PvulFLAVERTChr11.1000695

Transcript Overview
NamePvulFLAVERTChr11.1000695
Unique NamedrPhaVulg.Flavert.1.0mRNA:PvulFLAVERTChr11.1000695
TypemRNA
OrganismPhaseolus vulgaris (Common bean)
Sequence length636
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr11chromosomeChr11:14383285..14384002 -Phaseolus vulgaris cv. Flavert genome v1.0n/a
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
PvulFLAVERTChr11.1000695drPhaVulg.Flavert.1.0gene:PvulFLAVERTChr11.1000695Phaseolus vulgarisgene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
drPhaVulg.Flavert.1.0CDS:PvulFLAVERTChr11.1000695.2drPhaVulg.Flavert.1.0CDS:PvulFLAVERTChr11.1000695.2Phaseolus vulgarisCDS
drPhaVulg.Flavert.1.0CDS:PvulFLAVERTChr11.1000695.1drPhaVulg.Flavert.1.0CDS:PvulFLAVERTChr11.1000695.1Phaseolus vulgarisCDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
drPhaVulg.Flavert.1.0exon:PvulFLAVERTChr11.1000695.2drPhaVulg.Flavert.1.0exon:PvulFLAVERTChr11.1000695.2Phaseolus vulgarisexon
drPhaVulg.Flavert.1.0exon:PvulFLAVERTChr11.1000695.1drPhaVulg.Flavert.1.0exon:PvulFLAVERTChr11.1000695.1Phaseolus vulgarisexon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
drPhaVulg.Flavert.1.0mRNA:PvulFLAVERTChr11.1000695drPhaVulg.Flavert.1.0mRNA:PvulFLAVERTChr11.1000695Phaseolus vulgarispolypeptide
drPhaVulg.Flavert.1.0mRNA:PvulFLAVERTChr11.1000695drPhaVulg.Flavert.1.0mRNA:PvulFLAVERTChr11.1000695-proteinPhaseolus vulgarispolypeptide


