Vigst.02G109200.01

Transcript Overview
NameVigst.02G109200.01
Unique NamedrVigStip.JP252948.2.0.Vigst.02G109200.01
TypemRNA
OrganismVigna stipulacea ()
Sequence length309
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr02chromosomeChr02:10815148..10815905 +Vigna stipulacea acc. JP252948 genome v2.a1n/a
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
vstvvaR284Vicia villosa cv. AU Merit genome v1.0Vicia villosa
vstvvaR317Vicia villosa cv. AU Merit genome v1.0Vicia villosa
vstvvaR345Vicia villosa cv. AU Merit genome v1.0Vicia villosa
anvstL0256Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvstL0373Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
avjvstL223Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
anvstL0423Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvstL0687Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
avjvstL502Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
anvstL0823Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
avjvstL636Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
pvvstL022Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
carvstL313Cicer arietinum cv. CDC Frontier genome v2.0Cicer arietinum
psvstL449Pisum sativum Cameor genome v1aPisum sativum
carvstL431Cicer arietinum cv. CDC Frontier genome v2.0Cicer arietinum
psvstL465Pisum sativum Cameor genome v1aPisum sativum
carvstL790Cicer arietinum cv. CDC Frontier genome v2.0Cicer arietinum
pvvstL873Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
vstvstL037Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
vstvstR159Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
vfhvstL262Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
vfhvstL400Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
vstvuR233Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
vstvuR247Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
vstvumR198Vigna umbellata FF25 genome v1.0Vigna umbellata
vstvumR236Vigna umbellata FF25 genome v1.0Vigna umbellata
vstvumR244Vigna umbellata FF25 genome v1.0Vigna umbellata
vasvstL232Vigna angularis cv. Shumari genome v1.a1Vigna angularis
vasvstL291Vigna angularis cv. Shumari genome v1.a1Vigna angularis

Orthologs
Gene/TranscriptAssemblySpecies
Vfaba.Hedin2.R1.2g128320.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
Psat5g082600.1Pisum sativum Cameor genome v1aPisum sativum
Vum_02G01196.1Vigna umbellata FF25 genome v1.0Vigna umbellata
Phvul.009G134100.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
Vigan.02G147400.01Vigna angularis cv. Shumari genome v1.a1Vigna angularis
Va04G052600.2Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
XM_058930861.1Vicia villosa cv. AU Merit genome v1.0Vicia villosa
evm.Ca_v2.0_14264Cicer arietinum cv. CDC Frontier genome v2.0Cicer arietinum
rna-TanjilR_14092Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Vigun09g156600.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Vigst.02G109200drVigStip.JP252948.2.0.Vigst.02G109200Vigna stipulaceagene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
nbis-exon-30268drVigStip.JP252948.2.0.nbis-exon-30268Vigna stipulaceaexon
nbis-exon-30269drVigStip.JP252948.2.0.nbis-exon-30269Vigna stipulaceaexon
nbis-exon-30270drVigStip.JP252948.2.0.nbis-exon-30270Vigna stipulaceaexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
cds-29245drVigStip.JP252948.2.0.cds-29245Vigna stipulaceaCDS
cds-29246drVigStip.JP252948.2.0.cds-29246Vigna stipulaceaCDS
cds-29247drVigStip.JP252948.2.0.cds-29247Vigna stipulaceaCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
drVigStip.JP252948.2.0.Vigst.02G109200.01drVigStip.JP252948.2.0.Vigst.02G109200.01Vigna stipulaceapolypeptide
drVigStip.JP252948.2.0.Vigst.02G109200.01drVigStip.JP252948.2.0.Vigst.02G109200.01-proteinVigna stipulaceapolypeptide


