PvulFLAVERTChr11.1000520
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Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses Orthologs
Syntenic blocks Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of PvulFLAVERTChr11.1000520 vs. ExPASy TrEMBL (2024)
Match: tr|G8DCX3|G8DCX3_PHAVU (Putative retrotransposon OS=Phaseolus vulgaris OX=3885 PE=4 SV=1) HSP 1 Score: 253.832 bits (647), Expect = 5.715e-78 Identity = 138/343 (40.23%), Postives = 180/343 (52.48%), Query Frame = 0 Query: 2 GEEKGMWKQVLISKYGTEKDRYCNNKKYPSWWWKDLGKSCGEGEEESWFHVEIGWKVGSGDKVRFWEDAWLGTSLLSVIYPRLYSVSLDQGRRVSEVGVWEEDIRSWRLRWRRTRFQWEVEQENELLTTVDRVSLSREAKDTLSWRGDSSSMFSVKSAYERINQRSGCRPCRVFTQLWQTKAFPNVLVTTWRVLLDKLPTRAYLVRRRVTVPSLLCVMCGSENESTQHLFVTCKVAQRVWDRCLRWVGILYVQHYDLQCHFEQFCLLQINHKQNCVWKGVWAAVVRCLWEQRNIIVFKQGVVDEEEIFHLAQIKAWLWMKYIMHSFNYTLAEWHLNPIQCLVS 344
E+G K +L+SKYG + + ++K+ SWWW+DL K GE E W + WKVG G+K RFWED W+G + L YPRL+S+SLDQG V E L W GD S F+VKSAY+ + + P F QLWQ KA PN L T WRVLLDK+PTR+ L RR V W+GIL+VQH DL+ HFE F L+ +N KQN VWKG+W VR +WEQRN+++FKQG +D EEIFH AQ+ +WLW+K +H+FN++ ++W LNP C+ S
Sbjct: 123 NNEEGKLKDILVSKYGVDFGQRQIHQKFQSWWWRDLSKVSGEDYEVGWVQKTLCWKVGYGNKARFWEDTWVGRNNLLSQYPRLFSLSLDQGLTVGE--------------------------------------------HVLEWGGDPSGEFTVKSAYKYLENHAPIWPEGFFKQLWQVKALPNALTTAWRVLLDKMPTRSSLSRRGV------------------------------------WMGILFVQHKDLKVHFENFHLVHLNTKQNLVWKGLWVTTVRGIWEQRNLLIFKQGKLDAEEIFHQAQLNSWLWLKNRVHNFNFSFSDWILNPELCVKS 385
BLAST of PvulFLAVERTChr11.1000520 vs. ExPASy TrEMBL (2024)
Match: tr|G8DCX0|G8DCX0_PHAVU (Putative retrotransposon OS=Phaseolus vulgaris OX=3885 PE=4 SV=1) HSP 1 Score: 262.307 bits (669), Expect = 7.562e-75 Identity = 136/324 (41.98%), Postives = 184/324 (56.79%), Query Frame = 0 Query: 1 MGEEKGMWKQVLISKYGTEKDRYCNNKKYPSWWWKDLGKSCGEGEEESWFHVEIGWKVGSGDKVRFWEDAWLGTSLLSVIYPRLYSVSLDQGRRVSEVGVWEEDIRSWRLRWRRTRFQWEVEQENELLTTVDRVSLSREAKDTLSWRGDSSSMFSVKSAYERINQRSGCRPCRVFTQLWQTKAFPNVLVTTWRVLLDKLPTRAYLVRRRVTVPSLLCVMCGSENESTQHLFVTCKVAQRVWDRCLRWVGILYVQHYDLQCHFEQFCLLQINHKQNCVWKGVWAAVVRCLWEQRNIIVFKQGVVDEEEIFHLAQIKAWLWMKYIM 324
+ EEKG WK +L SKY D K SWWW+DL K C EG + WF E+GW++G GDKV+F E+ W+G+ L ++PRLYS+SL+QG+ V E+G W + WR+RW+R RF+WE E +L+ + V+L + +D W + +FSV SAYE + + V+ LW+ KAFPNV+VT WRVLL KLPTR H DL+ HF+ F L Q ++KQN +WKGVWA V+RC+W+QRN+I F+QGVVD EEIF AQ+K+WLWMK ++