Homology
BLAST of PvulFLAVERTChr11.1000695 vs. ExPASy TrEMBL (2024)
Match: tr|G8DCX3|G8DCX3_PHAVU (Putative retrotransposon OS=Phaseolus vulgaris OX=3885 PE=4 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 1.025e-67
Identity = 113/201 (56.22%), Postives = 133/201 (66.17%), Query Frame = 0
Query:    2 SIPFKYLGLEVGGNPRKKQFWEPVINKVSARLSTWKGRILSMAGRVCLLKSVFTAIPLFYLSFFKAPISVCNRIISIQRKFLWAWGRDNRSIAWVRWEDVCKPLEDGGLGVKDVRIFNNALLAKWKWRLMNDERGKWKDILDSKYGSEVGRSHTRLKWQSWWWRDLSKACGEG-EDEWFQKSVVWKVGDGGNVKFWEDAWV 201
             +PFKYLGLEV GNPRKKQFWEP+++K++A+LS WKGR LSMAGR+CL+K V T +PLFYLSFFKAP+SV NRI SIQR+FLW W RD R I+                               WKWRL N+E GK KDIL SKYG + G+     K+QSWWWRDLSK  GE  E  W QK++ WKVG G   +FWED WV
Sbjct:   24 EVPFKYLGLEVRGNPRKKQFWEPIVSKINAKLSVWKGRFLSMAGRICLIKLVITVVPLFYLSFFKAPVSVYNRIASIQRRFLWGWARDKRPIS-------------------------------WKWRLANNEEGKLKDILVSKYGVDFGQRQIHQKFQSWWWRDLSKVSGEDYEVGWVQKTLCWKVGYGNKARFWEDTWV 193          
BLAST of PvulFLAVERTChr11.1000695 vs. ExPASy TrEMBL (2024)
Match: tr|G8DCX0|G8DCX0_PHAVU (Putative retrotransposon OS=Phaseolus vulgaris OX=3885 PE=4 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 1.239e-63
Identity = 109/202 (53.96%), Postives = 140/202 (69.31%), Query Frame = 0
Query:    1 MSIPFKYLGLEVGGNPRKKQFWEPVINKVSARLSTWKGRILSMAGRVCLLKSVFTAIPLFYLSFFKAPISVCNRIISIQRKFLWAWGRDNRSIAWVRWEDVCKPLEDGGLGVKDVRIFNNALLAKWKWRLMNDERGKWKDILDSKYGSEVGRSHTRLKWQSWWWRDLSKACGEGEDE-WFQKSVVWKVGDGGNVKFWEDAWV 201
            M +PFKYLGLEVGGNPRKKQFWEPV+NK+ ARLS WKGR                           AP+SVC RIISIQ +FLW WG+ ++ IAW  W+DVC+P E+GGLG +++R+FN ALLAKW+WR +++E+G+WK +L+SKY   +  S T +K QSWWWRDLSK C EG  + WFQ+ + W++G G  VKF E+ WV
Sbjct: 1237 MEVPFKYLGLEVGGNPRKKQFWEPVLNKLKARLSAWKGR---------------------------APVSVCKRIISIQTRFLWDWGKLSKPIAWASWKDVCRPKEEGGLGCRNIRLFNQALLAKWRWRCVSEEKGRWKTLLESKYNLGIDSSQTPVKSQSWWWRDLSKMCKEGGGKGWFQEELGWEIGYGDKVKFSEEVWV 1411          
BLAST of PvulFLAVERTChr11.1000695 vs. ExPASy TrEMBL (2024)
Match: tr|A0A151QR03|A0A151QR03_CAJCA (Transposon TX1 uncharacterized OS=Cajanus cajan OX=3821 GN=KK1_046538 PE=4 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 8.781e-61
Identity = 104/204 (50.98%), Postives = 142/204 (69.61%), Query Frame = 0
Query:    2 SIPFKYLGLEVGGNPRKKQFWEPVINKVSARLSTWKGRILSMAGRVCLLKSVFTAIPLFYLSFFKAPISVCNRIISIQRKFLWAWGRDNRSIAWVRWEDVCKPLEDGGLGVKDVRIFNNALLAKWKWRLMNDERGKWKDILDSKYGSE---VGRSHTRLKWQSWWWRDLSKACG-EGEDEWFQKSVVWKVGDGGNVKFWEDAWV 201
             +PF YLG+ +G +PR+ + W P+I+K + +L+ WK + LSMAGRVCL+ SV T++PLFY SFF+AP +V  +I+SIQRKFLW +  D R IAWVRWE V +P E+GGLG+K++  FN ALLAKW+W L ++    W  +L SKYG +   +  S+ + K  S WWRD+ KACG + ED+WF KS  WK+G+G    FW D W 
Sbjct:  637 QLPFNYLGIPLGADPRRIETWRPIISKYNKKLAKWKHKSLSMAGRVCLINSVLTSLPLFYFSFFRAPKTVVKQIVSIQRKFLWGYSEDIRKIAWVRWEKVTRPKEEGGLGIKNIATFNVALLAKWRWNLFHNPDSMWARVLLSKYGVDRPNLCTSYNKTK-ASIWWRDVLKACGADNEDKWFDKSKDWKMGEGKQTLFWLDRWT 839          
BLAST of PvulFLAVERTChr11.1000695 vs. ExPASy TrEMBL (2024)
Match: tr|A0A151SK44|A0A151SK44_CAJCA (Ribonuclease H protein At1g65750 family OS=Cajanus cajan OX=3821 GN=KK1_001337 PE=4 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 3.938e-60
Identity = 98/208 (47.12%), Postives = 139/208 (66.83%), Query Frame = 0
Query:    1 MSIPFKYLGLEVGGNPRKKQFWEPVINKVSARLSTWKGRILSMAGRVCLLKSVFTAIPLFYLSFFKAPISVCNRIISIQRKFLWAWGRDNRSIAWVRWEDVCKPLEDGGLGVKDVRIFNNALLAKWKWRLMNDERGKWKDILDSKYGSEVGRSH-TRLKWQSWWWRDLSKAC-GEGEDEWFQKSVVWKVGDGGNVKFWEDAWVHGRVM 206
            + IPF YLGL +G NPR+K  W+ VI+K+  RL+ WK ++LSMAGRVCL+ SV +++PLFY SF+K P +V   + SIQRKFLW   +D R +AWV W+ +C+    GGLG+KD+ +FN++LLAKW+W + +D    W  +L+SKYG  V        K  S WWRDL + C G+  ++WF K + WKV +G   +FWED W+  + +
Sbjct:   13 LDIPFTYLGLPIGDNPRRKVMWKHVIHKLQKRLARWKNKLLSMAGRVCLINSVLSSLPLFYFSFYKMPRTVQKEVESIQRKFLWGEEQDQRKVAWVSWDKICRKKSQGGLGIKDLSLFNDSLLAKWRWNMYHDTSNLWVRVLESKYGGWVKLIEGDNKKDYSMWWRDLRRVCGGDCSEQWFDKCMNWKVKNGKRTRFWEDKWIGQQTL 220          
BLAST of PvulFLAVERTChr11.1000695 vs. ExPASy TrEMBL (2024)
Match: tr|A0A445GIM7|A0A445GIM7_GLYSO (Transposon TX1 149 kDa protein OS=Glycine soja OX=3848 GN=D0Y65_043707 PE=4 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 1.865e-59
Identity = 98/207 (47.34%), Postives = 131/207 (63.29%), Query Frame = 0
Query:    1 MSIPFKYLGLEVGGNPRKKQFWEPVINKVSARLSTWKGRILSMAGRVCLLKSVFTAIPLFYLSFFKAPISVCNRIISIQRKFLWAWGRDNRSIAWVRWEDVCKPLEDGGLGVKDVRIFNNALLAKWKWRLMNDERGKWKDILDSKYGS-----EVGRSHTRLKWQSWWWRDLSKACGEGEDEW-FQKSVVWKVGDGGNVKFWEDAWV 201
            + +PF YLG+ +G NPR+ + W+P+I K   RL+ WK R +S  GRV L++SV T+IP++Y SFF+ P SV NR+I +QR FLW  G+D++ IAW+ WE VC P   GGLG+KD+  FN ALL KW W LM  +   W  +L++KYG      E GR++T    QS WWRDL +A          Q+   WKV  G  VKFWED W+
Sbjct:  706 LVLPFIYLGIPIGANPRRARVWDPIIQKCERRLARWKQRFISFGGRVALIQSVLTSIPIYYFSFFRVPKSVINRLIKLQRSFLWGGGQDSKKIAWIAWEKVCLPKHKGGLGIKDILTFNLALLGKWMWNLMQHQGSLWVAVLEAKYGGWRGLLEDGRANT----QSIWWRDLKRAVQHSHHGISLQQQFKWKVEAGDKVKFWEDRWI 908          
BLAST of PvulFLAVERTChr11.1000695 vs. ExPASy TrEMBL (2024)
Match: tr|A0A151SR66|A0A151SR66_CAJCA (Ribonuclease H protein At1g65750 family OS=Cajanus cajan OX=3821 GN=KK1_003517 PE=4 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 8.903e-59
Identity = 97/203 (47.78%), Postives = 129/203 (63.55%), Query Frame = 0
Query:    1 MSIPFKYLGLEVGGNPRKKQFWEPVINKVSARLSTWKGRILSMAGRVCLLKSVFTAIPLFYLSFFKAPISVCNRIISIQRKFLWAWGRDNRSIAWVRWEDVCKPLEDGGLGVKDVRIFNNALLAKWKWRLMNDERGKWKDILDSKYGSEVGR-SHTRLKWQSWWWRDLSKACGEGE-DEWFQKSVVWKVGDGGNVKFWEDAWV 201
            +S PF YLG+ +G NPRKK  W P++ K+  +LS+WK ++LSMAGRVCLL SV T++PL +LSFF+ P SV   I+S+QR FLW    D R I W+ W+ V  P + GGLGVK++  FN ALLAKW+W L +     W  +L S+YG      + +  +  S WWRDL   CG  E D WF + V W +G G  V+FW D W+
Sbjct:  149 LSFPFTYLGIPIGANPRKKDTWRPIVIKIQKKLSSWKCKVLSMAGRVCLLNSVLTSLPLLFLSFFRIPPSVSKEIVSLQRNFLWGCKEDQRKICWISWDRVTLPKKMGGLGVKNIIRFNMALLAKWRWSLFHQNDSLWARVLYSRYGGGTNLCAQSSSRRDSLWWRDLVVVCGGLEQDNWFDRKVKWSIGSGSRVRFWLDKWI 351          
BLAST of PvulFLAVERTChr11.1000695 vs. ExPASy TrEMBL (2024)
Match: tr|A0A151SVE8|A0A151SVE8_CAJCA (Ribonuclease H protein At1g65750 family OS=Cajanus cajan OX=3821 GN=KK1_014207 PE=4 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 1.409e-58
Identity = 88/197 (44.67%), Postives = 133/197 (67.51%), Query Frame = 0
Query:    1 MSIPFKYLGLEVGGNPRKKQFWEPVINKVSARLSTWKGRILSMAGRVCLLKSVFTAIPLFYLSFFKAPISVCNRIISIQRKFLWAWGRDNRSIAWVRWEDVCKPLEDGGLGVKDVRIFNNALLAKWKWRLMNDERGKWKDILDSKYGS-EVGRSHTRLKWQSWWWRDLSKACGEG-EDEWFQKSVVWKVGDGGNVKF 195
            +  PF+YLG+ +G NPRK   W P+++K+  +L+ WK +++SMAGRVC++  V TA+PL+++ FFK P  V N II IQR +LW    D+R +AWV W+ +C+P ++GGLG+K++++FN +LL KW+W L + +   W +IL SKYG  E+         +S WWRDL K CG G E  WF +S+ W++G G  ++F
Sbjct:  152 LHFPFRYLGIPIGDNPRKSTMWRPILDKIINKLAPWKDKLISMAGRVCIINFVLTALPLYFIPFFKMPKKVVNNIIKIQRAYLWGGEEDSRKVAWVSWDKICRPKQNGGLGIKNIKLFNESLLGKWRWNLFHQQGKLWANILKSKYGGWEILGGAEDGHNESIWWRDLKKICGGGAESSWFARSLRWRLGKGEKIRF 348          
BLAST of PvulFLAVERTChr11.1000695 vs. ExPASy TrEMBL (2024)
Match: tr|A0A151TV75|A0A151TV75_CAJCA (Ribonuclease H protein At1g65750 family OS=Cajanus cajan OX=3821 GN=KK1_010134 PE=4 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 9.411e-58
Identity = 96/211 (45.50%), Postives = 132/211 (62.56%), Query Frame = 0
Query:    1 MSIPFKYLGLEVGGNPRKKQFWEPVINKVSARLSTWKGRILSMAGRVCLLKSVFTAIPLFYLSFFKAPISVCNRIISIQRKFLWAWGRDNRSIAWVRWEDVCKPLEDGGLGVKDVRIFNNALLAKWKWRLMNDERGKWKDILDSKYGSEVGR-SHTRLKWQSWWWRDLSKACGEG-EDEWFQKSVVWKVGDGGNVKFWEDAWVHGRVMDGS 209
            + IPF YLG+ +G NPRK+  W+P++ K   +LSTW  + LSMAGR CL+ SV T++PLFYLSF+K P  V  ++ SIQR+FLW      + I+W+ W+ + +P E GGLG+K++ +FN ALLAKW+W L +     W  ++ SKYG      S         WWRDL K CG G ED WF + + WK+GDG  V+FW D WV    +  +
Sbjct:  140 IQIPFIYLGMPIGANPRKETMWQPIVLKARKKLSTWSSKTLSMAGRACLINSVLTSLPLFYLSFYKIPKKVERKLKSIQRRFLWGCKEGEQKISWISWDKLTQPKEYGGLGIKNITMFNEALLAKWRWNLFHYPNTLWSRVVRSKYGGCANLCSEATTNSDYIWWRDLLKVCGSGSEDRWFDRLIKWKIGDGTKVRFWLDNWVGDECLANT 350          
BLAST of PvulFLAVERTChr11.1000695 vs. ExPASy TrEMBL (2024)
Match: tr|A0A392NLI2|A0A392NLI2_9FABA (LINE-1 reverse transcriptase like OS=Trifolium medium OX=97028 PE=4 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 1.117e-57
Identity = 94/207 (45.41%), Postives = 132/207 (63.77%), Query Frame = 0
Query:    3 IPFKYLGLEVGGNPRKKQFWEPVINKVSARLSTWKGRILSMAGRVCLLKSVFTAIPLFYLSFFKAPISVCNRIISIQRKFLWAWGRDNRSIAWVRWEDVCKPLEDGGLGVKDVRIFNNALLAKWKWRLMNDERGKWKDILDSKYGSEVGR-----SHTRLKWQSWWWRDLS---KACGEGEDEWFQKSVVWKVGDGGNVKFWEDAWV 201
            IPF YLGL VG NPRK+  WEPVI  +  RL++WK R +S+ GRV L+ SV  AIP+FYLSF K PI V  RI++IQR FLW        +AWV+W DVC+P E GGLG++++R+ N +LL KW+WRL+  +   W  +L +KYG ++       S   +K+ S WW+DL    +     + +W    ++ K+G+GGN +FW D W+
Sbjct:   15 IPFIYLGLPVGANPRKEATWEPVIEVLHNRLNSWKNRFVSLGGRVILINSVLAAIPIFYLSFMKMPIKVWKRIVAIQRNFLWGGANKKTKLAWVKWVDVCRPKERGGLGIRNLRLVNVSLLTKWRWRLLTSQDMFWVKVLKAKYGGDIAHVSNLSSCGDVKFASLWWKDLCSLGRMVPSDDGDWCSDIMIKKLGNGGNTRFWHDLWM 221          
BLAST of PvulFLAVERTChr11.1000695 vs. ExPASy TrEMBL (2024)
Match: tr|A0A151RPT9|A0A151RPT9_CAJCA (Ribonuclease H protein At1g65750 family OS=Cajanus cajan OX=3821 GN=KK1_033987 PE=4 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 2.020e-57
Identity = 97/203 (47.78%), Postives = 129/203 (63.55%), Query Frame = 0
Query:    1 MSIPFKYLGLEVGGNPRKKQFWEPVINKVSARLSTWKGRILSMAGRVCLLKSVFTAIPLFYLSFFKAPISVCNRIISIQRKFLWAWGRDNRSIAWVRWEDVCKPLEDGGLGVKDVRIFNNALLAKWKWRLMNDERGKWKDILDSKYGSEVGR-SHTRLKWQSWWWRDLSKACGEGE-DEWFQKSVVWKVGDGGNVKFWEDAWV 201
            +S PF YLG+ +G NPRKK  W P++ K+  +LS+WK ++LSMAGRVCLL SV T++PL +LSFF+ P SV   I+S+QR FLW    D R I W+ W+ V  P + GGLGVK++  FN ALLAKW+W L +     W  +L S+YG      + +  +  S WWRDL   CG  E D WF + V W +G G  V+FW D W+
Sbjct:   90 LSFPFTYLGIPIGANPRKKDTWRPIVIKIQKKLSSWKCKVLSMAGRVCLLNSVLTSLPLLFLSFFRIPPSVSKEIVSLQRNFLWGCKEDQRKICWISWDRVTLPKKMGGLGVKNIIRFNMALLAKWRWSLFHQNDSLWARVLYSRYGGGTNLCAQSSSRRDSLWWRDLVVVCGGLEQDNWFDRKVKWSIGSGSRVRFWLDKWI 292          
BLAST of PvulFLAVERTChr11.1000695 vs. ExPASy Swiss-Prot (2024)
Match: sp|P0C2F6|RNHX1_ARATH (Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana OX=3702 GN=At1g65750 PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 2.745e-27
Identity = 62/192 (32.29%), Postives = 102/192 (53.12%), Query Frame = 0
Query:   19 KQFWEPVINKVSARLSTWKGRILSMAGRVCLLKSVFTAIPLFYLSFFKAPISVCNRIISIQRKFLWAWGRDNRSIAWVRWEDVCKPLEDGGLGVKDVRIFNNALLAKWKWRLMNDERGKWKDILDSKYG-SEVGRSH---TRLKWQSWWWRDLSKACGEGEDEWFQKSVVWKVGDGGNVKFWEDAWVHGRVM 206
            K  +  ++ +VS+R+S W+ + LS AGR+ L K+V +++P+  +S    P S+ NR+  + R FLW    + +    V+W  VC P ++GGLGV+  +  N AL++K  WRL+ ++   W  +L  KY   E+  S     +  W S W     ++   G  +     V W  GDG  ++FW D WV G+ +
Sbjct:   10 KDTFGEILERVSSRMSGWREKTLSFAGRLTLTKAVLSSMPVHSMSTILLPQSILNRLDQLSRTFLWGSTAEKKKQHLVKWSKVCSPKKEGGLGVRAAKSMNRALISKVGWRLLQEKNSLWTLVLQKKYHVGEIRDSRWLIPKGSWSSTW-----RSIAIGLRDVVSHGVGWIPGDGQQIRFWTDRWVSGKPL 196          
BLAST of PvulFLAVERTChr11.1000695 vs. ExPASy Swiss-Prot (2024)
Match: sp|P93295|M310_ARATH (Uncharacterized mitochondrial protein AtMg00310 OS=Arabidopsis thaliana OX=3702 GN=AtMg00310 PE=4 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.993e-16
Identity = 44/148 (29.73%), Postives = 76/148 (51.35%), Query Frame = 0
Query:   56 AIPLFYLSFFKAPISVCNRIISIQRKFLWAWGRDNRSIAWVRWEDVCKPLE-DGGLGVKDVRIFNNALLAKWKWRLMNDERGKWKDILDSKYGSEVGRSHTRLKWQ-SWWWRDLSKACGEGEDEWFQKSVVWKVGDGGNVKFWEDAWV 201
            A+P++ +S F+    +C ++ S   +F W+   + R I+WV W+ +CK  E DGGLG +D+  FN ALLAK  +R+++        +L S+Y          +  + S+ WR +         E   + ++  +GDG + K W D W+
Sbjct:    2 ALPVYAMSCFRLSKLLCKKLTSAMTEFWWSSCENKRKISWVAWQKLCKSKEDDGGLGFRDLGWFNQALLAKQSFRIIHQPHTLLSRLLRSRYFPHSSMMECSVGTRPSYAWRSIIHG-----RELLSRGLLRTIGDGIHTKVWLDRWI 144          
BLAST of PvulFLAVERTChr11.1000695 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr3:8789471-8790907 FORWARD LENGTH=478)