Homology
[Close]
BLAST of Vigst.02G109200.01 vs. ExPASy TrEMBL (2024)
Match: tr|A0A1S3VVB1|A0A1S3VVB1_VIGRR (Uncharacterized protein LOC106778845 OS=Vigna radiata var. radiata OX=3916 GN=LOC106778845 PE=4 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 7.257e-61
Identity = 97/102 (95.10%), Postives = 98/102 (96.08%), Query Frame = 0 
Query:    1 MKRYAAPAAAPPSPVENNDKIEKPLTPVSPPPKLERTNSLEDEPKTLLQEEMDNAREAALKIINSHTKEEALKIFLTGLVPVETTSKQVKKDVAVSDCDDYE 102
            MKRYAAPAA PPSP+ENND IEKPLTPVSPPPKLER NSLEDEPKTLLQEEMDNAREAALKIINSHTKEEALKIFLTGLVPVETTSKQVKKDV VSDCDDYE
Sbjct:    1 MKRYAAPAA-PPSPLENNDNIEKPLTPVSPPPKLERRNSLEDEPKTLLQEEMDNAREAALKIINSHTKEEALKIFLTGLVPVETTSKQVKKDVVVSDCDDYE 101
[Close]
BLAST of Vigst.02G109200.01 vs. ExPASy TrEMBL (2024)
Match: tr|A0A0S3RDU6|A0A0S3RDU6_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.02G147400 PE=4 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 3.991e-54
Identity = 96/102 (94.12%), Postives = 97/102 (95.10%), Query Frame = 0 
Query:    1 MKRYAAPAAAPPSPVENNDKIEKPLTPVSPPPKLERTNSLEDEPKTLLQEEMDNAREAALKIINSHTKEEALKIFLTGLVPVETTSKQVKKDVAVSDCDDYE 102
            MKRYAAPAAAP SPVENNDKIEKPL P SPPPKLER NSLE+EPKTLLQEEMDNAREAALKIINSHTKEEALKIFLTGLVPVETTSKQVKKDV VSDCDDYE
Sbjct:    1 MKRYAAPAAAP-SPVENNDKIEKPLAPASPPPKLERKNSLEEEPKTLLQEEMDNAREAALKIINSHTKEEALKIFLTGLVPVETTSKQVKKDVVVSDCDDYE 101
[Close]
BLAST of Vigst.02G109200.01 vs. ExPASy TrEMBL (2024)
Match: tr|A0A0L9UF14|A0A0L9UF14_PHAAN (Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan04g166800 PE=4 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 3.991e-54
Identity = 96/102 (94.12%), Postives = 97/102 (95.10%), Query Frame = 0 
Query:    1 MKRYAAPAAAPPSPVENNDKIEKPLTPVSPPPKLERTNSLEDEPKTLLQEEMDNAREAALKIINSHTKEEALKIFLTGLVPVETTSKQVKKDVAVSDCDDYE 102
            MKRYAAPAAAP SPVENNDKIEKPL P SPPPKLER NSLE+EPKTLLQEEMDNAREAALKIINSHTKEEALKIFLTGLVPVETTSKQVKKDV VSDCDDYE
Sbjct:    1 MKRYAAPAAAP-SPVENNDKIEKPLAPASPPPKLERKNSLEEEPKTLLQEEMDNAREAALKIINSHTKEEALKIFLTGLVPVETTSKQVKKDVVVSDCDDYE 101
[Close]
BLAST of Vigst.02G109200.01 vs. ExPASy TrEMBL (2024)
Match: tr|A0A4D6NP66|A0A4D6NP66_VIGUN (Uncharacterized protein OS=Vigna unguiculata OX=3917 GN=DEO72_LG11g2682 PE=4 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 5.696e-49
Identity = 88/103 (85.44%), Postives = 92/103 (89.32%), Query Frame = 0 
Query:    1 MKRYAAPAAAPPSP-VENNDKIEKPLTPVSPPPKLERTNSLEDEPKTLLQEEMDNAREAALKIINSHTKEEALKIFLTGLVPVETTSKQVKKDVAVSDCDDYE 102
            MKR+AAP  A  +P VENNDK+EKPLTPVS P KLER NS+E EPKTLLQEEMDNAREAALKIINSHTKEEALKIFLTGLVPVETTSKQVKKDV  SDCDDYE
Sbjct:    1 MKRHAAPGGASAAPPVENNDKVEKPLTPVSLPTKLERKNSIEAEPKTLLQEEMDNAREAALKIINSHTKEEALKIFLTGLVPVETTSKQVKKDVVGSDCDDYE 103
[Close]
BLAST of Vigst.02G109200.01 vs. ExPASy TrEMBL (2024)
