evm.Ca_v2.0_06112

Transcript Overview


Name	evm.Ca_v2.0_06112
Unique Name	drCicArie.Frontier.2.0.Ca_v2.0_06112.1
Type	mRNA
Organism	Cicer arietinum (chickpea)
Sequence length	393

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
Ca3_v2.0	chromosome	Ca3_v2.0:48450348..48451443 -	Cicer arietinum cv. CDC Frontier genome v2.0	n/a

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Cicer arietinum cv. CDC Frontier genome v2.0	2024-06-26
Blastp of Cicer arietinum cv. CDC Frontier v2.0 proteins vs arabidopsis Araport11	2024-07-26
InterProScan Analysis for Cicer arietinum cv. CDC Frontier genome v2.0	2024-07-26
Blastp of Cicer arietinum cv. CDC Frontier v2.0 proteins vs UniProt Swissprot	2024-07-26
Blastp of Cicer arietinum cv. CDC Frontier v2.0 proteins vs UniProt TrEMBL	2024-07-26

Orthologs

Syntenic blocks


Syntentic block	Assembly	Species
carccaR195	Cajanus cajan cv. Asha genome v2.0	Cajanus cajan
carccaR200	Cajanus cajan cv. Asha genome v2.0	Cajanus cajan
carccaR212	Cajanus cajan cv. Asha genome v2.0	Cajanus cajan
carvumR207	Vigna umbellata FF25 genome v1.0	Vigna umbellata
carvvaR183	Vicia villosa cv. AU Merit genome v1.0	Vicia villosa
carvvaR204	Vicia villosa cv. AU Merit genome v1.0	Vicia villosa
carvasR204	Vigna angularis cv. Shumari genome v1.a1	Vigna angularis
carvasR214	Vigna angularis cv. Shumari genome v1.a1	Vigna angularis
carvstR224	Vigna stipulacea acc. JP252948 genome v2.a1	Vigna stipulacea
carvasR266	Vigna angularis cv. Shumari genome v1.a1	Vigna angularis
carvstR278	Vigna stipulacea acc. JP252948 genome v2.a1	Vigna stipulacea
carvunR175	Vigna unguiculata L. Walp IT97K-499-35 genome v1.2	Vigna unguiculata
carvunR180	Vigna unguiculata L. Walp IT97K-499-35 genome v1.2	Vigna unguiculata
carpvfR270	Phaseolus vulgaris cv. Flavert genome v1.0	Phaseolus vulgaris
carpvfR276	Phaseolus vulgaris cv. Flavert genome v1.0	Phaseolus vulgaris

Orthologs


Gene/Transcript	Assembly	Species
XM_058880835.1	Vicia villosa cv. AU Merit genome v1.0	Vicia villosa
Cc_v2.0_16029.1	Cajanus cajan cv. Asha genome v2.0	Cajanus cajan

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
evm.Ca_v2.0_06112	drCicArie.Frontier.2.0.Ca_v2.0_06112	Cicer arietinum	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
drCicArie.Frontier.2.0.cds.Ca_v2.0_06112.1	drCicArie.Frontier.2.0.cds.Ca_v2.0_06112.1	Cicer arietinum	CDS
drCicArie.Frontier.2.0.cds.Ca_v2.0_06112.1	drCicArie.Frontier.2.0.cds.Ca_v2.0_06112.1_2	Cicer arietinum	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
drCicArie.Frontier.2.0.Ca_v2.0_06112.1.exon2	drCicArie.Frontier.2.0.Ca_v2.0_06112.1.exon2	Cicer arietinum	exon
drCicArie.Frontier.2.0.Ca_v2.0_06112.1.exon1	drCicArie.Frontier.2.0.Ca_v2.0_06112.1.exon1	Cicer arietinum	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
drCicArie.Frontier.2.0.Ca_v2.0_06112.1	drCicArie.Frontier.2.0.Ca_v2.0_06112.1	Cicer arietinum	polypeptide
drCicArie.Frontier.2.0.Ca_v2.0_06112.1	drCicArie.Frontier.2.0.Ca_v2.0_06112.1-protein	Cicer arietinum	polypeptide

Homology

[Close]

BLAST of evm.Ca_v2.0_06112 vs. Araport11
Match: | (Symbols: REM39, VRN1 | REPRODUCTIVE MERISTEM 39, REDUCED VERNALIZATION RESPONSE 1 | chr3:6549077-6551568 REVERSE LENGTH=341)

HSP 1 Score: 97.8265 bits (242), Expect = 3.680e-25
Identity = 45/103 (43.69%), Postives = 70/103 (67.96%), Query Frame = 0

Query:    9 KPFHFFKIILNQSLREGKLMIPRKFVEKYGEGLPKTISLKPPNGKEWKLDLIKSDGKIWFGKGWKEFADYHSLAHGHLLVFRYEKAFHFKIHIFDMSGLEINY 111
            +PF F K+I + +++E +L +P KFV K+ + L   ++L  P+G  W++ L K+D KIWF  GW+EF D +S+  G+LL+FRYE    F ++IF++S  EINY
Sbjct:    3 RPF-FHKLIFSSTIQEKRLRVPDKFVSKFKDELSVAVALTVPDGHVWRVGLRKADNKIWFQDGWQEFVDRYSIRIGYLLIFRYEGNSAFSVYIFNLSHSEINY 104

[Close]

BLAST of evm.Ca_v2.0_06112 vs. Araport11
Match: | (Symbols: REM39, VRN1 | REPRODUCTIVE MERISTEM 39, REDUCED VERNALIZATION RESPONSE 1 | chr3:6548552-6551568 REVERSE LENGTH=372)

HSP 1 Score: 97.8265 bits (242), Expect = 5.398e-25
Identity = 46/108 (42.59%), Postives = 72/108 (66.67%), Query Frame = 0

Query:    9 KPFHFFKIILNQSLREGKLMIPRKFVEKYGEGLPKTISLKPPNGKEWKLDLIKSDGKIWFGKGWKEFADYHSLAHGHLLVFRYEKAFHFKIHIFDMSGLEINYPFRGV 116
            +PF F K+I + +++E +L +P KFV K+ + L   ++L  P+G  W++ L K+D KIWF  GW+EF D +S+  G+LL+FRYE    F ++IF++S  EINY   G+
Sbjct:    3 RPF-FHKLIFSSTIQEKRLRVPDKFVSKFKDELSVAVALTVPDGHVWRVGLRKADNKIWFQDGWQEFVDRYSIRIGYLLIFRYEGNSAFSVYIFNLSHSEINYHSTGL 109

[Close]

BLAST of evm.Ca_v2.0_06112 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr4:685791-686668 FORWARD LENGTH=190)

HSP 1 Score: 87.0409 bits (214), Expect = 3.476e-22
Identity = 40/116 (34.48%), Postives = 69/116 (59.48%), Query Frame = 0