HSP 1 Score: 95.1301 bits (235), Expect = 1.412e-22
Identity = 66/216 (30.56%), Postives = 105/216 (48.61%), Query Frame = 0
Query:    2 SIPFKYLGLEVGGNPRKKQFWEPVINKVSARLSTWKGRILSMAGRVCLLKSVFTAIPLFYLSFFKAPISVCNRIISIQRKFLWAWGRDNRSIAWVRWEDVCKPLEDGGLGVKDVRIFNNALLAKWKWRLMNDER--GKWKDILDSKYGS--EVGRSHTRLKWQSWWWRDLSK--ACGEGEDEWFQKSVVWKVGDGGNVKFWEDAWVH-GRVMDGSG 210
            ++P +YLGL +         + P++ K+  R+  W  R LS AGR+ L+ SV  ++  F++S F+ P +    I SI   FLW+    N   A V W DVC P ++GGLG++ ++  N   L K  WR+++      +W  +   + GS   +  + T     SW W+ + K  A   G        V   + +G N  FW D W   GR++D +G
Sbjct:   22 ALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISSVIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGIRSLKEANKVSLLKLIWRMLSSTSLWVQWLRLYLLRKGSFWSISGNTT---LGSWMWKKILKHRALASG-------FVKHDIHNGSNTSFWFDNWSKIGRLIDVTG 227          
BLAST of PvulFLAVERTChr11.1000695 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr3:8789309-8790907 FORWARD LENGTH=532)