Match: tr|A0AA86T5G5|A0AA86T5G5_9FABA (Uncharacterized protein OS=Sphenostylis stenocarpa OX=92480 GN=AYBTSS11_LOCUS26399 PE=4 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.920e-42
Identity = 80/102 (78.43%), Postives = 85/102 (83.33%), Query Frame = 0 
Query:    2 KRYAAPAAAPPSPVENNDKIEKPLTPVSPPPKLERTNSLEDEPKTLLQEEMDNAREAALKIINSHTKEEALKIFLTGLVPVETTS-KQVKKDVAVSDCDDYE 102
            K    PA A  + VE NDKIEKPLTPVSPPPKLER NSLE EPKTLLQEEMD AREAALKIINSHT+EEALKIFLTGLVPVET S KQVK++V  SDCD+ E
Sbjct:   74 KNRHTPATAAAT-VEKNDKIEKPLTPVSPPPKLERKNSLESEPKTLLQEEMDMAREAALKIINSHTQEEALKIFLTGLVPVETISPKQVKENVVASDCDEDE 174
[Close]
BLAST of Vigst.02G109200.01 vs. ExPASy TrEMBL (2024)
Match: tr|V7AZ53|V7AZ53_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_009G134100g PE=4 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 1.202e-38
Identity = 85/102 (83.33%), Postives = 94/102 (92.16%), Query Frame = 0 
Query:    1 MKRYAAPAAAPPSPVENNDKIEKPLTPVSPPPKLERTNSLEDEPKTLLQEEMDNAREAALKIINSHTKEEALKIFLTGLVPVETTSKQVKKDVAVSDCDDYE 102
            MKR+AA AAAPP  VE +DKIEKPLTP++PPPKLER NS+E EPKTLLQEEMDNAREAALKI+NSHTKEEALKIFLTGL+PVET+S+QVKKDV VSDCDD E
Sbjct:    1 MKRHAAAAAAPP--VEKSDKIEKPLTPLTPPPKLERKNSIEAEPKTLLQEEMDNAREAALKILNSHTKEEALKIFLTGLMPVETSSRQVKKDVVVSDCDDNE 100
[Close]
BLAST of Vigst.02G109200.01 vs. ExPASy TrEMBL (2024)
Match: tr|A0A371I1W7|A0A371I1W7_MUCPR (Uncharacterized protein (Fragment) OS=Mucuna pruriens OX=157652 GN=CR513_06758 PE=4 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 1.781e-32
Identity = 64/100 (64.00%), Postives = 74/100 (74.00%), Query Frame = 0 
Query:    1 MKRYAAPAAAPPSPVENNDKIEKPLTPVSPPPKLERTNSLEDEPKTLLQEEMDNAREAALKIINSHTKEEALKIFLTGLVPVETTSKQVKKDVAVSDCDD 100
            MK ++A         E  D  +KPLT + PP KLER  S++ EPKTLL +E+  AREAALKIINSHTKEEALKIFLTGLVPV T+SKQVK+D  VSDCDD
Sbjct:    1 MKHHSA---------EKKDNTDKPLTTMPPPLKLERKPSIDTEPKTLLHDELKMAREAALKIINSHTKEEALKIFLTGLVPVATSSKQVKEDSVVSDCDD 91
[Close]
BLAST of Vigst.02G109200.01 vs. ExPASy TrEMBL (2024)
Match: tr|A0A8B8K2I6|A0A8B8K2I6_ABRPR (Uncharacterized protein LOC113850914 OS=Abrus precatorius OX=3816 GN=LOC113850914 PE=4 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 2.158e-26
Identity = 61/86 (70.93%), Postives = 70/86 (81.40%), Query Frame = 0 
Query:   16 ENNDKIEKPLTPVSPPPK-LERTNSLEDEPKTLLQEEMDNAREAALKIINSHTKEEALKIFLTGLVPVETTSKQVKKDVAVSDCDD 100
            E  D IEKP+ P+ PPP  LER  SL+ EPKTLLQEE++ AREAALKIIN+HTKEEALKIF+ GLVPV T+SKQ  +D AVSDCDD
Sbjct:    7 EKKDAIEKPIAPMPPPPPMLERKPSLDAEPKTLLQEELNLAREAALKIINTHTKEEALKIFMKGLVPV-TSSKQATEDAAVSDCDD 91
[Close]
BLAST of Vigst.02G109200.01 vs. ExPASy TrEMBL (2024)
Match: tr|A0A445K8I9|A0A445K8I9_GLYSO (Uncharacterized protein OS=Glycine soja OX=3848 GN=D0Y65_014472 PE=4 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 3.293e-26