Query:   13 FFKIILNQSLREGKLMIPRKFVEKYGEGLPKTISLKPPNGKEWKLDLIKSDGKIWFGKGWKEFADYHSLAHGHLLVFRYEKAFHFKIHIFDMSGLEINYPFRGVEAKRVYNSNGNI 128
            FFK++L  ++++  + IP +FV+  G  L + ++L  P G +  + L +   +IWF +GW EFA+ HS+  GH L+F Y+K   F++ IF+ S  E NYP   V    + +S+ ++
Sbjct:   30 FFKLVLPSTMKDKMMRIPPRFVKLQGSKLSEVVTLVTPAGYKRSIKLKRIGEEIWFHEGWSEFAEAHSIEEGHFLLFEYKKNSSFRVIIFNASACETNYPLDAV---HIIDSDDDV 142

[Close]

BLAST of evm.Ca_v2.0_06112 vs. Araport11
Match: | (Symbols: REM7 | REPRODUCTIVE MERISTEM 7 | chr3:6542618-6543455 FORWARD LENGTH=194)

HSP 1 Score: 83.9593 bits (206), Expect = 5.805e-21
Identity = 37/104 (35.58%), Postives = 64/104 (61.54%), Query Frame = 0

Query:   13 FFKIILNQSLREGKLMIPRKFVEKYGEGLPKTISLKPPNGKEWKLDLIKSDGKIWFGKGWKEFADYHSLAHGHLLVFRYEKAFHFKIHIFDMSGLEINYPFRGV 116
            FFK++L  ++++  + IP +FV+  G  L + ++L+ P G +  + L +   +IWF +GW EFA+ HS+  GH L+F Y++   F++ IF++S  E  YP   V
Sbjct:   30 FFKLVLPSTMKDKMMKIPPRFVKLQGSKLSEVVTLETPAGFKRSIKLKRIGEEIWFHEGWSEFAEAHSIEEGHFLLFEYKENSSFRVIIFNVSACETKYPLDAV 133

[Close]

BLAST of evm.Ca_v2.0_06112 vs. Araport11
Match: | (Symbols: REM7 | REPRODUCTIVE MERISTEM 7 | chr3:6542618-6543568 FORWARD LENGTH=209)

HSP 1 Score: 83.9593 bits (206), Expect = 8.780e-21
Identity = 37/104 (35.58%), Postives = 64/104 (61.54%), Query Frame = 0

Query:   13 FFKIILNQSLREGKLMIPRKFVEKYGEGLPKTISLKPPNGKEWKLDLIKSDGKIWFGKGWKEFADYHSLAHGHLLVFRYEKAFHFKIHIFDMSGLEINYPFRGV 116
            FFK++L  ++++  + IP +FV+  G  L + ++L+ P G +  + L +   +IWF +GW EFA+ HS+  GH L+F Y++   F++ IF++S  E  YP   V
Sbjct:   30 FFKLVLPSTMKDKMMKIPPRFVKLQGSKLSEVVTLETPAGFKRSIKLKRIGEEIWFHEGWSEFAEAHSIEEGHFLLFEYKENSSFRVIIFNVSACETKYPLDAV 133

[Close]

BLAST of evm.Ca_v2.0_06112 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr1:18312983-18313748 FORWARD LENGTH=190)

HSP 1 Score: 82.8037 bits (203), Expect = 1.692e-20
Identity = 41/108 (37.96%), Postives = 62/108 (57.41%), Query Frame = 0

Query:   13 FFKIILNQSLREGKLMIPRKFVEKYGEGLPKTISLKPPNGKEWKLDLIKSDGKIWFGKGWKEFADYHSLAHGHLLVFRYEKAFHFKIHIFDMSGLEINYPFRGVEAKR 120
            F KIIL   + E  + +P +FV ++G  L   ++L+ P G +  + + +   ++WF KGW EFA+ HSL+ GH L F YE    F++ IFD+S  EI YP    +  R
Sbjct:   34 FIKIILLSRIIEKMMKVPARFV-RFGPKLTDNVTLQTPVGFKRSIRIKRIGDEVWFEKGWSEFAEAHSLSDGHFLFFHYEGDSCFRVVIFDVSASEIEYPLDDTDDNR 140

[Close]

BLAST of evm.Ca_v2.0_06112 vs. Araport11
Match: | (Symbols: REM7 | REPRODUCTIVE MERISTEM 7 | chr3:6542982-6543568 FORWARD LENGTH=172)

HSP 1 Score: 72.7886 bits (177), Expect = 7.040e-17
Identity = 33/88 (37.50%), Postives = 53/88 (60.23%), Query Frame = 0

Query:   29 IPRKFVEKYGEGLPKTISLKPPNGKEWKLDLIKSDGKIWFGKGWKEFADYHSLAHGHLLVFRYEKAFHFKIHIFDMSGLEINYPFRGV 116
            IP +FV+  G  L + ++L+ P G +  + L +   +IWF +GW EFA+ HS+  GH L+F Y++   F++ IF++S  E  YP   V
Sbjct:    9 IPPRFVKLQGSKLSEVVTLETPAGFKRSIKLKRIGEEIWFHEGWSEFAEAHSIEEGHFLLFEYKENSSFRVIIFNVSACETKYPLDAV 96

[Close]

BLAST of evm.Ca_v2.0_06112 vs. Araport11
Match: | (Symbols: REM16 | | chr3:19766927-19768368 REVERSE LENGTH=286)

HSP 1 Score: 67.3958 bits (163), Expect = 3.792e-14
Identity = 39/106 (36.79%), Postives = 60/106 (56.60%), Query Frame = 0

Query:    1 MANEISQVKPFHFFKIILNQSLREGKLMIPRKFVEKYGEGLPKTISLKPPNGKEWKLDLIKSDGKIWFGKGWKEFADYHSLAHGHLLVFRYEKAFHFKIHIFDMSG 106
            MA++ S++ P  FFK+ L +S  E  LMIP  F+    + LPKT+ L+   GK W + L K  G  +  +GW +FA+ H L +G  + F Y+    F++ +FD  G
Sbjct:    1 MADD-SELYP-RFFKVFLVESASES-LMIPLPFMAFLADPLPKTVKLQGLGGKLWTVSLKKISGAAYLTRGWPKFAEEHELKNGEFMTFVYDGHRTFEVSVFDRWG 103

[Close]

BLAST of evm.Ca_v2.0_06112 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr4:16048193-16049310 REVERSE LENGTH=285)

HSP 1 Score: 56.9954 bits (136), Expect = 1.967e-10
Identity = 34/100 (34.00%), Postives = 52/100 (52.00%), Query Frame = 0