Sbjct: 1340 VSEEKGRWKTLLESKYNLGIDSSQTPVKSQSWWWRDLSKMCKEGGGKGWFQEELGWEIGYGDKVKFSEEVWVGSVDLKSLFPRLYSLSLNQGQTVGELGEWIDSEWRWRMRWKRDRFEWESSLERDLIALLSGVTLKKNVQDIQVWGKEVPGLFSVNSAYECLAKHDRGNQSEVYKLLWKVKAFPNVVVTAWRVLLSKLPTR----------------------------------------------------HNDLRLHFQSFHLFQASNKQNKIWKGVWANVIRCIWDQRNLITFQQGVVDAEEIFQRAQLKSWLWMKTLL 1611
BLAST of PvulFLAVERTChr11.1000520 vs. ExPASy TrEMBL (2024)
Match: tr|G8DCX5|G8DCX5_PHAVU (Putative non-LTR retroelement OS=Phaseolus vulgaris OX=3885 PE=4 SV=1) HSP 1 Score: 208.764 bits (530), Expect = 1.232e-62 Identity = 97/190 (51.05%), Postives = 133/190 (70.00%), Query Frame = 0 Query: 154 FSVKSAYERINQRSGCRPCRVFTQLWQTKAFPNVLVTTWRVLLDKLPTRAYLVRRRVTVPSLLCVMCGSENESTQHLFVTCKVAQRVWDRCLRWVGILYVQHYDLQCHFEQFCLLQINHKQNCVWKGVWAAVVRCLWEQRNIIVFKQGVVDEEEIFHLAQIKAWLWMKYIMHSFNYTLAEWHLNPIQCLV 343
+SV AY+ + Q + F +W KAFP+VL T WRVL++++PTR L RR + + S+ CV+C + ES QHLF+ C A++VW CL+W+GIL+VQH DL+ HF F + Q + KQN V KGVWAA+VRC+W+QRN I+FKQGVVD EEIF +AQ+K+WLWMK+ + Y+ +W LNP C+V
Sbjct: 4 YSVNLAYKSLAQGTSDTYHAAFAYIWNAKAFPSVLTTAWRVLVNRIPTREGLSRRGIQLNSIACVLCQIKEESCQHLFIECLYAKQVWSLCLKWLGILFVQHNDLKDHFVSFHIAQASSKQNLVLKGVWAAIVRCIWDQRNTILFKQGVVDVEEIFQMAQLKSWLWMKHRAYFHTYSFVDWLLNPSSCIV 193
BLAST of PvulFLAVERTChr11.1000520 vs. ExPASy TrEMBL (2024)
Match: tr|A0A151RNK2|A0A151RNK2_CAJCA (Ribonuclease H protein At1g65750 family OS=Cajanus cajan OX=3821 GN=KK1_034421 PE=4 SV=1) HSP 1 Score: 209.92 bits (533), Expect = 1.771e-61 Identity = 122/340 (35.88%), Postives = 171/340 (50.29%), Query Frame = 0 Query: 7 MWKQVLISKY-GTEKDRYCNNKKYPSWWWKDLGKSCGEGEEESWFHVEIGWKVGSGDKVRFWEDAWLGTSLLSVIYPRLYSVSLDQGRRVSEVGVWEEDIRSWRLRWRRTRFQWEVEQENELLTTVDRVSLSREAKDTLSWRGDSSSMFSVKSAYERINQRS-GCRPCRVFTQLWQTKAFPNVLVTTWRVLLDKLPTRAYLVRRRVTVP--SLLCVMCGSENESTQHLFVTCKVAQRVWDRCLRWVGILYVQHYDLQCHFEQFCLLQINHKQNCVWKGVWAAVVRCLWEQRNIIVFKQGVVDEEEIFHLAQIKAWLWMKYIMHSFNYTLAEWHLNPIQCL 342
MW QVL S+Y G + + S WW+DL CG EE++WF I W+VG G KVRFW D W+G + L+V +PRL+ S Q ++E+G + W LRWRR RF+WE+ E +LL ++ + D+ SW +SS MFSVKSAY+ I S +F +W A P VL WR+L LPT L RR + + C+ C + E+T H+F TC + RVW +CL W+ + HF N + W VW A + LW RN +F G ++ I I W W+ + SF Y+ ++W NP C+