Identity = 51/66 (77.27%), Postives = 58/66 (87.88%), Query Frame = 0 
Query:   35 ERTNSLEDEPKTLLQEEMDNAREAALKIINSHTKEEALKIFLTGLVPVETTSKQVKKDVAVSDCDD 100
            ERT S++DEPKTLL+EEM  AREAALKIINSH+KE+ALKIFL GLVPV T+SKQVK+D  VSD DD
Sbjct:   30 ERTTSIDDEPKTLLEEEMKVAREAALKIINSHSKEDALKIFLAGLVPVGTSSKQVKEDGVVSDYDD 95
[Close]
BLAST of Vigst.02G109200.01 vs. ExPASy TrEMBL (2024)
Match: tr|I1KAI6|I1KAI6_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_06G121600 PE=4 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 3.293e-26
Identity = 51/66 (77.27%), Postives = 58/66 (87.88%), Query Frame = 0 
Query:   35 ERTNSLEDEPKTLLQEEMDNAREAALKIINSHTKEEALKIFLTGLVPVETTSKQVKKDVAVSDCDD 100
            ERT S++DEPKTLL+EEM  AREAALKIINSH+KE+ALKIFL GLVPV T+SKQVK+D  VSD DD
Sbjct:   30 ERTTSIDDEPKTLLEEEMKVAREAALKIINSHSKEDALKIFLAGLVPVGTSSKQVKEDGVVSDYDD 95
The following BLAST results are available for this feature:
BLAST of Vigst.02G109200.01 vs. ExPASy TrEMBL (2024)
Analysis Date: 2024-08-17 (Blastp of Vigna stipulacea acc. JP252948 v1.0 proteins vs UniProt TrEMBL)
Total hits: 10
Match NameE-valueIdentityDescription
tr|A0A1S3VVB1|A0A1S3VVB1_VIGRR7.257e-6195.10Uncharacterized protein LOC106778845 OS=Vigna radi... [more]
tr|A0A0S3RDU6|A0A0S3RDU6_PHAAN3.991e-5494.12Uncharacterized protein OS=Vigna angularis var. an... [more]
tr|A0A0L9UF14|A0A0L9UF14_PHAAN3.991e-5494.12Uncharacterized protein OS=Phaseolus angularis OX=... [more]
tr|A0A4D6NP66|A0A4D6NP66_VIGUN5.696e-4985.44Uncharacterized protein OS=Vigna unguiculata OX=39... [more]
tr|A0AA86T5G5|A0AA86T5G5_9FABA2.920e-4278.43Uncharacterized protein OS=Sphenostylis stenocarpa... [more]
tr|V7AZ53|V7AZ53_PHAVU1.202e-3883.33Uncharacterized protein OS=Phaseolus vulgaris OX=3... [more]
tr|A0A371I1W7|A0A371I1W7_MUCPR1.781e-3264.00Uncharacterized protein (Fragment) OS=Mucuna pruri... [more]
tr|A0A8B8K2I6|A0A8B8K2I6_ABRPR2.158e-2670.93Uncharacterized protein LOC113850914 OS=Abrus prec... [more]
tr|A0A445K8I9|A0A445K8I9_GLYSO3.293e-2677.27Uncharacterized protein OS=Glycine soja OX=3848 GN... [more]
tr|I1KAI6|I1KAI6_SOYBN3.293e-2677.27Uncharacterized protein OS=Glycine max OX=3847 GN=... [more]
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BLAST of Vigst.02G109200.01 vs. ExPASy TrEMBL (2024)
Analysis Date: 2024-08-17 (Blastp of Vigna stipulacea acc. JP252948 v1.0 proteins vs UniProt Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Vigst.02G109200.01 vs. ExPASy TrEMBL (2024)
Analysis Date: 2024-08-17 (Blastp of Vigna stipulacea acc. JP252948 v1.0 proteins vs arabidopsis Araport11)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan Analysis for Vigna stipulacea acc. JP252948 genome v1.0
Date Performed: 2024-08-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34808EXPRESSED PROTEINcoord: 31..96