Query:   12 HFFKIILNQSLREG---KLMIPRKFVEKYGEGLPKTISLKPPNGKEWKLDLIKSDGK-IWFGKGWKEFADYHSLAHGHLLVFRYEKAFHFKIHIFDMSGL 107
            HF  +   Q L  G   +L+IPRKF       LP+ ++LK P+G  + + + + D K + F  GW +F   HSL    LLVF++     F++ +FD   L
Sbjct:   19 HFQTLHFTQLLLPGFHNRLVIPRKFSTHCKRKLPQIVTLKSPSGVTYNVGVEEDDEKTMAFRFGWDKFVKDHSLEENDLLVFKFHGVSEFEVLVFDGQTL 118

[Close]

BLAST of evm.Ca_v2.0_06112 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr4:16047357-16049310 REVERSE LENGTH=337)

HSP 1 Score: 56.9954 bits (136), Expect = 2.286e-10
Identity = 34/100 (34.00%), Postives = 52/100 (52.00%), Query Frame = 0

Query:   12 HFFKIILNQSLREG---KLMIPRKFVEKYGEGLPKTISLKPPNGKEWKLDLIKSDGK-IWFGKGWKEFADYHSLAHGHLLVFRYEKAFHFKIHIFDMSGL 107
            HF  +   Q L  G   +L+IPRKF       LP+ ++LK P+G  + + + + D K + F  GW +F   HSL    LLVF++     F++ +FD   L
Sbjct:   19 HFQTLHFTQLLLPGFHNRLVIPRKFSTHCKRKLPQIVTLKSPSGVTYNVGVEEDDEKTMAFRFGWDKFVKDHSLEENDLLVFKFHGVSEFEVLVFDGQTL 118

[Close]

BLAST of evm.Ca_v2.0_06112 vs. ExPASy Swiss-Prot (2024)
Match: sp|Q8L3W1|VRN1_ARATH (B3 domain-containing transcription factor VRN1 OS=Arabidopsis thaliana OX=3702 GN=VRN1 PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 3.595e-24
Identity = 45/103 (43.69%), Postives = 70/103 (67.96%), Query Frame = 0

Query:    9 KPFHFFKIILNQSLREGKLMIPRKFVEKYGEGLPKTISLKPPNGKEWKLDLIKSDGKIWFGKGWKEFADYHSLAHGHLLVFRYEKAFHFKIHIFDMSGLEINY 111
            +PF F K+I + +++E +L +P KFV K+ + L   ++L  P+G  W++ L K+D KIWF  GW+EF D +S+  G+LL+FRYE    F ++IF++S  EINY
Sbjct:    3 RPF-FHKLIFSSTIQEKRLRVPDKFVSKFKDELSVAVALTVPDGHVWRVGLRKADNKIWFQDGWQEFVDRYSIRIGYLLIFRYEGNSAFSVYIFNLSHSEINY 104

[Close]

BLAST of evm.Ca_v2.0_06112 vs. ExPASy Swiss-Prot (2024)
Match: sp|Q9ZSH7|Y4158_ARATH (B3 domain-containing protein At4g01580 OS=Arabidopsis thaliana OX=3702 GN=At4g01580 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.363e-21
Identity = 40/116 (34.48%), Postives = 69/116 (59.48%), Query Frame = 0

Query:   13 FFKIILNQSLREGKLMIPRKFVEKYGEGLPKTISLKPPNGKEWKLDLIKSDGKIWFGKGWKEFADYHSLAHGHLLVFRYEKAFHFKIHIFDMSGLEINYPFRGVEAKRVYNSNGNI 128
            FFK++L  ++++  + IP +FV+  G  L + ++L  P G +  + L +   +IWF +GW EFA+ HS+  GH L+F Y+K   F++ IF+ S  E NYP   V    + +S+ ++
Sbjct:   30 FFKLVLPSTMKDKMMRIPPRFVKLQGSKLSEVVTLVTPAGYKRSIKLKRIGEEIWFHEGWSEFAEAHSIEEGHFLLFEYKKNSSFRVIIFNASACETNYPLDAV---HIIDSDDDV 142

[Close]

BLAST of evm.Ca_v2.0_06112 vs. ExPASy Swiss-Prot (2024)
Match: sp|Q84R27|Y3896_ARATH (B3 domain-containing protein At3g18960 OS=Arabidopsis thaliana OX=3702 GN=At3g18960 PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.516e-20
Identity = 37/104 (35.58%), Postives = 64/104 (61.54%), Query Frame = 0

Query:   13 FFKIILNQSLREGKLMIPRKFVEKYGEGLPKTISLKPPNGKEWKLDLIKSDGKIWFGKGWKEFADYHSLAHGHLLVFRYEKAFHFKIHIFDMSGLEINYPFRGV 116
            FFK++L  ++++  + IP +FV+  G  L + ++L+ P G +  + L +   +IWF +GW EFA+ HS+  GH L+F Y++   F++ IF++S  E  YP   V
Sbjct:   30 FFKLVLPSTMKDKMMKIPPRFVKLQGSKLSEVVTLETPAGFKRSIKLKRIGEEIWFHEGWSEFAEAHSIEEGHFLLFEYKENSSFRVIIFNVSACETKYPLDAV 133

[Close]

BLAST of evm.Ca_v2.0_06112 vs. ExPASy Swiss-Prot (2024)
Match: sp|Q9XIB4|Y1475_ARATH (B3 domain-containing protein At1g49475 OS=Arabidopsis thaliana OX=3702 GN=At1g49475 PE=2 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 1.638e-19
Identity = 41/108 (37.96%), Postives = 62/108 (57.41%), Query Frame = 0

Query:   13 FFKIILNQSLREGKLMIPRKFVEKYGEGLPKTISLKPPNGKEWKLDLIKSDGKIWFGKGWKEFADYHSLAHGHLLVFRYEKAFHFKIHIFDMSGLEINYPFRGVEAKR 120
            F KIIL   + E  + +P +FV ++G  L   ++L+ P G +  + + +   ++WF KGW EFA+ HSL+ GH L F YE    F++ IFD+S  EI YP    +  R
Sbjct:   34 FIKIILLSRIIEKMMKVPARFV-RFGPKLTDNVTLQTPVGFKRSIRIKRIGDEVWFEKGWSEFAEAHSLSDGHFLFFHYEGDSCFRVVIFDVSASEIEYPLDDTDDNR 140

[Close]

BLAST of evm.Ca_v2.0_06112 vs. ExPASy Swiss-Prot (2024)
Match: sp|Q7XS75|Y4469_ORYSJ (Putative B3 domain-containing protein Os04g0346900 OS=Oryza sativa subsp. japonica OX=39947 GN=Os04g0346900 PE=3 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 6.077e-14
Identity = 34/104 (32.69%), Postives = 58/104 (55.77%), Query Frame = 0