Sbjct: 1 MWAQVLQSRYRGGHNLCAQASSQKDSIWWRDLLMVCGGVEEDNWFDKLIEWRVGVGSKVRFWLDKWVGPTNLAVAFPRLFISSDQQLASIAEIGAFVNGEWVWHLRWRRNRFEWEIPLEQQLLRLINSRIFNSSQCDSWSWVAESSGMFSVKSAYQIILAESVTIEDHDIFKLIWSIPAPPKVLFFAWRLLNRGLPTVDNLARRNILLGEHESRCIFCKVDIETTTHIFCTCPMVDRVWKQCLSWLNCPAPLPRQIFDHFSFLPAPIQNESEAETWHTVWLATMWTLWRYRNKCIFDGGTFEQGSIVRDILIFCWRWLSTLKPSFAYSFSQWSSNPGPCI 340
BLAST of PvulFLAVERTChr11.1000520 vs. ExPASy TrEMBL (2024)
Match: tr|A0A151QUW0|A0A151QUW0_CAJCA (Ribonuclease H protein At1g65750 family OS=Cajanus cajan OX=3821 GN=KK1_045054 PE=4 SV=1) HSP 1 Score: 211.075 bits (536), Expect = 8.981e-61 Identity = 122/344 (35.47%), Postives = 172/344 (50.00%), Query Frame = 0 Query: 3 EEKGMWKQVLISKY-GTEKDRYCNNKKYPSWWWKDLGKSCGEGEEESWFHVEIGWKVGSGDKVRFWEDAWLGTSLLSVIYPRLYSVSLDQGRRVSEVGVWEEDIRSWRLRWRRTRFQWEVEQENELLTTVDRVSLSREAKDTLSWRGDSSSMFSVKSAYERINQRS-GCRPCRVFTQLWQTKAFPNVLVTTWRVLLDKLPTRAYLVRRRVTVP--SLLCVMCGSENESTQHLFVTCKVAQRVWDRCLRWVGILYVQHYDLQCHFEQFCLLQINHKQNCVWKGVWAAVVRCLWEQRNIIVFKQGVVDEEEIFHLAQIKAWLWMKYIMHSFNYTLAEWHLNPIQCL 342
+ MW QVL S+Y G + + S WW+DL CG EE++WF I W+VG G KVRFW D W+G + L+V +PRL+ S Q ++E+G + W LRWRR RF+WE+ E +LL ++ + D+ SW +SS MFSVKSAY+ I S +F +W A P VL WR+L LPT L RR + + C+ C + E+T H+F TC + RVW +CL W+ + HF N + W VW A + LW RN +F G ++ I I W W+ + SF Y+ ++W NP C+
Sbjct: 94 QSSSMWAQVLQSRYRGGHNLCAQASSQKDSIWWRDLLMVCGGVEEDNWFDKLIEWRVGVGSKVRFWLDKWVGPTNLAVAFPRLFISSDQQLASIAEIGAFVNGEWVWHLRWRRNRFEWEIPLEQQLLRLINSRIFNSSQCDSWSWVAESSGMFSVKSAYQIILAESVTIEDHDIFKLIWSIPAPPKVLFFAWRLLNRGLPTVDNLARRNILLGEHESRCIFCKVDIETTTHIFCTCPMVDRVWKQCLSWLNCPAPLPRQIFDHFSFLPAPIQNESEAETWHTVWLATMWTLWRYRNKCIFDGGTFEQGSIVRDILIFCWRWLSTLKPSFAYSFSQWSSNPGPCI 437
BLAST of PvulFLAVERTChr11.1000520 vs. ExPASy TrEMBL (2024)
Match: tr|A0A151SXX7|A0A151SXX7_CAJCA (Ribonuclease H protein At1g65750 family OS=Cajanus cajan OX=3821 GN=KK1_015104 PE=4 SV=1) HSP 1 Score: 209.92 bits (533), Expect = 1.034e-60 Identity = 122/344 (35.47%), Postives = 172/344 (50.00%), Query Frame = 0 Query: 3 EEKGMWKQVLISKY-GTEKDRYCNNKKYPSWWWKDLGKSCGEGEEESWFHVEIGWKVGSGDKVRFWEDAWLGTSLLSVIYPRLYSVSLDQGRRVSEVGVWEEDIRSWRLRWRRTRFQWEVEQENELLTTVDRVSLSREAKDTLSWRGDSSSMFSVKSAYERINQRS-GCRPCRVFTQLWQTKAFPNVLVTTWRVLLDKLPTRAYLVRRRVTVP--SLLCVMCGSENESTQHLFVTCKVAQRVWDRCLRWVGILYVQHYDLQCHFEQFCLLQINHKQNCVWKGVWAAVVRCLWEQRNIIVFKQGVVDEEEIFHLAQIKAWLWMKYIMHSFNYTLAEWHLNPIQCL 342