HSP 1 Score: 95.1301 bits (235), Expect = 1.550e-22
Identity = 66/216 (30.56%), Postives = 105/216 (48.61%), Query Frame = 0
Query:    2 SIPFKYLGLEVGGNPRKKQFWEPVINKVSARLSTWKGRILSMAGRVCLLKSVFTAIPLFYLSFFKAPISVCNRIISIQRKFLWAWGRDNRSIAWVRWEDVCKPLEDGGLGVKDVRIFNNALLAKWKWRLMNDER--GKWKDILDSKYGS--EVGRSHTRLKWQSWWWRDLSK--ACGEGEDEWFQKSVVWKVGDGGNVKFWEDAWVH-GRVMDGSG 210
            ++P +YLGL +         + P++ K+  R+  W  R LS AGR+ L+ SV  ++  F++S F+ P +    I SI   FLW+    N   A V W DVC P ++GGLG++ ++  N   L K  WR+++      +W  +   + GS   +  + T     SW W+ + K  A   G        V   + +G N  FW D W   GR++D +G
Sbjct:   76 ALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISSVIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGIRSLKEANKVSLLKLIWRMLSSTSLWVQWLRLYLLRKGSFWSISGNTT---LGSWMWKKILKHRALASG-------FVKHDIHNGSNTSFWFDNWSKIGRLIDVTG 281          
BLAST of PvulFLAVERTChr11.1000695 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr3:8789309-8790907 FORWARD LENGTH=532)