Query:   26 KLMIPRKFVEKY--GEGLPKTISL-KPPNGKEWKLDLIKSDGKIWFGKGWKEFADYHSLAHGHLLVFRYEKAFHFKIHIFDMSGLEINYPFRGVEAKRVYNSNG 126
            K+ IP KFV  Y  GE L   +++   P GK W+++L K    ++ G GW +F  +H ++ G +++FRYE    FKI +F  +G + ++  +G+    +Y   G
Sbjct:  154 KMRIPDKFVRDYITGENLNSNMAIILSPLGKSWRVELDKDQSGVFLGGGWLQFLSFHGISRGDVVIFRYEGNLVFKISVFGPNGRQKDFKAKGIS---IYQGTG 254

[Close]

BLAST of evm.Ca_v2.0_06112 vs. ExPASy Swiss-Prot (2024)
Match: sp|Q10Q26|Y3123_ORYSJ (B3 domain-containing protein Os03g0212300 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0212300 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.451e-13
Identity = 40/115 (34.78%), Postives = 61/115 (53.04%), Query Frame = 0

Query:    1 MANEISQVKPFHFFKIILNQSLREGKLMIPRKFVEKYGEGLPKTISLKPPN--GKEWKLDLIKSD--GKIWFGKGWKEFADYHSLAHGHLLVFRYEKAFHFKIHIFDMSGLEINY 111
            MAN   ++  F FF+IIL  S +  KL +P KF  + G+   +   L+      + W + +   D  G ++ G+GW+EFA  H L  GH LVFRY+ A  F + +FD +    +Y
Sbjct:    5 MAN--LRLTDFEFFRIILPGSSKT-KLKLPYKFARELGDRELREARLRVAGEGRRPWDVKVFDDDVSGDVYLGRGWQEFARAHDLRDGHFLVFRYDGAAAFTVTVFDETMCRRDY 116

[Close]

BLAST of evm.Ca_v2.0_06112 vs. ExPASy Swiss-Prot (2024)
Match: sp|Q851V5|Y3216_ORYSJ (Putative B3 domain-containing protein Os03g0621600 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0621600 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.139e-13
Identity = 36/96 (37.50%), Postives = 52/96 (54.17%), Query Frame = 0

Query:   12 HFFKIILNQSLREGKLMIPRKFVEKYGEGLPKTISLKPPNGKEWKLDLIKSDGKIWFGKGWKEFADYHSLAHGHLLVFRYEKAFHFKIHIFDMSGL 107
            +FFK+++    R+  + IP KF E + + +  TI LK  NG    + + K   K+   KGW EFA+ H +  G  LVFRY     F++ IFD SG 
Sbjct:  149 YFFKVMIGGFRRQ--MTIPYKFAENFRDQIQGTIKLKARNGNTCSVLVDKCSNKLVLTKGWAEFANSHDIKMGDFLVFRYTGNSQFEVKIFDPSGC 242

HSP 2 Score: 63.1586 bits (152), Expect = 2.475e-11
Identity = 34/97 (35.05%), Postives = 56/97 (57.73%), Query Frame = 0

Query:   12 HFFKIILNQSLREGKLMIPRKFVEKYGEGLPKTISLKPPNGKEWKLDLIKSDGKIWFGKGWKEFADYHSLAHGHLLVFRYEKAFHFKIHIFDMSGLE 108
            +FFK+++ +  RE +++IP +F++ +   +P+TI L+  +G  + + + K+ GKI    GWK F   H L  G  LVF Y+     K+ IF  SG E
Sbjct:  733 NFFKVMIGR-FRE-RMIIPNEFLQYFRGKIPRTIKLQLRDGCTYDVQVTKNLGKISLQSGWKAFVTAHDLQMGDFLVFSYDGISKLKVLIFGPSGCE 827

HSP 3 Score: 60.4622 bits (145), Expect = 1.871e-10
Identity = 32/97 (32.99%), Postives = 52/97 (53.61%), Query Frame = 0

Query:   12 HFFKIILNQSLREGKLMIPRKFVEKYGEGLPKTISLKPPNGKEWKLDLIKSDGKIWFGKGWKEFADYHSLAHGHLLVFRYEKAFHFKIHIFDMSGLE 108
            +FFK+++    +  ++ IP KF   +   + KTI L+P +G  + + + K    +  G GW+ F + H L  G  LVF+Y   F  ++ IFD SG E
Sbjct:  452 YFFKVMIGDFHK--RMTIPDKFARHFKGVISKTIKLEPRSGYTFDVQVTKKLNILVLGSGWESFVNAHDLNMGDFLVFKYNGDFLLQVLIFDPSGCE 546

[Close]

BLAST of evm.Ca_v2.0_06112 vs. ExPASy Swiss-Prot (2024)
Match: sp|Q8LAV5|REM20_ARATH (B3 domain-containing protein REM20 OS=Arabidopsis thaliana OX=3702 GN=REM20 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 3.723e-13
Identity = 39/106 (36.79%), Postives = 60/106 (56.60%), Query Frame = 0

Query:    1 MANEISQVKPFHFFKIILNQSLREGKLMIPRKFVEKYGEGLPKTISLKPPNGKEWKLDLIKSDGKIWFGKGWKEFADYHSLAHGHLLVFRYEKAFHFKIHIFDMSG 106
            MA++ S++ P  FFK+ L +S  E  LMIP  F+    + LPKT+ L+   GK W + L K  G  +  +GW +FA+ H L +G  + F Y+    F++ +FD  G
Sbjct:    1 MADD-SELYP-RFFKVFLVESASES-LMIPLPFMAFLADPLPKTVKLQGLGGKLWTVSLKKISGAAYLTRGWPKFAEEHELKNGEFMTFVYDGHRTFEVSVFDRWG 103

[Close]

BLAST of evm.Ca_v2.0_06112 vs. ExPASy Swiss-Prot (2024)
Match: sp|Q10GM4|Y3221_ORYSJ (B3 domain-containing protein Os03g0622100 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0622100 PE=2 SV=1)

HSP 1 Score: 63.1586 bits (152), Expect = 1.617e-11
Identity = 29/87 (33.33%), Postives = 47/87 (54.02%), Query Frame = 0

Query:   27 LMIPRKFVEKYGEGLPKTISLKPPNGKEWKLDLIKSD-GKIWFGKGWKEFADYHSLAHGHLLVFRYEKAFHFKIHIFDMSGLEINYP 112
            +++P +F   +   + + ++LK P+GK W + +  SD G++    GWKEF D + +     L+FRY     F + IFD SG E   P
Sbjct:   44 MIVPSRFANNFNGHISEVVNLKSPSGKTWSIGVAYSDTGELVLRSGWKEFVDANGVQENDCLLFRYSGVSSFDVLIFDPSGCEKASP 130

[Close]

BLAST of evm.Ca_v2.0_06112 vs. ExPASy Swiss-Prot (2024)
Match: sp|Q10GM3|Y3222_ORYSJ (B3 domain-containing protein Os03g0622200 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0622200 PE=2 SV=1)