+ MW QVL S+Y G + + S WW+DL CG EE++WF I W+VG G KVRFW D W+G + L+V +PRL+ S Q ++E+G + W LRWRR RF+WE+ E +LL ++ + D+ SW +SS MFSVKSAY+ I S +F +W A P VL WR+L LPT L RR + + C+ C + E+T H+F TC + RVW +CL W+ + HF N + W VW A + LW RN +F G ++ I I W W+ + SF Y+ ++W NP C+
Sbjct: 60 QSSSMWAQVLQSRYRGGHNLCAQASSQKDSIWWRDLLMVCGGVEEDNWFDKLIEWRVGVGSKVRFWLDKWVGPTNLAVAFPRLFISSDQQLASIAEIGAFVNGEWVWHLRWRRNRFEWEIPLEQQLLRLINSRIFNSSQCDSWSWVAESSGMFSVKSAYQIILAESVTIEDHDIFKLIWSIPAPPKVLFFAWRLLNRGLPTVDNLARRNILLGEHESKCIFCKVDIETTTHIFCTCPMVDRVWKQCLSWLNCPAPLPRQIFDHFSFLPAPIQNESEAETWHTVWLATMWTLWRYRNKCIFVGGTFEQGSIVRDILIFCWRWLSTLKPSFAYSFSQWSSNPGPCI 403
BLAST of PvulFLAVERTChr11.1000520 vs. ExPASy TrEMBL (2024)
Match: tr|A0A151TV75|A0A151TV75_CAJCA (Ribonuclease H protein At1g65750 family OS=Cajanus cajan OX=3821 GN=KK1_010134 PE=4 SV=1) HSP 1 Score: 209.92 bits (533), Expect = 8.104e-59 Identity = 115/343 (33.53%), Postives = 182/343 (53.06%), Query Frame = 0 Query: 7 MWKQVLISKYGTEKD---RYCNNKKYPSWWWKDLGKSCGEGEEESWFHVEIGWKVGSGDKVRFWEDAWLGTSLLSVIYPRLYSVSLDQGRRVSEVGVWEEDIRSWRLRWRRTRFQWEVEQENELLTTVDRVSLSREAKDTLSWRGDSSSMFSVKSAYERI-NQRSGCRPCRVFTQLWQTKAFPNVLVTTWRVLLDKLPTRAYLVRRRVTVPSLLCVMCGSENESTQHLFVTCKVAQRVWDRCLRWVGILYVQHYDLQCHFEQFCLLQINHKQNC---VWKGVWAAVVRCLWEQRNIIVFKQGVVDEEEIFHLAQIKAWLWMKYIMHSFNYTLAEWHLNPIQCL 342
+W +V+ SKYG + N Y WW+DL K CG G E+ WF I WK+G G KVRFW D W+G L+ YPRL+S+S + ++++G W ++ W+ +WRR F+WE Q L+ + V L + +D+ W +++ MFSV S Y I RSG F Q+W+T+ P V + WR+L +PT L++R + L+CV C +E EST H+ +C + +W + LR + + ++ H FC + + + W+ +W+A C+W RN VF + + +++ AW W+ + SFNYT ++W +NP QC+
Sbjct: 276 LWSRVVRSKYGGCANLCSEATTNSDYI--WWRDLLKVCGSGSEDRWFDRLIKWKIGDGTKVRFWLDNWVGDECLANTYPRLFSISEQKFHLITDMGYWIQERWVWQFQWRRNWFEWERNQGQSLMDDLRNVILHKNHQDSWIWLLEATGMFSVNSTYNHITTHRSGAEMDSKFKQIWKTRVPPKVQIFVWRLLHKGIPTVENLLKRNIV---LVCVFCKTEVESTPHIICSCPLVDAIWKQWLRSIDCPAPLPHLIEQH---FCFIPASLESKSEVEKWRVIWSATSWCIWRHRNACVFDGEIFNLDKLNKEVLFFAWSWLNILHKSFNYTFSQWSINPGQCI 610
BLAST of PvulFLAVERTChr11.1000520 vs. ExPASy TrEMBL (2024)