HSP 1 Score: 95.1301 bits (235), Expect = 1.550e-22
Identity = 66/216 (30.56%), Postives = 105/216 (48.61%), Query Frame = 0
Query:    2 SIPFKYLGLEVGGNPRKKQFWEPVINKVSARLSTWKGRILSMAGRVCLLKSVFTAIPLFYLSFFKAPISVCNRIISIQRKFLWAWGRDNRSIAWVRWEDVCKPLEDGGLGVKDVRIFNNALLAKWKWRLMNDER--GKWKDILDSKYGS--EVGRSHTRLKWQSWWWRDLSK--ACGEGEDEWFQKSVVWKVGDGGNVKFWEDAWVH-GRVMDGSG 210
            ++P +YLGL +         + P++ K+  R+  W  R LS AGR+ L+ SV  ++  F++S F+ P +    I SI   FLW+    N   A V W DVC P ++GGLG++ ++  N   L K  WR+++      +W  +   + GS   +  + T     SW W+ + K  A   G        V   + +G N  FW D W   GR++D +G
Sbjct:   76 ALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISSVIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGIRSLKEANKVSLLKLIWRMLSSTSLWVQWLRLYLLRKGSFWSISGNTT---LGSWMWKKILKHRALASG-------FVKHDIHNGSNTSFWFDNWSKIGRLIDVTG 281          
BLAST of PvulFLAVERTChr11.1000695 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr3:8789309-8793208 FORWARD LENGTH=828)