HSP 1 Score: 59.6918 bits (143), Expect = 3.072e-10
Identity = 31/103 (30.10%), Postives = 53/103 (51.46%), Query Frame = 0

Query:   12 HFFKIILNQSLREGKLMIPRKFVEKYGEGLPKTISLKPPNGKEWKLDLIKSD-GKIWFGKGWKEFADYHSLAHGHLLVFRYEK-AFHFKIHIFDMSGLEINYP 112
            HF K ++        + +P +F   +   + + ++L+ P+G+ W + +  SD G++    GWKEF D + +  G  L+FRY   +  F + IFD SG E   P
Sbjct:   31 HFLKHMVGDFTE--SMTVPARFANNFNGHISEEVNLRSPSGETWSIGVANSDAGELVLQPGWKEFVDGNGIEEGDCLLFRYSGVSSSFDVLIFDPSGCEKASP 131

[Close]

BLAST of evm.Ca_v2.0_06112 vs. ExPASy TrEMBL (2024)
Match: tr|G7J3B6|G7J3B6_MEDTR (Plant-specific B3-DNA-binding domain protein OS=Medicago truncatula OX=3880 GN=MTR_3g098790 PE=4 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 2.350e-58
Identity = 89/126 (70.63%), Postives = 102/126 (80.95%), Query Frame = 0

Query:    1 MANEISQVKPFHFFKIILNQSLREGKLMIPRKFVEKYGEGLPKTISLKPPNGKEWKLDLIKSDGKIWFGKGWKEFADYHSLAHGHLLVFRYEKAFHFKIHIFDMSGLEINYPFRGVEAKRVYNSNG 126
            MAN+I + KP HFFKIIL Q+L  GKLM+PRKFVEKYGE LPKTI +K PNG  WKL+L+KSDGKIWF KGWKEFA+YHSLAHGHLL+F+YE+   F +HIFD S LEINYP   VE KRV+N  G
Sbjct:    1 MANKIPRAKPVHFFKIILTQNLHHGKLMMPRKFVEKYGECLPKTICVKTPNGVNWKLNLVKSDGKIWFQKGWKEFAEYHSLAHGHLLLFKYERTSLFHVHIFDKSALEINYPLTRVEDKRVFNCQG 126

[Close]

BLAST of evm.Ca_v2.0_06112 vs. ExPASy TrEMBL (2024)
Match: tr|A0A396J148|A0A396J148_MEDTR (Putative transcription factor B3-Domain family OS=Medicago truncatula OX=3880 GN=MtrunA17_Chr3g0131891 PE=4 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 2.484e-58
Identity = 89/126 (70.63%), Postives = 102/126 (80.95%), Query Frame = 0

Query:    1 MANEISQVKPFHFFKIILNQSLREGKLMIPRKFVEKYGEGLPKTISLKPPNGKEWKLDLIKSDGKIWFGKGWKEFADYHSLAHGHLLVFRYEKAFHFKIHIFDMSGLEINYPFRGVEAKRVYNSNG 126
            MAN+I + KP HFFKIIL Q+L  GKLM+PRKFVEKYGE LPKTI +K PNG  WKL+L+KSDGKIWF KGWKEFA+YHSLAHGHLL+F+YE+   F +HIFD S LEINYP   VE KRV+N  G
Sbjct:    7 MANKIPRAKPVHFFKIILTQNLHHGKLMMPRKFVEKYGECLPKTICVKTPNGVNWKLNLVKSDGKIWFQKGWKEFAEYHSLAHGHLLLFKYERTSLFHVHIFDKSALEINYPLTRVEDKRVFNCQG 132

[Close]

BLAST of evm.Ca_v2.0_06112 vs. ExPASy TrEMBL (2024)
Match: tr|G7KVV6|G7KVV6_MEDTR (Plant-specific B3-DNA-binding domain protein OS=Medicago truncatula OX=3880 GN=MTR_7g050580 PE=4 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 4.796e-57
Identity = 87/129 (67.44%), Postives = 106/129 (82.17%), Query Frame = 0

Query:    1 MANEISQVKPFHFFKIILNQSLREGKLMIPRKFVEKYGEGLPKTISLKPPNGKEWKLDLIKSDGKIWFGKGWKEFADYHSLAHGHLLVFRYEKAFHFKIHIFDMSGLEINYPFRGVEAKRVYNSNGNIS 129
            MA+EI +V+P HFFKIIL Q+L EGKLM+PRKFVEKYG+ LPK   LK PNG +WKL+L+KSDGKIWF KGWK+FA++HSLAHGHLL+FRYEK  +F++HIF+ S LE NYP + VEAK + N  GN S
Sbjct:    1 MASEIPEVRPTHFFKIILAQNLHEGKLMMPRKFVEKYGKSLPKETCLKTPNGGKWKLNLVKSDGKIWFEKGWKQFAEHHSLAHGHLLLFRYEKTSNFEVHIFEKSALETNYPSKRVEAKTISNDQGNES 129

[Close]

BLAST of evm.Ca_v2.0_06112 vs. ExPASy TrEMBL (2024)
Match: tr|G7KVW6|G7KVW6_MEDTR (Plant-specific B3-DNA-binding domain protein OS=Medicago truncatula OX=3880 GN=MTR_7g050710 PE=4 SV=2)

HSP 1 Score: 178.718 bits (452), Expect = 7.447e-53
Identity = 80/127 (62.99%), Postives = 102/127 (80.31%), Query Frame = 0

Query:    1 MANEISQVKPFHFFKIILNQSLREGKLMIPRKFVEKYGEGLPKTISLKPPNGKEWKLDLIKSDGKIWFGKGWKEFADYHSLAHGHLLVFRYEKAFHFKIHIFDMSGLEINYPFRGVEAKRVYNSNGN 127
            MA+EI++VKP  FFKIIL Q+L +G L +PRKFVEKYG+GLPK I LK PNG +W+L+L+KSDGKIWF KGWK+FA++HS+ HGHLL+FRYEK   F++ IF  S LEI+Y F+ VE+K+  N  GN
Sbjct:    1 MASEIAEVKPIQFFKIILAQNLLQGNLRMPRKFVEKYGKGLPKAICLKTPNGAKWRLNLVKSDGKIWFEKGWKQFAEHHSIGHGHLLLFRYEKTSKFEVQIFGKSALEIDYSFKRVESKKFSNGQGN 127

[Close]

BLAST of evm.Ca_v2.0_06112 vs. ExPASy TrEMBL (2024)
Match: tr|Q2HSK0|Q2HSK0_MEDTR (Putative transcription factor B3-Domain family OS=Medicago truncatula OX=3880 GN=MtrDRAFT_AC151521g52v2 PE=4 SV=2)

HSP 1 Score: 179.104 bits (453), Expect = 7.707e-53
Identity = 80/127 (62.99%), Postives = 102/127 (80.31%), Query Frame = 0