Match: tr|A0A151RX45|A0A151RX45_CAJCA (Ribonuclease H protein At1g65750 family OS=Cajanus cajan OX=3821 GN=KK1_031352 PE=4 SV=1) HSP 1 Score: 204.142 bits (518), Expect = 4.751e-58 Identity = 120/344 (34.88%), Postives = 170/344 (49.42%), Query Frame = 0 Query: 3 EEKGMWKQVLISKY-GTEKDRYCNNKKYPSWWWKDLGKSCGEGEEESWFHVEIGWKVGSGDKVRFWEDAWLGTSLLSVIYPRLYSVSLDQGRRVSEVGVWEEDIRSWRLRWRRTRFQWEVEQENELLTTVDRVSLSREAKDTLSWRGDSSSMFSVKSAYERINQRS-GCRPCRVFTQLWQTKAFPNVLVTTWRVLLDKLPTRAYLVRRRVTVP--SLLCVMCGSENESTQHLFVTCKVAQRVWDRCLRWVGILYVQHYDLQCHFEQFCLLQINHKQNCVWKGVWAAVVRCLWEQRNIIVFKQGVVDEEEIFHLAQIKAWLWMKYIMHSFNYTLAEWHLNPIQCL 342
+ MW QVL S+Y G + + S WW+DL CG EE++WF I W+VG G KVRFW D W+G + L+V +PRL+ S Q ++E+G + W LRWRR RF+WE+ E +LL ++ + D+ SW +SS MFSVKSAY+ I S +F +W A P VL WR+L LPT L RR + + C+ C + E+T H+F TC + RVW +CL W+ + HF Q W VW A + LW R+ +F G ++ I I W W+ + SF Y+ ++W N C+
Sbjct: 99 QSSSMWAQVLQSRYRGGHNLCAQASSQKDSIWWRDLLMVCGGVEEDNWFDKLIEWRVGVGSKVRFWLDKWVGPTNLAVAFPRLFISSDQQLASIAEIGAFVNGEWVWHLRWRRNRFEWEIPLEQQLLRLINSRIFNSSQCDSWSWVAESSGMFSVKSAYQIILAESVTIEDHDIFKLIWSIPAPPKVLFFAWRLLNRGLPTVDNLARRNILLGEHESRCIFCKVDIETTTHIFCTCPMVDRVWKQCLSWLNCPAPLPRQIFDHFSFLPAPIKTESQAKTWHTVWLATMWTLWRYRDKWIFDSGTFEQGSIVRDILIFCWRWLSTLKPSFAYSFSQWSSNHGPCI 442
BLAST of PvulFLAVERTChr11.1000520 vs. ExPASy TrEMBL (2024)
Match: tr|A0A151SHT9|A0A151SHT9_CAJCA (Ribonuclease H protein At1g65750 family OS=Cajanus cajan OX=3821 GN=KK1_000540 PE=4 SV=1) HSP 1 Score: 201.06 bits (510), Expect = 4.788e-55 Identity = 114/344 (33.14%), Postives = 183/344 (53.20%), Query Frame = 0 Query: 7 MWKQVLISKYGTEKDRYCN--NKKYPSWWWKDLGKSCGEGEEESWFHVEIGWKVGSGDKVRFWEDAWLGTSLLSVIYPRLYSVSLDQGRRVSEVGVWEEDIRSWRLRWRRTRFQWEVEQENELLTTVDRVSLSREAKDTLSWRGDSSSMFSVKSAYERI-NQRSGCRPCRVFTQLWQTKAFPNVLVTTWRVLLDKLPTRAYLVRRRVTVPS--LLCVMCGSENESTQHLFVTCKVAQRVWDRCLRWVGILYVQHYDLQCHFEQFCLLQINHKQNC---VWKGVWAAVVRCLWEQRNIIVFKQGVVDEEEIFHLAQIKAWLWMKYIMHSFNYTLAEWHLNPIQCL 342
+W +V+ SKYG + C+ S W+DL K CG G E+ WF I WK+G G KVRFW D W+G L+ Y RL+S+S + + ++G W ++ W+ +WRR F+WE QE L+ + V L + +D+ W +++ +FSV S Y I RSG F ++W+T+ P V + WR+L +PT L++R + + S LLCV C +E EST H+ +C + +W + LR + + ++ H FC + + + W+ +W+A C+W RN VF + + +++ AW W+ + SFNYT ++W +NP QC+