HSP 1 Score: 95.1301 bits (235), Expect = 2.175e-22
Identity = 66/216 (30.56%), Postives = 105/216 (48.61%), Query Frame = 0
Query:    2 SIPFKYLGLEVGGNPRKKQFWEPVINKVSARLSTWKGRILSMAGRVCLLKSVFTAIPLFYLSFFKAPISVCNRIISIQRKFLWAWGRDNRSIAWVRWEDVCKPLEDGGLGVKDVRIFNNALLAKWKWRLMNDER--GKWKDILDSKYGS--EVGRSHTRLKWQSWWWRDLSK--ACGEGEDEWFQKSVVWKVGDGGNVKFWEDAWVH-GRVMDGSG 210
            ++P +YLGL +         + P++ K+  R+  W  R LS AGR+ L+ SV  ++  F++S F+ P +    I SI   FLW+    N   A V W DVC P ++GGLG++ ++  N   L K  WR+++      +W  +   + GS   +  + T     SW W+ + K  A   G        V   + +G N  FW D W   GR++D +G
Sbjct:   76 ALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISSVIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGIRSLKEANKVSLLKLIWRMLSSTSLWVQWLRLYLLRKGSFWSISGNTT---LGSWMWKKILKHRALASG-------FVKHDIHNGSNTSFWFDNWSKIGRLIDVTG 281          
BLAST of PvulFLAVERTChr11.1000695 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr3:8789471-8793208 FORWARD LENGTH=746)

HSP 1 Score: 85.1149 bits (209), Expect = 5.234e-19
Identity = 46/144 (31.94%), Postives = 72/144 (50.00%), Query Frame = 0
Query:    2 SIPFKYLGLEVGGNPRKKQFWEPVINKVSARLSTWKGRILSMAGRVCLLKSVFTAIPLFYLSFFKAPISVCNRIISIQRKFLWAWGRDNRSIAWVRWEDVCKPLEDGGLGVKDVRIFN---------NALLAKWKWRLMNDERG 136
            ++P +YLGL +         + P++ K+  R+  W  R LS AGR+ L+ SV  ++  F++S F+ P +    I SI   FLW+    N   A V W DVC P ++GGLG++ ++  N         N  L  W W+ +   R 
Sbjct:   22 ALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISSVIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGIRSLKEANKGSFWSISGNTTLGSWMWKKILKHRA 165          
BLAST of PvulFLAVERTChr11.1000695 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr4:14333528-14335255 FORWARD LENGTH=575)