Query:    1 MANEISQVKPFHFFKIILNQSLREGKLMIPRKFVEKYGEGLPKTISLKPPNGKEWKLDLIKSDGKIWFGKGWKEFADYHSLAHGHLLVFRYEKAFHFKIHIFDMSGLEINYPFRGVEAKRVYNSNGN 127
            MA+EI++VKP  FFKIIL Q+L +G L +PRKFVEKYG+GLPK I LK PNG +W+L+L+KSDGKIWF KGWK+FA++HS+ HGHLL+FRYEK   F++ IF  S LEI+Y F+ VE+K+  N  GN
Sbjct:    6 MASEIAEVKPIQFFKIILAQNLLQGNLRMPRKFVEKYGKGLPKAICLKTPNGAKWRLNLVKSDGKIWFEKGWKQFAEHHSIGHGHLLLFRYEKTSKFEVQIFGKSALEIDYSFKRVESKKFSNGQGN 132

[Close]

BLAST of evm.Ca_v2.0_06112 vs. ExPASy TrEMBL (2024)
Match: tr|I1ML85|I1ML85_SOYBN (TF-B3 domain-containing protein OS=Glycine max OX=3847 GN=100793469 PE=4 SV=2)

HSP 1 Score: 177.563 bits (449), Expect = 1.596e-52
Identity = 83/121 (68.60%), Postives = 94/121 (77.69%), Query Frame = 0

Query:    7 QVKPFHFFKIILNQSLREGKLMIPRKFVEKYGEGLPKTISLKPPNGKEWKLDLIKSDGKIWFGKGWKEFADYHSLAHGHLLVFRYEKAFHFKIHIFDMSGLEINYPFRGVEAKRVYNSNGN 127
            QVKPFHFFKII  Q+L++GKLMIP KFVEKYGEGLP  + LK PNG EW  +L K DGKIWF KGWKEFA+YHSLAHGHLLVFR     HF++HIFD+S LEI+YP +G E K   N  GN
Sbjct:   11 QVKPFHFFKIITAQNLQDGKLMIPNKFVEKYGEGLPNALFLKTPNGTEWNFNLEKHDGKIWFQKGWKEFAEYHSLAHGHLLVFRRHGTSHFQVHIFDLSSLEIDYPSKGTEGKTSPNHEGN 131

[Close]

BLAST of evm.Ca_v2.0_06112 vs. ExPASy TrEMBL (2024)
Match: tr|A0A445GEK6|A0A445GEK6_GLYSO (B3 domain-containing transcription factor VRN1 OS=Glycine soja OX=3848 GN=D0Y65_042709 PE=4 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 2.533e-52
Identity = 83/124 (66.94%), Postives = 96/124 (77.42%), Query Frame = 0

Query:    4 EISQVKPFHFFKIILNQSLREGKLMIPRKFVEKYGEGLPKTISLKPPNGKEWKLDLIKSDGKIWFGKGWKEFADYHSLAHGHLLVFRYEKAFHFKIHIFDMSGLEINYPFRGVEAKRVYNSNGN 127
            ++ QVKPFHFFKII  Q+L++GKLMIP KFVEKYGEGLP  + LK PNG EW  +L K DGKIWF KGWKEFA+YHSLAHGHLLVFR     HF++HIFD+S LEI+YP +G E K   N  GN
Sbjct:   94 QLHQVKPFHFFKIITTQNLQDGKLMIPNKFVEKYGEGLPNALFLKTPNGTEWNFNLEKHDGKIWFQKGWKEFAEYHSLAHGHLLVFRRHGTSHFQVHIFDLSSLEIDYPSKGTEGKTSPNHEGN 217

[Close]

BLAST of evm.Ca_v2.0_06112 vs. ExPASy TrEMBL (2024)
Match: tr|A2Q2N6|A2Q2N6_MEDTR (Putative transcription factor B3-Domain family OS=Medicago truncatula OX=3880 GN=MtrDRAFT_AC151521g48v2 PE=4 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 3.319e-52
Identity = 84/127 (66.14%), Postives = 97/127 (76.38%), Query Frame = 0

Query:    1 MANEISQVKPFHFFKIILNQSLREGKLMIPRKFVEKYGEGLPKTISLKPPNGKEWKLDLIKSDGKIWFGKGWKEFADYHSLAHGHLLVFRYEKAFHFKIHIFDMSGLEINYPFRGVEAKRVYNSNGN 127
            MANE     P HFFKII +QSL +GKL+IPRKFVEKYGEGL   I LK PNG +WKL+L+KSDGKIWF KGWKEF  YHSL+ GHLL+F+Y +  HF +HIFD S LEI YP + VE+KRV N  GN
Sbjct:    1 MANEFP---PTHFFKIICDQSLHQGKLIIPRKFVEKYGEGLSNAIYLKTPNGAKWKLNLVKSDGKIWFEKGWKEFVKYHSLSQGHLLLFKYGRTSHFHVHIFDKSALEIKYPSQRVESKRVSNDLGN 124

[Close]

BLAST of evm.Ca_v2.0_06112 vs. ExPASy TrEMBL (2024)
Match: tr|A0A0R0FLL2|A0A0R0FLL2_SOYBN (TF-B3 domain-containing protein OS=Glycine max OX=3847 GN=100793469 PE=4 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 4.207e-52
Identity = 83/121 (68.60%), Postives = 94/121 (77.69%), Query Frame = 0

Query:    7 QVKPFHFFKIILNQSLREGKLMIPRKFVEKYGEGLPKTISLKPPNGKEWKLDLIKSDGKIWFGKGWKEFADYHSLAHGHLLVFRYEKAFHFKIHIFDMSGLEINYPFRGVEAKRVYNSNGN 127
            QVKPFHFFKII  Q+L++GKLMIP KFVEKYGEGLP  + LK PNG EW  +L K DGKIWF KGWKEFA+YHSLAHGHLLVFR     HF++HIFD+S LEI+YP +G E K   N  GN
Sbjct:   11 QVKPFHFFKIITAQNLQDGKLMIPNKFVEKYGEGLPNALFLKTPNGTEWNFNLEKHDGKIWFQKGWKEFAEYHSLAHGHLLVFRRHGTSHFQVHIFDLSSLEIDYPSKGTEGKTSPNHEGN 131

[Close]

BLAST of evm.Ca_v2.0_06112 vs. ExPASy TrEMBL (2024)
Match: tr|A0A9D4Y4E2|A0A9D4Y4E2_PEA (TF-B3 domain-containing protein OS=Pisum sativum OX=3888 GN=KIW84_034808 PE=4 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.742e-51
Identity = 84/130 (64.62%), Postives = 103/130 (79.23%), Query Frame = 0

