Vigun08g060300.1

Transcript Overview


Name	Vigun08g060300.1
Unique Name	drVigUngu.IT97K.1.2.Vigun08g060300.1.v1.2
Type	mRNA
Organism	Vigna unguiculata (cowpea)
Sequence length	105

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
Vu08	chromosome	Vu08:7954440..7954544 +	Vigna unguiculata L. Walp IT97K-499-35 genome v1.2	n/a

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Vigna unguiculata L. Walp IT97K-499-35 genome v1.2	2024-07-03
InterProScan Analysis for Vigna unguiculata L. Walp IT97K-499-35 genome v1.2	2024-08-19
Blastp of Vigna unguiculata L. Walp IT97K-499-35 v1.2 proteins vs UniProt TrEMBL	2024-08-19
Blastp of Vigna unguiculata L. Walp IT97K-499-35 v1.2 proteins vs UniProt Swissprot	2024-08-19
Blastp of Vigna unguiculata L. Walp IT97K-499-35 v1.2 proteins vs arabidopsis Araport11	2024-08-19

Orthologs

Syntenic blocks


Syntentic block	Assembly	Species
vunvunR271	Vigna unguiculata L. Walp IT97K-499-35 genome v1.2	Vigna unguiculata
vuvunL456	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata
vuvunL521	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata

Gene/transcripts from the same species that appear to represent the same gene


Gene/Transcript	Assembly	Species
Vigun08g060300.1	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Vigun08g060300	drVigUngu.IT97K.1.2.Vigun08g060300.v1.2	Vigna unguiculata	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
drVigUngu.IT97K.1.2.Vigun08g060300.1.v1.2.exon.1	drVigUngu.IT97K.1.2.Vigun08g060300.1.v1.2.exon.1	Vigna unguiculata	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
drVigUngu.IT97K.1.2.Vigun08g060300.1.v1.2.CDS.1	drVigUngu.IT97K.1.2.Vigun08g060300.1.v1.2.CDS.1	Vigna unguiculata	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
drVigUngu.IT97K.1.2.Vigun08g060300.1.v1.2	drVigUngu.IT97K.1.2.Vigun08g060300.1.v1.2	Vigna unguiculata	polypeptide
drVigUngu.IT97K.1.2.Vigun08g060300.1.v1.2	drVigUngu.IT97K.1.2.Vigun08g060300.1.v1.2-protein	Vigna unguiculata	polypeptide

Homology

[Close]

BLAST of Vigun08g060300.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A510BV35|A0A510BV35_9FABA (Photosystem II reaction center protein M OS=Hylodesmum podocarpum subsp. podocarpum OX=2340850 GN=psbM PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 1.970e-13
Identity = 34/34 (100.00%), Postives = 34/34 (100.00%), Query Frame = 0

Query:    1 MEVNILAFIATALFILVPTAFLLIIYVKTVSKSD 34
            MEVNILAFIATALFILVPTAFLLIIYVKTVSKSD
Sbjct:    1 MEVNILAFIATALFILVPTAFLLIIYVKTVSKSD 34

[Close]

BLAST of Vigun08g060300.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A890CHH8|A0A890CHH8_9FABA (Photosystem II reaction center protein M OS=Cajanus crassus OX=2461305 GN=psbM PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 1.970e-13
Identity = 34/34 (100.00%), Postives = 34/34 (100.00%), Query Frame = 0

Query:    1 MEVNILAFIATALFILVPTAFLLIIYVKTVSKSD 34
            MEVNILAFIATALFILVPTAFLLIIYVKTVSKSD
Sbjct:    1 MEVNILAFIATALFILVPTAFLLIIYVKTVSKSD 34

[Close]

BLAST of Vigun08g060300.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A4Y5SEK1|A0A4Y5SEK1_9FABA (Photosystem II reaction center protein M OS=Lespedeza floribunda OX=587870 GN=psbM PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 1.970e-13
Identity = 34/34 (100.00%), Postives = 34/34 (100.00%), Query Frame = 0