HSP 1 Score: 63.1586 bits (152), Expect = 1.962e-11
Identity = 37/155 (23.87%), Postives = 71/155 (45.81%), Query Frame = 0
Query:   56 AIPLFYLSFFKAPISVCNRIISIQRKFLWAWGRDNRSIAWVRWEDVCKPLEDGGLGVKDVRIFNNALLAKWKWRLMNDERGKWKDILDSKYGSEVGRSHTRL-KWQSWWWRDLSKACGEGEDEWFQKSVVWKVGDGGNVKFWEDAWVHGRVMDGS 209
            A+P + ++ F  P +VC +IIS+   F W   ++ + + W  W+ +     +GG+G KD+  FN ALL K  WR+++        +  S+Y  +    +  L    S+ W+ +         E  ++     VG+G ++  W   W+  +    +
Sbjct:    2 ALPTYTMACFLLPKTVCKQIISVLADFWWRNKQEAKGMHWKAWDHLSCYKAEGGIGFKDIEAFNLALLGKQMWRMLSRPESLMAKVFKSRYFHKSDPLNAPLGSRPSFVWKSI-----HASQEILRQGARAVVGNGEDIIIWRHKWLDSKPASAA 151          
The following BLAST results are available for this feature:
BLAST of PvulFLAVERTChr11.1000695 vs. ExPASy TrEMBL (2024)
Analysis Date: 2024-08-19 (Blastp of Phaseolus vulgaris cv. Flavert v1.0 proteins vs UniProt TrEMBL)
Total hits: 10
Match NameE-valueIdentityDescription
tr|G8DCX3|G8DCX3_PHAVU1.025e-6756.22Putative retrotransposon OS=Phaseolus vulgaris OX=... [more]
tr|G8DCX0|G8DCX0_PHAVU1.239e-6353.96Putative retrotransposon OS=Phaseolus vulgaris OX=... [more]
tr|A0A151QR03|A0A151QR03_CAJCA8.781e-6150.98Transposon TX1 uncharacterized OS=Cajanus cajan OX... [more]
tr|A0A151SK44|A0A151SK44_CAJCA3.938e-6047.12Ribonuclease H protein At1g65750 family OS=Cajanus... [more]
tr|A0A445GIM7|A0A445GIM7_GLYSO1.865e-5947.34Transposon TX1 149 kDa protein OS=Glycine soja OX=... [more]
tr|A0A151SR66|A0A151SR66_CAJCA8.903e-5947.78Ribonuclease H protein At1g65750 family OS=Cajanus... [more]
tr|A0A151SVE8|A0A151SVE8_CAJCA1.409e-5844.67Ribonuclease H protein At1g65750 family OS=Cajanus... [more]
tr|A0A151TV75|A0A151TV75_CAJCA9.411e-5845.50Ribonuclease H protein At1g65750 family OS=Cajanus... [more]
tr|A0A392NLI2|A0A392NLI2_9FABA1.117e-5745.41LINE-1 reverse transcriptase like OS=Trifolium med... [more]
tr|A0A151RPT9|A0A151RPT9_CAJCA2.020e-5747.78Ribonuclease H protein At1g65750 family OS=Cajanus... [more]
back to top
BLAST of PvulFLAVERTChr11.1000695 vs. ExPASy Swiss-Prot (2024)
Analysis Date: 2024-08-19 (Blastp of Phaseolus vulgaris cv. Flavert v1.0 proteins vs UniProt Swissprot)
Total hits: 2
Match NameE-valueIdentityDescription
sp|P0C2F6|RNHX1_ARATH2.745e-2732.29Putative ribonuclease H protein At1g65750 OS=Arabi... [more]
sp|P93295|M310_ARATH1.993e-1629.73Uncharacterized mitochondrial protein AtMg00310 OS... [more]
back to top
BLAST of PvulFLAVERTChr11.1000695 vs. Araport11
Analysis Date: 2024-08-19 (Blastp of Phaseolus vulgaris cv. Flavert v1.0 proteins vs arabidopsis Araport11)
Total hits: 6
Match NameE-valueIdentityDescription
|1.412e-2230.56Symbols: no symbol available | no full name availa... [more]
|1.550e-2230.56Symbols: no symbol available | no full name availa... [more]
|1.550e-2230.56Symbols: no symbol available | no full name availa... [more]
|2.175e-2230.56Symbols: no symbol available | no full name availa... [more]
|5.234e-1931.94Symbols: no symbol available | no full name availa... [more]
|1.962e-1123.87Symbols: no symbol available | no full name availa... [more]
back to top
InterPro
Analysis Name: Blastp of Phaseolus vulgaris cv. Flavert v1.0 proteins vs UniProt TrEMBL
Date Performed: 2024-08-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33116REVERSE TRANSCRIPTASE ZINC-BINDING DOMAIN-CONTAINING PROTEIN-RELATED-RELATEDcoord: 5..201

Analysis Name: InterProScan Analysis for Phaseolus vulgaris cv. Flavert genome v1.0
Date Performed: 2024-08-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33116REVERSE TRANSCRIPTASE ZINC-BINDING DOMAIN-CONTAINING PROTEIN-RELATED-RELATEDcoord: 5..201

Sequences
The following sequences are available for this feature:

mRNA sequence

>drPhaVulg.Flavert.1.0mRNA:PvulFLAVERTChr11.1000695 ID=drPhaVulg.Flavert.1.0mRNA:PvulFLAVERTChr11.1000695; Name=PvulFLAVERTChr11.1000695; organism=Phaseolus vulgaris; type=mRNA; length=636bp
ATGTCAATCCCTTTTAAATATTTGGGATTAGAAGTAGGAGGCAACCCAAG
GAAGAAACAGTTTTGGGAACCAGTTATAAACAAAGTCAGTGCCAGACTTA
GTACTTGGAAGGGGAGAATTTTGTCTATGGCAGGAAGAGTATGCTTACTT
AAATCGGTGTTTACCGCTATACCTCTCTTCTACTTGTCCTTCTTTAAAGC
ACCAATTTCAGTCTGTAACAGAATTATCAGTATACAGAGGAAGTTCCTTT
GGGCCTGGGGCAGAGATAACAGGTCTATAGCTTGGGTAAGATGGGAGGAT
GTGTGTAAACCCCTTGAGGACGGAGGGCTAGGGGTCAAAGATGTCAGAAT
TTTTAATAATGCTTTGCTGGCGAAATGGAAATGGCGACTGATGAATGATG
AAAGAGGGAAGTGGAAAGACATTCTTGATTCTAAGTATGGTTCAGAAGTA
GGGAGAAGTCATACACGCTTGAAATGgcaatcttggtggtggagagatct
tTCTAAAGCTTGTGGGGAGGGTGAAGATGAATGGTTCCAAAAGTCTGTTG
TGTGGAAAGTTGGTGATGGAGGCAATGTAAAATTCTGGGAAGATGCGTGG
GTACATGGGAGAGTTATGGATGGCAGTGGCGGCTAA
back to top