Sbjct: 341 LWGRVVRSKYGGCAN-LCSEATTNSDSIRWRDLLKVCGSGSEDRWFDRLIKWKIGDGTKVRFWLDNWVGDECLTNTYHRLFSISEQKFHLIVDMGYWIQERWVWQFQWRRNWFEWERNQEQSLMDDLRNVILHKNHQDSWIWLLEATGIFSVNSTYNHITTHRSGAEMDSKFKKIWKTRVPPKVQIFVWRLLHKGIPTVENLLKRNIVLGSQELLCVFCKTEVESTPHIICSCPLVDAIWKQWLRSIDCPAPLPHLIEQH---FCFIPASLESKSEVEKWRVIWSATSWCIWRHRNACVFDGEIFNLDKLNKEVLFFAWSWLNILDKSFNYTFSQWSINPGQCI 680
BLAST of PvulFLAVERTChr11.1000520 vs. ExPASy TrEMBL (2024)
Match: tr|A0A0B2SPQ3|A0A0B2SPQ3_GLYSO (Putative ribonuclease H protein (Fragment) OS=Glycine soja OX=3848 GN=glysoja_032641 PE=4 SV=1) HSP 1 Score: 188.734 bits (478), Expect = 4.050e-53 Identity = 107/334 (32.04%), Postives = 168/334 (50.30%), Query Frame = 0 Query: 7 MWKQVLISKYGTEKDRYCNN-KKYPSWWWKDLGKSCGEGEEESWFHVEIGWKVGSGDKVRFWEDAWLGTSL-LSVIYPRLYSVSLDQGRRVSEVGVWEEDIRSWRLRWRRTRFQWEVEQENELLTTVDRVSLSREAKDTLSWRGDSSSMFSVKSAYERI-NQRSGCRPCRVFTQLWQTKAFPNVLVTTWRVLLDKLPTRAYLVRRRVTVPSLLCVMCGSENESTQHLFVTCKVAQRVWDRCLRWVGILYVQHYDLQCHFEQFC---LLQINHKQNCVWKGVWAAVVRCLWEQRNIIVFKQGVVDEEEIFHLAQIKAWLWMKYIMHSFNYTLAEW 334
+W ++L SKYG D + K + S WWKDL K + + + H + W+VG GD+VRFW+D W+G L Y +L+ +S Q +S +G + ++ SW RWRR F +E EQ + + S+ ++ +D + W+ + + ++S KSAY + S + R F L + K P + +WR+ D+LPTRA L+RR V + +C +CG+ E HLF C++ +W + W D HF QFC Q NH + C+W W A+ +W+ RN ++FK + ++ A AW W+K FN W
Sbjct: 30 LWARLLTSKYGGLADLQSSRVKGWHSSWWKDLRKLYHQPDFQI-IHQNMTWRVGCGDRVRFWQDPWIGQGCSLQQKYHQLFFISRQQNLFISNMGNFSQNTWSWDFRWRRNLFDYENEQAIAFMEDISAFSIQQQLQDIMVWKAEPNGLYSTKSAYRLLMPTNSPGQHSRNFQILMKLKIPPRADMFSWRLFRDRLPTRANLLRRNVVLQQTMCPLCGNHQEEAGHLFFHCRMTIGLWWEFMSWTRFKGAFSTDPATHFIQFCEGFGTQRNHNRRCIW---WIALTSTIWQHRNSLLFKGTPFEPPKVLDDALFHAWSWLKVSEKGFNIPFNHW 359
BLAST of PvulFLAVERTChr11.1000520 vs. ExPASy Swiss-Prot (2024)
Match: sp|P0C2F6|RNHX1_ARATH (Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana OX=3702 GN=At1g65750 PE=3 SV=1) HSP 1 Score: 59.3066 bits (142), Expect = 2.048e-8 Identity = 63/246 (25.61%), Postives = 94/246 (38.21%), Query Frame = 0 Query: 3 EEKGMWKQVLISKYGTEKDRYCNNKKYPSWWWKDLGKSCGEGEEESWFHVEIGWKVGSGDKVRFWEDAWLGTSLLSVIYPRLYSVSLDQGRRVSEVG-VWEEDIRSWRLRWRRTRFQWEVEQENELLTTVDRVSLSREAKDTLSWRGDSSSMFSVKSAYERINQRSGCRP--CRVFTQLWQTKAFPNVLVTTWRVLLDKLPTRAYLVRRRVTVPSLLCVMCGSENESTQHLFVTCKVAQRVWDRCL 245
E+ +W VL KY + R + P W +S G + H +GW G G ++RFW D W+ L + LD G R ++ V +D+ W + L + L A+D LSW+ FSV+SAYE + RP F LW+ + V W V + T RR ++ S +C +C ES H+ C +W R +