Query:    1 MANEISQVKPFHFFKIILNQSLREGKLMIPRKFVEKYGEGLPKTISLKPPNGKEWKLDLIKSDGKIWFGKGWKEFADYHSLAHGHLLVFRYEKAFHFKIHIFDMSGLEINYPFRGVEAKRVYNSNGNISK 130
            MANEI+   PFHFFKII+++SL +GKLMIP KFV KYGEGLP  I L  PNG  WK++L+K+DGKIWF KGWKEF +Y+SL+HGHLLVF+YEK  HF++ IFD S LEINYP + VE ++V  SN + SK
Sbjct:    1 MANEIA---PFHFFKIIVSESLNQGKLMIPVKFVNKYGEGLPTAIYLNTPNGAVWKINLVKNDGKIWFEKGWKEFEEYYSLSHGHLLVFKYEKTCHFEVQIFDKSALEINYPSKSVETEKVL-SNEDDSK 126

The following BLAST results are available for this feature:

BLAST of evm.Ca_v2.0_06112 vs. Araport11
BLAST of evm.Ca_v2.0_06112 vs. ExPASy Swiss-Prot (2024)
BLAST of evm.Ca_v2.0_06112 vs. ExPASy TrEMBL (2024)

BLAST of evm.Ca_v2.0_06112 vs. Araport11
Analysis Date: 2024-07-26 (Blastp of Cicer arietinum cv. CDC Frontier v2.0 proteins vs arabidopsis Araport11)
Total hits: 10


Match Name	E-value	Identity	Description
\|	3.680e-25	43.69	Symbols: REM39, VRN1 \| REPRODUCTIVE MERISTEM 39, R...	[more]
\|	5.398e-25	42.59	Symbols: REM39, VRN1 \| REPRODUCTIVE MERISTEM 39, R...	[more]
\|	3.476e-22	34.48	Symbols: no symbol available \| no full name availa...	[more]
\|	5.805e-21	35.58	Symbols: REM7 \| REPRODUCTIVE MERISTEM 7 \| chr3:654...	[more]
\|	8.780e-21	35.58	Symbols: REM7 \| REPRODUCTIVE MERISTEM 7 \| chr3:654...	[more]
\|	1.692e-20	37.96	Symbols: no symbol available \| no full name availa...	[more]
\|	7.040e-17	37.50	Symbols: REM7 \| REPRODUCTIVE MERISTEM 7 \| chr3:654...	[more]
\|	3.792e-14	36.79	Symbols: REM16 \| \| chr3:19766927-19768368 REVERSE...	[more]
\|	1.967e-10	34.00	Symbols: no symbol available \| no full name availa...	[more]
\|	2.286e-10	34.00	Symbols: no symbol available \| no full name availa...	[more]

BLAST of evm.Ca_v2.0_06112 vs. ExPASy Swiss-Prot (2024)
Analysis Date: 2024-07-26 (Blastp of Cicer arietinum cv. CDC Frontier v2.0 proteins vs UniProt Swissprot )
Total hits: 10


Match Name	E-value	Identity	Description
sp\|Q8L3W1\|VRN1_ARATH	3.595e-24	43.69	B3 domain-containing transcription factor VRN1 OS=...	[more]
sp\|Q9ZSH7\|Y4158_ARATH	3.363e-21	34.48	B3 domain-containing protein At4g01580 OS=Arabidop...	[more]
sp\|Q84R27\|Y3896_ARATH	8.516e-20	35.58	B3 domain-containing protein At3g18960 OS=Arabidop...	[more]
sp\|Q9XIB4\|Y1475_ARATH	1.638e-19	37.96	B3 domain-containing protein At1g49475 OS=Arabidop...	[more]
sp\|Q7XS75\|Y4469_ORYSJ	6.077e-14	32.69	Putative B3 domain-containing protein Os04g0346900...	[more]
sp\|Q10Q26\|Y3123_ORYSJ	1.451e-13	34.78	B3 domain-containing protein Os03g0212300 OS=Oryza...	[more]
sp\|Q851V5\|Y3216_ORYSJ	3.139e-13	37.50	Putative B3 domain-containing protein Os03g0621600...	[more]
sp\|Q8LAV5\|REM20_ARATH	3.723e-13	36.79	B3 domain-containing protein REM20 OS=Arabidopsis ...	[more]
sp\|Q10GM4\|Y3221_ORYSJ	1.617e-11	33.33	B3 domain-containing protein Os03g0622100 OS=Oryza...	[more]
sp\|Q10GM3\|Y3222_ORYSJ	3.072e-10	30.10	B3 domain-containing protein Os03g0622200 OS=Oryza...	[more]

BLAST of evm.Ca_v2.0_06112 vs. ExPASy TrEMBL (2024)
Analysis Date: 2024-07-26 (Blastp of Cicer arietinum cv. CDC Frontier v2.0 proteins vs UniProt TrEMBL)
Total hits: 10


Match Name	E-value	Identity	Description
tr\|G7J3B6\|G7J3B6_MEDTR	2.350e-58	70.63	Plant-specific B3-DNA-binding domain protein OS=Me...	[more]
tr\|A0A396J148\|A0A396J148_MEDTR	2.484e-58	70.63	Putative transcription factor B3-Domain family OS=...	[more]
tr\|G7KVV6\|G7KVV6_MEDTR	4.796e-57	67.44	Plant-specific B3-DNA-binding domain protein OS=Me...	[more]
tr\|G7KVW6\|G7KVW6_MEDTR	7.447e-53	62.99	Plant-specific B3-DNA-binding domain protein OS=Me...	[more]
tr\|Q2HSK0\|Q2HSK0_MEDTR	7.707e-53	62.99	Putative transcription factor B3-Domain family OS=...	[more]
tr\|I1ML85\|I1ML85_SOYBN	1.596e-52	68.60	TF-B3 domain-containing protein OS=Glycine max OX=...	[more]
tr\|A0A445GEK6\|A0A445GEK6_GLYSO	2.533e-52	66.94	B3 domain-containing transcription factor VRN1 OS=...	[more]
tr\|A2Q2N6\|A2Q2N6_MEDTR	3.319e-52	66.14	Putative transcription factor B3-Domain family OS=...	[more]
tr\|A0A0R0FLL2\|A0A0R0FLL2_SOYBN	4.207e-52	68.60	TF-B3 domain-containing protein OS=Glycine max OX=...	[more]
tr\|A0A9D4Y4E2\|A0A9D4Y4E2_PEA	1.742e-51	64.62	TF-B3 domain-containing protein OS=Pisum sativum O...	[more]

InterPro

Analysis Name: InterProScan Analysis for Cicer arietinum cv. CDC Frontier genome v2.0
Date Performed: 2024-07-26