Sequences
The following sequences are available for this feature:

mRNA sequence

>drVigStip.JP252948.2.0.Vigst.02G109200.01 ID=drVigStip.JP252948.2.0.Vigst.02G109200.01; Name=Vigst.02G109200.01; organism=Vigna stipulacea; type=mRNA; length=309bp
ATGAAGCGTTACGCAGCGCCTGCAGCAGCACCACCATCACCAGTGGAGAA
CAATGACAAGATCGAGAAACCATTAACACCAGTGTCTCCTCCTCCCAAGC
TTGAGAGGACAAATTCCCTTGAGGATGAACCAAAAACTTTACTTCAGGAG
GAAATGGATAATGCCAGGGAGGCAGCCCTCAAAATCATCAATTCCCACAC
CAAGGAGGAAGCTCTGAAAATATTCCTGACGGGTTTGGTGCCAGTGGAAA
CAACCTCAAAGCAGGTGAAAAAGGATGTTGCCGTGTCTGACTGTGATGAC
TACGAGTGA
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protein sequence of drVigStip.JP252948.2.0.Vigst.02G109200.01

>drVigStip.JP252948.2.0.Vigst.02G109200.01 ID=drVigStip.JP252948.2.0.Vigst.02G109200.01; Name=drVigStip.JP252948.2.0.Vigst.02G109200.01; organism=Vigna stipulacea; type=polypeptide; length=103bp
MKRYAAPAAAPPSPVENNDKIEKPLTPVSPPPKLERTNSLEDEPKTLLQE
EMDNAREAALKIINSHTKEEALKIFLTGLVPVETTSKQVKKDVAVSDCDD
YE*
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mRNA from alignment at Chr02:10815148..10815905+

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>drVigStip.JP252948.2.0.Vigst.02G109200.01 ID=drVigStip.JP252948.2.0.Vigst.02G109200.01; Name=Vigst.02G109200.01; organism=Vigna stipulacea; type=mRNA; length=758bp; location=Sequence derived from: Chr02:10815148..10815905+ (Vigna stipulacea
ATGAAGCGTTACGCAGCGCCTGCAGCAGCACCACCATCACCAGTGGAGAA
CAATGACAAGATCGAGAAACCATTAACACCAGTGTCTCCTCCTCCCAAGC
TTGAGAGGACAAATTCCCTTGAGGATGAACCAAAAACTTTACTTCAGGAG
GAAATGGATAATGCCAGGGTTTGATCACTCTCTTTCTTCTAAATTATTAT
TATAATTTTACTCTGATCTTTCTCTTTACTGTTCCAAGATCCAATTAATT
TCTTCCATTTTTTTTTCTTTATTCTTAAAATTCTCTTTGCAGGAGGCAGC
CCTCAAAATCATCAATTCCCACACCAAGGAGGAAGCTCTGAAAATATTCC
TGACGGTAATTGAAATGATTTCTTAGATTTGGTAATAATGATTTACTTTT
ATTTTTGCAGATCATCAGAACTTTTCCTTTTATGGTACACCAGATCTATT
TACTCTTGTTTTGAGAAGTTTTCTGAATGAATCAGGATCTGTGTAACAAA
CACTGTGCTAGTGATTTTTCCTATTCTTAATTAGTTTCTTAAGATTATTA
TGCATCAGAAATTACAATTTTTTAAATACCGATCCAATTAACTTTTTCTG
ATGAAAAAGGGAAATTAAGGTGAAATGTTGGAAGCTAATAATGTGTTCAT
TGAATTTTTTTCTATTTTTTTTGGTATTAGGGTTTGGTGCCAGTGGAAAC
AACCTCAAAGCAGGTGAAAAAGGATGTTGCCGTGTCTGACTGTGATGACT
ACGAGTGA
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Coding sequence (CDS) from alignment at Chr02:10815148..10815905+

>drVigStip.JP252948.2.0.Vigst.02G109200.01 ID=drVigStip.JP252948.2.0.Vigst.02G109200.01; Name=Vigst.02G109200.01; organism=Vigna stipulacea; type=CDS; length=309bp; location=Sequence derived from: Chr02:10815148..10815905+ (Vigna stipulacea
ATGAAGCGTTACGCAGCGCCTGCAGCAGCACCACCATCACCAGTGGAGAA
CAATGACAAGATCGAGAAACCATTAACACCAGTGTCTCCTCCTCCCAAGC
TTGAGAGGACAAATTCCCTTGAGGATGAACCAAAAACTTTACTTCAGGAG
GAAATGGATAATGCCAGGGAGGCAGCCCTCAAAATCATCAATTCCCACAC
CAAGGAGGAAGCTCTGAAAATATTCCTGACGGGTTTGGTGCCAGTGGAAA
CAACCTCAAAGCAGGTGAAAAAGGATGTTGCCGTGTCTGACTGTGATGAC
TACGAGTGA
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