Query:    1 MEVNILAFIATALFILVPTAFLLIIYVKTVSKSD 34
            MEVNILAFIATALFILVPTAFLLIIYVKTVSKSD
Sbjct:    1 MEVNILAFIATALFILVPTAFLLIIYVKTVSKSD 34

[Close]

BLAST of Vigun08g060300.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A510BVK0|A0A510BVK0_9FABA (Photosystem II reaction center protein M OS=Lespedeza maritima OX=926279 GN=psbM PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 1.970e-13
Identity = 34/34 (100.00%), Postives = 34/34 (100.00%), Query Frame = 0

Query:    1 MEVNILAFIATALFILVPTAFLLIIYVKTVSKSD 34
            MEVNILAFIATALFILVPTAFLLIIYVKTVSKSD
Sbjct:    1 MEVNILAFIATALFILVPTAFLLIIYVKTVSKSD 34

[Close]

BLAST of Vigun08g060300.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A8A0WQQ2|A0A8A0WQQ2_9FABA (Photosystem II reaction center protein M OS=Tadehagi triquetrum OX=714511 GN=psbM PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 1.970e-13
Identity = 34/34 (100.00%), Postives = 34/34 (100.00%), Query Frame = 0

Query:    1 MEVNILAFIATALFILVPTAFLLIIYVKTVSKSD 34
            MEVNILAFIATALFILVPTAFLLIIYVKTVSKSD
Sbjct:    1 MEVNILAFIATALFILVPTAFLLIIYVKTVSKSD 34

[Close]

BLAST of Vigun08g060300.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0AA96HSN1|A0AA96HSN1_9FABA (Photosystem II protein M OS=Campylotropis sp. LJ-2023a OX=3078450 GN=psbM PE=4 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 1.970e-13
Identity = 34/34 (100.00%), Postives = 34/34 (100.00%), Query Frame = 0

Query:    1 MEVNILAFIATALFILVPTAFLLIIYVKTVSKSD 34
            MEVNILAFIATALFILVPTAFLLIIYVKTVSKSD
Sbjct:    1 MEVNILAFIATALFILVPTAFLLIIYVKTVSKSD 34

[Close]

BLAST of Vigun08g060300.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A6M8PMG3|A0A6M8PMG3_9FABA (Photosystem II reaction center protein M OS=Spatholobus pulcher OX=1341721 GN=psbM PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 1.970e-13
Identity = 34/34 (100.00%), Postives = 34/34 (100.00%), Query Frame = 0

Query:    1 MEVNILAFIATALFILVPTAFLLIIYVKTVSKSD 34
            MEVNILAFIATALFILVPTAFLLIIYVKTVSKSD
Sbjct:    1 MEVNILAFIATALFILVPTAFLLIIYVKTVSKSD 34

[Close]

BLAST of Vigun08g060300.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A4Y5SGV3|A0A4Y5SGV3_9FABA (Photosystem II reaction center protein M OS=Lespedeza davurica OX=688281 GN=psbM PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 1.970e-13
Identity = 34/34 (100.00%), Postives = 34/34 (100.00%), Query Frame = 0

Query:    1 MEVNILAFIATALFILVPTAFLLIIYVKTVSKSD 34
            MEVNILAFIATALFILVPTAFLLIIYVKTVSKSD
Sbjct:    1 MEVNILAFIATALFILVPTAFLLIIYVKTVSKSD 34

[Close]

BLAST of Vigun08g060300.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A7G7YKY8|A0A7G7YKY8_9FABA (Photosystem II reaction center protein M OS=Uraria lagopodoides OX=1048768 GN=psbM PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 1.970e-13
Identity = 34/34 (100.00%), Postives = 34/34 (100.00%), Query Frame = 0