Sbjct: 124 EKNSLWTLVLQKKYHVGEIRD-SRWLIPKGSWSSTWRSIAIGLRDVVSH-GVGWIPGDGQQIRFWTDRWVSGKPL---------LELDNGERPTDCDTVVAKDLWIPGRGWDFAKIDPYTTNNTRLELRAVVLDLVTGARDRLSWKFSQDGQFSVRSAYEMLTVDEVPRPNMASFFNCLWKVRVPERVKTFLWLVGNQAVMTEEERHRRHLSA-SNVCQVCKGGVESMLHVLRDCPAQLGIWVRVV 357
BLAST of PvulFLAVERTChr11.1000520 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr4:14333528-14335255 FORWARD LENGTH=575) HSP 1 Score: 56.6102 bits (135), Expect = 1.626e-8 Identity = 62/273 (22.71%), Postives = 112/273 (41.03%), Query Frame = 0 Query: 58 VGSGDKVRFWEDAWLGTSLLSVIYPRLYSVSLDQGRRVSEV----GVWEEDIRSWRLRWRRTRFQWEVEQENELLTTVDRVSLSREAKDTLSWRGDSSSMFSVKSAY----ERINQRSGCRPCR------VFTQLWQTKAFPNVLVTTWRVLLDKLPTRAYLVRRRVTVPSLLCVMCGSENESTQHLFVTCKVAQRVWDRCLRWVGILYVQHYDLQCHFEQFCLLQINHKQNCVWKGVWAAVVRC---LWEQRNIIVFKQGVVDEEEIFHLAQ 313
VG+G+ + W WL + S R+ V + VS + + +E R WR F E E +L+ + R D+ +W SS ++VKS Y + IN+RS + ++ ++W+++ P + W+ L + LP L R ++ S C+ C S E+ HL C A+ W + + I + + + + + + N W+ V LW+ RN +VF+ + +E+ A+
Sbjct: 129 VGNGEDIIIWRHKWLDSKPASAAL-RMQRVPPQEYASVSSILKVSDLIDESGREWRKDVIEMLFP---EVERKLIGELR--PGGRRILDSYTWDYTSSGDYTVKSGYWVLTQIINKRSSPQEVSEPSLNPIYQKIWKSQTSPKIQHFLWKCLSNSLPVAGALAYRHLSKES-ACIRCPSCKETVNHLLFKCTFARLTW--AISSIPIPLGGEWADSIYVNLYWVFNLGNG-NPQWEKASQLVPWLLWRLWKNRNELVFRGREFNAQEVLRRAE 391
BLAST of PvulFLAVERTChr11.1000520 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr5:5383597-5384226 REVERSE LENGTH=209) HSP 1 Score: 50.8322 bits (120), Expect = 3.823e-7 Identity = 53/191 (27.75%), Postives = 84/191 (43.98%), Query Frame = 0 Query: 57 KVGSGDKVRFWEDAWLGTSLLSVIYPRLYSVSLDQGRRVSEV---GVWEEDIRS--WRLRWRRTRFQWEVEQENELLTTVDRVSLSREAKDTL-SWR-GDSSSMFSVKSAYERINQRSGCRPCRVFTQLWQTKAFPNVLVTTWRVLLDKLPTRAYLVRRRVTVPSLLCVMCGSENESTQHLFVTCKVAQRV 240
KVGSG FW + W T+L +I+ ++ D G RVS + + +R W + R+R ++ L V+L +A+D L W+ G S + SA I+ +W P +W + +LPTR L+ + VPSL C++C + +E+ QHLF C A +
Sbjct: 28 KVGSGITCNFWSENW--TNLGPLIH-----LTGDLGPRVSGLPRNASVADALRDGVWWINGSRSRNP-IIQLLKNCLPLSSVVNLQVDAEDDLFMWKVGGSEASVGFSSAATWIHLNPVGEKVDWHKAIWFKGRIPKHAFISWVNIRHRLPTRDKLLSWGLHVPSL-CLLCNAFDETRQHLFFDCVFAGEI 209 The following BLAST results are available for this feature:
