26 (Blastp of Cicer arietinum cv. CDC Frontier v2.0 proteins vs arabidopsis Araport11)
Total hits: 1
Match NameE-valueIdentityDescription
|5.262e-1550.00Symbols: no symbol available | no full name availa... [more]
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BLAST of evm.Ca_v2.0_10344 vs. ExPASy Swiss-Prot (2024)
Analysis Date: 2024-07-26 (Blastp of Cicer arietinum cv. CDC Frontier v2.0 proteins vs UniProt Swissprot )
Total hits: 1
Match NameE-valueIdentityDescription
sp|Q9SR70|FK164_ARATH5.139e-1450.00Peptidyl-prolyl cis-trans isomerase FKBP16-4, chlo... [more]
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BLAST of evm.Ca_v2.0_10344 vs. ExPASy TrEMBL (2024)
Analysis Date: 2024-07-26 (Blastp of Cicer arietinum cv. CDC Frontier v2.0 proteins vs UniProt TrEMBL)
Total hits: 10
Match NameE-valueIdentityDescription
tr|A0A9D4W488|A0A9D4W488_PEA2.396e-1951.02Uncharacterized protein OS=Pisum sativum OX=3888 G... [more]
tr|A0A1S2Y0V9|A0A1S2Y0V9_CICAR8.070e-1856.47peptidylprolyl isomerase OS=Cicer arietinum OX=382... [more]
tr|A0A2K3NPP4|A0A2K3NPP4_TRIPR8.642e-1855.29peptidylprolyl isomerase OS=Trifolium pratense OX=... [more]
tr|A0A2Z6MCZ6|A0A2Z6MCZ6_TRISU9.381e-1855.29peptidylprolyl isomerase OS=Trifolium subterraneum... [more]
tr|A0A9D4W489|A0A9D4W489_PEA1.128e-1755.29peptidylprolyl isomerase OS=Pisum sativum OX=3888 ... [more]
tr|A0A9D4W605|A0A9D4W605_PEA2.112e-1749.48peptidylprolyl isomerase OS=Pisum sativum OX=3888 ... [more]
tr|I3SW13|I3SW13_MEDTR9.309e-1754.12peptidylprolyl isomerase OS=Medicago truncatula OX... [more]
tr|G7I9E0|G7I9E0_MEDTR9.869e-1754.12peptidylprolyl isomerase OS=Medicago truncatula OX... [more]
tr|A0A8B8M4Q3|A0A8B8M4Q3_ABRPR1.791e-1654.12peptidylprolyl isomerase OS=Abrus precatorius OX=3... [more]
tr|A0A1J7GHB8|A0A1J7GHB8_LUPAN2.121e-1654.12peptidylprolyl isomerase OS=Lupinus angustifolius ... [more]
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Sequences
The following sequences are available for this feature:

mRNA sequence

>drCicArie.Frontier.2.0.Ca_v2.0_10344.1 ID=drCicArie.Frontier.2.0.Ca_v2.0_10344.1; Name=evm.Ca_v2.0_10344; organism=Cicer arietinum; type=mRNA; length=294bp
ATGTTTTTATGTTATGTGATCAGTTGGTGGAATTATACATGTGATGTGGC
CGAAGCTGTTAGCACTAGTAGAAGAGCTGTATGTGTCCCTAGCATGAGAA
CAAATGTTGATTCTGAAAATATGATTACTAATTGGAATTGTGCTTTTCTT
GGTTTTGGTTTTATGCAGCTAAGAAGAGCCAAAACTCCTGAAAGTGATTA
CAAAACTTTGCCAAATGGTCTCAAGTACTGTGATTTGAAGGTTGGGAATG
CTGCTGAAGCTGTGAAAGGATCTCGAGTTGCATTACGGCTGTGA
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protein sequence of drCicArie.Frontier.2.0.Ca_v2.0_10344.1

>drCicArie.Frontier.2.0.Ca_v2.0_10344.1 ID=drCicArie.Frontier.2.0.Ca_v2.0_10344.1; Name=drCicArie.Frontier.2.0.Ca_v2.0_10344.1; organism=Cicer arietinum; type=polypeptide; length=97bp
MFLCYVISWWNYTCDVAEAVSTSRRAVCVPSMRTNVDSENMITNWNCAFL
GFGFMQLRRAKTPESDYKTLPNGLKYCDLKVGNAAEAVKGSRVALRL
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mRNA from alignment at Ca4_v2.0:22758853..22759629+

Legend: CDSexonpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>drCicArie.Frontier.2.0.Ca_v2.0_10344.1 ID=drCicArie.Frontier.2.0.Ca_v2.0_10344.1; Name=evm.Ca_v2.0_10344; organism=Cicer arietinum; type=mRNA; length=777bp; location=Sequence derived from: Ca4_v2.0:22758853..22759629+ (Cicer arietinum
ATGTTTTTATGTTATGTGATCAGTTGGTGGAATTATACATGTGATGTGGC
CGAAGCTGTTAGCACTAGTAGAAGAGCTGTATGTGTCCCTAGCATGAGAA
CAAATGTTGATTCTGAAAATATGATTACTAATTGGAATTGTGCTTTTCTT
GGTTTTGGTTTTATGCAGCTAAGAAGAGCCAAAACTCCTGAAAGTGATTA
CAAAACTTTGCCAAATGGTCTCAAGTAAGTATATGTTGATTACATCTTAA
ATTGCTTCGATTATAGATTTTTGTACCTTCAACTTTGGTAGTTGACTATG
AAGACTAATAAGTTATGAACTACTACTAACACTAACACCTAAACACTGGT
AATAATTTAAAAAAAAAAAAATGATTGAGTATAACTTCAGTGTCTGATAT
TGATACTGGCATATGTCGGACACCATACAAGCCTTCAATATGAAGTGTTG
GTACAACAGTACTAACAAGTAATGACTGATGAACTTAAAAAATGTGTTAA
GCCTTGAAATAGATATGATTACAGAGGAATTGCCTCACCTAGTGGTACAT
TTATTGTAAGTTTCACTCAACCTCGAGAAACAGAATCTATCACTTCTGTT
TGATTGGTAAACAAACTTTCAACCCCTTTTCTTGTTGTTTTTCATTTTTA
AGATATATATACATCTGATTAGGGGGGTAGTGTGTGATCAAACTTTATCA
TGTTCAGGTACTGTGATTTGAAGGTTGGGAATGCTGCTGAAGCTGTGAAA
GGATCTCGAGTTGCATTACGGCTGTGA
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Coding sequence (CDS) from alignment at Ca4_v2.0:22758853..22759629+

>drCicArie.Frontier.2.0.Ca_v2.0_10344.1 ID=drCicArie.Frontier.2.0.Ca_v2.0_10344.1; Name=evm.Ca_v2.0_10344; organism=Cicer arietinum; type=CDS; length=294bp; location=Sequence derived from: Ca4_v2.0:22758853..22759629+ (Cicer arietinum
ATGTTTTTATGTTATGTGATCAGTTGGTGGAATTATACATGTGATGTGGC
CGAAGCTGTTAGCACTAGTAGAAGAGCTGTATGTGTCCCTAGCATGAGAA
CAAATGTTGATTCTGAAAATATGATTACTAATTGGAATTGTGCTTTTCTT
GGTTTTGGTTTTATGCAGCTAAGAAGAGCCAAAACTCCTGAAAGTGATTA
CAAAACTTTGCCAAATGGTCTCAAGTACTGTGATTTGAAGGTTGGGAATG
CTGCTGAAGCTGTGAAAGGATCTCGAGTTGCATTACGGCTGTGA
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