Query:    1 MEVNILAFIATALFILVPTAFLLIIYVKTVSKSD 34
            MEVNILAFIATALFILVPTAFLLIIYVKTVSKSD
Sbjct:    1 MEVNILAFIATALFILVPTAFLLIIYVKTVSKSD 34

[Close]

BLAST of Vigun08g060300.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A890W180|A0A890W180_9FABA (Photosystem II reaction center protein M OS=Decorsea schlechteri OX=271794 GN=psbM PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 1.970e-13
Identity = 34/34 (100.00%), Postives = 34/34 (100.00%), Query Frame = 0

Query:    1 MEVNILAFIATALFILVPTAFLLIIYVKTVSKSD 34
            MEVNILAFIATALFILVPTAFLLIIYVKTVSKSD
Sbjct:    1 MEVNILAFIATALFILVPTAFLLIIYVKTVSKSD 34

[Close]

BLAST of Vigun08g060300.1 vs. ExPASy Swiss-Prot (2024)
Match: sp|A4GGA3|PSBM_PHAVU (Photosystem II reaction center protein M OS=Phaseolus vulgaris OX=3885 GN=psbM PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 4.660e-16
Identity = 34/34 (100.00%), Postives = 34/34 (100.00%), Query Frame = 0

Query:    1 MEVNILAFIATALFILVPTAFLLIIYVKTVSKSD 34
            MEVNILAFIATALFILVPTAFLLIIYVKTVSKSD
Sbjct:    1 MEVNILAFIATALFILVPTAFLLIIYVKTVSKSD 34

[Close]

BLAST of Vigun08g060300.1 vs. ExPASy Swiss-Prot (2024)
Match: sp|Q2PMT7|PSBM_SOYBN (Photosystem II reaction center protein M OS=Glycine max OX=3847 GN=psbM PE=3 SV=1)

HSP 1 Score: 64.6994 bits (156), Expect = 1.173e-15
Identity = 33/34 (97.06%), Postives = 34/34 (100.00%), Query Frame = 0

Query:    1 MEVNILAFIATALFILVPTAFLLIIYVKTVSKSD 34
            MEVNILAFIATALFILVPTAFLLIIYVKTVS+SD
Sbjct:    1 MEVNILAFIATALFILVPTAFLLIIYVKTVSQSD 34

[Close]

BLAST of Vigun08g060300.1 vs. ExPASy Swiss-Prot (2024)
Match: sp|A4GYQ2|PSBM_POPTR (Photosystem II reaction center protein M OS=Populus trichocarpa OX=3694 GN=psbM PE=3 SV=1)

HSP 1 Score: 64.6994 bits (156), Expect = 1.173e-15
Identity = 33/34 (97.06%), Postives = 34/34 (100.00%), Query Frame = 0

Query:    1 MEVNILAFIATALFILVPTAFLLIIYVKTVSKSD 34
            MEVNILAFIATALFILVPTAFLLIIYVKTVS+SD
Sbjct:    1 MEVNILAFIATALFILVPTAFLLIIYVKTVSQSD 34

[Close]

BLAST of Vigun08g060300.1 vs. ExPASy Swiss-Prot (2024)
Match: sp|Q14FG3|PSBM_POPAL (Photosystem II reaction center protein M OS=Populus alba OX=43335 GN=psbM PE=3 SV=1)

HSP 1 Score: 64.6994 bits (156), Expect = 1.173e-15
Identity = 33/34 (97.06%), Postives = 34/34 (100.00%), Query Frame = 0

Query:    1 MEVNILAFIATALFILVPTAFLLIIYVKTVSKSD 34
            MEVNILAFIATALFILVPTAFLLIIYVKTVS+SD
Sbjct:    1 MEVNILAFIATALFILVPTAFLLIIYVKTVSQSD 34

[Close]