BLAST of PvulFLAVERTChr11.1000520 vs. ExPASy TrEMBL (2024)
Analysis Date: 2024-08-19 (Blastp of Phaseolus vulgaris cv. Flavert v1.0 proteins vs UniProt TrEMBL) Total hits: 10 Position : 0 Zoom : x 1
BLAST of PvulFLAVERTChr11.1000520 vs. ExPASy Swiss-Prot (2024)
Analysis Date: 2024-08-19 (Blastp of Phaseolus vulgaris cv. Flavert v1.0 proteins vs UniProt Swissprot) Total hits: 1 Position : 0 Zoom : x 1
BLAST of PvulFLAVERTChr11.1000520 vs. Araport11
Analysis Date: 2024-08-19 (Blastp of Phaseolus vulgaris cv. Flavert v1.0 proteins vs arabidopsis Araport11) Total hits: 2 Position : 0 Zoom : x 1
InterPro
Analysis Name: Blastp of Phaseolus vulgaris cv. Flavert v1.0 proteins vs UniProt TrEMBL
Date Performed: 2024-08-19
Analysis Name: InterProScan Analysis for Phaseolus vulgaris cv. Flavert genome v1.0 Date Performed: 2024-08-19 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >drPhaVulg.Flavert.1.0mRNA:PvulFLAVERTChr11.1000520 ID=drPhaVulg.Flavert.1.0mRNA:PvulFLAVERTChr11.1000520; Name=PvulFLAVERTChr11.1000520; organism=Phaseolus vulgaris; type=mRNA; length=1035bpback to top protein sequence of drPhaVulg.Flavert.1.0mRNA:PvulFLAVERTChr11.1000520 >drPhaVulg.Flavert.1.0mRNA:PvulFLAVERTChr11.1000520 ID=drPhaVulg.Flavert.1.0mRNA:PvulFLAVERTChr11.1000520; Name=drPhaVulg.Flavert.1.0mRNA:PvulFLAVERTChr11.1000520; organism=Phaseolus vulgaris; type=polypeptide; length=344bpback to top mRNA from alignment at Chr11:8166995..8168029- Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>drPhaVulg.Flavert.1.0mRNA:PvulFLAVERTChr11.1000520 ID=drPhaVulg.Flavert.1.0mRNA:PvulFLAVERTChr11.1000520; Name=PvulFLAVERTChr11.1000520; organism=Phaseolus vulgaris; type=mRNA; length=1035bp; location=Sequence derived from: Chr11:8166995..8168029- (Phaseolus vulgarisback to top Coding sequence (CDS) from alignment at Chr11:8166995..8168029- >drPhaVulg.Flavert.1.0mRNA:PvulFLAVERTChr11.1000520 ID=drPhaVulg.Flavert.1.0mRNA:PvulFLAVERTChr11.1000520; Name=PvulFLAVERTChr11.1000520; organism=Phaseolus vulgaris; type=CDS; length=1035bp; location=Sequence derived from: Chr11:8166995..8168029- (Phaseolus vulgarisback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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