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003340	B3 DNA binding domain	PFAM	PF02362	B3	coord: 13..103 e-value: 9.1E-17 score: 72.2
IPR003340	B3 DNA binding domain	PROSITE	PS50863	B3	coord: 12..105 score: 14.747998
IPR003340	B3 DNA binding domain	CDD	cd10017	B3_DNA	coord: 11..103 e-value: 7.88356E-21 score: 78.9089
IPR015300	DNA-binding pseudobarrel domain superfamily	GENE3D	2.40.330.10		coord: 4..106 e-value: 3.9E-29 score: 102.6
IPR015300	DNA-binding pseudobarrel domain superfamily	SUPERFAMILY	101936	DNA-binding pseudobarrel domain	coord: 7..105
IPR050655	Plant B3 domain-containing	PANTHER	PTHR31920	B3 DOMAIN-CONTAINING	coord: 7..110

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at Ca3_v2.0:48450348..48451443-
coding sequence from alignment at Ca3_v2.0:48450348..48451443-

mRNA sequence

>drCicArie.Frontier.2.0.Ca_v2.0_06112.1 ID=drCicArie.Frontier.2.0.Ca_v2.0_06112.1; Name=evm.Ca_v2.0_06112; organism=Cicer arietinum; type=mRNA; length=393bp
ATGGCTAATGAAATTTCTCAAGTGAAACCATTCCACTTTTTCAAGATCAT
ACTTAATCAAAGCCTTCGTGAAGGAAAGCTTATGATTCCAAGAAAGTTTG
TGGAGAAATATGGAGAAGGTTTACCAAAAACAATATCTCTCAAGCCTCCA
AATGGTAAAGAGTGGAAATTAGATTTGATAAAAAGTGATGGTAAAATATG
GTTTGGAAAGGGTTGGAAAGAATTTGCAGACTATCATTCTCTGGCTCATG
GCCATCTTCTGGTTTTCAGATATGAAAAAGCTTTTCATTTTAAGATACAC
ATATTTGATATGAGTGGCTTAGAGATAAACTATCCTTTCAGAGGAGTAGA
AGCTAAAAGGGTCTACAATAGTAACGGAAATATCTCCAAATAA

protein sequence of drCicArie.Frontier.2.0.Ca_v2.0_06112.1

>drCicArie.Frontier.2.0.Ca_v2.0_06112.1 ID=drCicArie.Frontier.2.0.Ca_v2.0_06112.1; Name=drCicArie.Frontier.2.0.Ca_v2.0_06112.1; organism=Cicer arietinum; type=polypeptide; length=130bp
MANEISQVKPFHFFKIILNQSLREGKLMIPRKFVEKYGEGLPKTISLKPP
NGKEWKLDLIKSDGKIWFGKGWKEFADYHSLAHGHLLVFRYEKAFHFKIH
IFDMSGLEINYPFRGVEAKRVYNSNGNISK

mRNA from alignment at Ca3_v2.0:48450348..48451443-

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

>drCicArie.Frontier.2.0.Ca_v2.0_06112.1 ID=drCicArie.Frontier.2.0.Ca_v2.0_06112.1; Name=evm.Ca_v2.0_06112; organism=Cicer arietinum; type=mRNA; length=1096bp; location=Sequence derived from: Ca3_v2.0:48450348..48451443- (Cicer arietinum
ATGGCTAATGAAATTTCTCAAGTGAAACCATTCCACTTTTTCAAGATCAT
ACTTAATCAAAGCCTTCGTGAAGGAAAGCTTGTAAGCCTATACATTCTTC
GTTGATATTCTAGTTTATTTATGATTCCGACTGTTTGTTTATTAGGTCAC
AAGATTGGTTTTTCATAGTTTACATTACCTTCATGGTTAACATGACCATT
TTCTCACAATTTCTTTCTTATTTTTTAAAACAGCAAGTAATTATAGTATA
AATGTCATCTACCAGAGTTTATTACTCTAACTAGCTCTGTAATAATGGTT
AAATTGCAGACCAATACATTATATAGAAAACATAATGCCTAAATAATTTA
TATTACAAATAACTTTTTTTTTCTTAAGCTTTACTTATTAGGGGCTACAA
CACTAAAATAATGTAGTATGAGAATCTTAGAGTTATATTTCAAACTCATG
AGTTATATTTAGCCAGAAAAGCTAAATGTAAAACAGATTAGAGTTTCATT
TAGCCGTATAAATCAGATTAGTGTTTTATTTAGCCGTATAAAACATATTA
GAGTTTTATTTAGCAGTATAAAACAGATTAGATGTTGCTTAAAGTAATGT
AACATAATATTTTTTATAGGCTAATTGTTAGTGGTTAATTTGTTAAGTAG
CAGAGGTCGAGCGTTATACCTTATGCATATTATTCTTTTATATCCTAACT
TATACCACTGTTCTAGTCCTTCGGGATAGCAAAATAGTTTTATGAGTTTA
TCATTCATATTTATGTGGTTTAATTTATTGACAGATGATTCCAAGAAAGT
TTGTGGAGAAATATGGAGAAGGTTTACCAAAAACAATATCTCTCAAGCCT
CCAAATGGTAAAGAGTGGAAATTAGATTTGATAAAAAGTGATGGTAAAAT
ATGGTTTGGAAAGGGTTGGAAAGAATTTGCAGACTATCATTCTCTGGCTC
ATGGCCATCTTCTGGTTTTCAGATATGAAAAAGCTTTTCATTTTAAGATA
CACATATTTGATATGAGTGGCTTAGAGATAAACTATCCTTTCAGAGGAGT
AGAAGCTAAAAGGGTCTACAATAGTAACGGAAATATCTCCAAATAA

Coding sequence (CDS) from alignment at Ca3_v2.0:48450348..48451443-

>drCicArie.Frontier.2.0.Ca_v2.0_06112.1 ID=drCicArie.Frontier.2.0.Ca_v2.0_06112.1; Name=evm.Ca_v2.0_06112; organism=Cicer arietinum; type=CDS; length=393bp; location=Sequence derived from: Ca3_v2.0:48450348..48451443- (Cicer arietinum
ATGGCTAATGAAATTTCTCAAGTGAAACCATTCCACTTTTTCAAGATCAT
ACTTAATCAAAGCCTTCGTGAAGGAAAGCTTATGATTCCAAGAAAGTTTG
TGGAGAAATATGGAGAAGGTTTACCAAAAACAATATCTCTCAAGCCTCCA
AATGGTAAAGAGTGGAAATTAGATTTGATAAAAAGTGATGGTAAAATATG
GTTTGGAAAGGGTTGGAAAGAATTTGCAGACTATCATTCTCTGGCTCATG
GCCATCTTCTGGTTTTCAGATATGAAAAAGCTTTTCATTTTAAGATACAC
ATATTTGATATGAGTGGCTTAGAGATAAACTATCCTTTCAGAGGAGTAGA
AGCTAAAAGGGTCTACAATAGTAACGGAAATATCTCCAAATAA

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR003340	B3_DNA-bd
IPR015300	DNA-bd_pseudobarrel_sf
IPR050655	Plant_B3_domain

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding

Search form

evm.Ca_v2.0_06112