protein sequence of drPhaVulg.Flavert.1.0mRNA:PvulFLAVERTChr11.1000695

>drPhaVulg.Flavert.1.0mRNA:PvulFLAVERTChr11.1000695 ID=drPhaVulg.Flavert.1.0mRNA:PvulFLAVERTChr11.1000695; Name=drPhaVulg.Flavert.1.0mRNA:PvulFLAVERTChr11.1000695; organism=Phaseolus vulgaris; type=polypeptide; length=211bp
MSIPFKYLGLEVGGNPRKKQFWEPVINKVSARLSTWKGRILSMAGRVCLL
KSVFTAIPLFYLSFFKAPISVCNRIISIQRKFLWAWGRDNRSIAWVRWED
VCKPLEDGGLGVKDVRIFNNALLAKWKWRLMNDERGKWKDILDSKYGSEV
GRSHTRLKWQSWWWRDLSKACGEGEDEWFQKSVVWKVGDGGNVKFWEDAW
VHGRVMDGSGG
back to top

mRNA from alignment at Chr11:14383285..14384002-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>drPhaVulg.Flavert.1.0mRNA:PvulFLAVERTChr11.1000695 ID=drPhaVulg.Flavert.1.0mRNA:PvulFLAVERTChr11.1000695; Name=PvulFLAVERTChr11.1000695; organism=Phaseolus vulgaris; type=mRNA; length=718bp; location=Sequence derived from: Chr11:14383285..14384002- (Phaseolus vulgaris
ATGTCAATCCCTTTTAAATATTTGGGATTAGAAGTAGGAGGCAACCCAAG GAAGAAACAGTTTTGGGAACCAGTTATAAACAAAGTCAGTGCCAGACTTA GTACTTGGAAGGGGAGAATTTTGTCTATGGCAGGAAGAGTATGCTTACTT AAATCGGTGTTTACCGCTATACCTCTCTTCTACTTGTCCTTCTTTAAAGC ACCAATTTCAGTCTGTAACAGAATTATCAGTATACAGAGGAAGTTCCTTT GGGCCTGGGGCAGAGATAACAGGTCTATAGCTTGGGTAAGATGGGAGGAT GTGTGTAAACCCCTTGAGGACGGAGGGCTAGGGGTCAAAGATGTCAGAAT TTTTAATAATGCTTTGCTGGCGAAATGGAAATGGCGACTGATGAATGATG AAAGAGGGAAGTGGAAAGACATTCTTGATTCTAAGTATGGTTCAGAAGTA GGGAGAAGTCATACACGCTTGAAATGGCAATCTTGGTGGTGGAGAGATCT TTCTAAAGCTTGTGGGGAGGGTGAAGATGAATGGTTCCAAAAGTCTGTTG TGTGGAAAGTTGGTGATGGAGGCAATGTAAAATTCTGGGAAGATGCGTGG GTTACTAACAATAATCTCAAATCTATGTACCCTAGACTTTTTTCTCTCTC TATGGATCAAGGTATGAAGGTGGGAGAGGTAGGTACATGGGAGAGTTATG GATGGCAGTGGCGGCTAA
back to top

Coding sequence (CDS) from alignment at Chr11:14383285..14384002-

>drPhaVulg.Flavert.1.0mRNA:PvulFLAVERTChr11.1000695 ID=drPhaVulg.Flavert.1.0mRNA:PvulFLAVERTChr11.1000695; Name=PvulFLAVERTChr11.1000695; organism=Phaseolus vulgaris; type=CDS; length=636bp; location=Sequence derived from: Chr11:14383285..14384002- (Phaseolus vulgaris
ATGTCAATCCCTTTTAAATATTTGGGATTAGAAGTAGGAGGCAACCCAAG
GAAGAAACAGTTTTGGGAACCAGTTATAAACAAAGTCAGTGCCAGACTTA
GTACTTGGAAGGGGAGAATTTTGTCTATGGCAGGAAGAGTATGCTTACTT
AAATCGGTGTTTACCGCTATACCTCTCTTCTACTTGTCCTTCTTTAAAGC
ACCAATTTCAGTCTGTAACAGAATTATCAGTATACAGAGGAAGTTCCTTT
GGGCCTGGGGCAGAGATAACAGGTCTATAGCTTGGGTAAGATGGGAGGAT
GTGTGTAAACCCCTTGAGGACGGAGGGCTAGGGGTCAAAGATGTCAGAAT
TTTTAATAATGCTTTGCTGGCGAAATGGAAATGGCGACTGATGAATGATG
AAAGAGGGAAGTGGAAAGACATTCTTGATTCTAAGTATGGTTCAGAAGTA
GGGAGAAGTCATACACGCTTGAAATGGCAATCTTGGTGGTGGAGAGATCT
TTCTAAAGCTTGTGGGGAGGGTGAAGATGAATGGTTCCAAAAGTCTGTTG
TGTGGAAAGTTGGTGATGGAGGCAATGTAAAATTCTGGGAAGATGCGTGG
GTACATGGGAGAGTTATGGATGGCAGTGGCGGCTAA
back to top