BLAST of Vigun08g060300.1 vs. ExPASy Swiss-Prot (2024)
Match: sp|P69529|PSBM_PEA (Photosystem II reaction center protein M OS=Pisum sativum OX=3888 GN=psbM PE=1 SV=1)

HSP 1 Score: 64.6994 bits (156), Expect = 1.173e-15
Identity = 33/34 (97.06%), Postives = 34/34 (100.00%), Query Frame = 0

Query:    1 MEVNILAFIATALFILVPTAFLLIIYVKTVSKSD 34
            MEVNILAFIATALFILVPTAFLLIIYVKTVS+SD
Sbjct:    1 MEVNILAFIATALFILVPTAFLLIIYVKTVSQSD 34

[Close]

BLAST of Vigun08g060300.1 vs. ExPASy Swiss-Prot (2024)
Match: sp|Q9MTM8|PSBM_OENEH (Photosystem II reaction center protein M OS=Oenothera elata subsp. hookeri OX=85636 GN=psbM PE=3 SV=2)

HSP 1 Score: 64.6994 bits (156), Expect = 1.173e-15
Identity = 33/34 (97.06%), Postives = 34/34 (100.00%), Query Frame = 0

Query:    1 MEVNILAFIATALFILVPTAFLLIIYVKTVSKSD 34
            MEVNILAFIATALFILVPTAFLLIIYVKTVS+SD
Sbjct:    1 MEVNILAFIATALFILVPTAFLLIIYVKTVSQSD 34

[Close]

BLAST of Vigun08g060300.1 vs. ExPASy Swiss-Prot (2024)
Match: sp|P69528|PSBM_LOTJA (Photosystem II reaction center protein M OS=Lotus japonicus OX=34305 GN=psbM PE=3 SV=1)

HSP 1 Score: 64.6994 bits (156), Expect = 1.173e-15
Identity = 33/34 (97.06%), Postives = 34/34 (100.00%), Query Frame = 0

Query:    1 MEVNILAFIATALFILVPTAFLLIIYVKTVSKSD 34
            MEVNILAFIATALFILVPTAFLLIIYVKTVS+SD
Sbjct:    1 MEVNILAFIATALFILVPTAFLLIIYVKTVSQSD 34

[Close]

BLAST of Vigun08g060300.1 vs. ExPASy Swiss-Prot (2024)
Match: sp|Q2L8Z8|PSBM_GOSHI (Photosystem II reaction center protein M OS=Gossypium hirsutum OX=3635 GN=psbM PE=3 SV=1)

HSP 1 Score: 64.6994 bits (156), Expect = 1.173e-15
Identity = 33/34 (97.06%), Postives = 34/34 (100.00%), Query Frame = 0

Query:    1 MEVNILAFIATALFILVPTAFLLIIYVKTVSKSD 34
            MEVNILAFIATALFILVPTAFLLIIYVKTVS+SD
Sbjct:    1 MEVNILAFIATALFILVPTAFLLIIYVKTVSQSD 34

[Close]

BLAST of Vigun08g060300.1 vs. ExPASy Swiss-Prot (2024)
Match: sp|A0ZZ29|PSBM_GOSBA (Photosystem II reaction center protein M OS=Gossypium barbadense OX=3634 GN=psbM PE=3 SV=1)

HSP 1 Score: 64.6994 bits (156), Expect = 1.173e-15
Identity = 33/34 (97.06%), Postives = 34/34 (100.00%), Query Frame = 0

Query:    1 MEVNILAFIATALFILVPTAFLLIIYVKTVSKSD 34
            MEVNILAFIATALFILVPTAFLLIIYVKTVS+SD
Sbjct:    1 MEVNILAFIATALFILVPTAFLLIIYVKTVSQSD 34

[Close]

BLAST of Vigun08g060300.1 vs. ExPASy Swiss-Prot (2024)
Match: sp|Q49L04|PSBM_EUCGG (Photosystem II reaction center protein M OS=Eucalyptus globulus subsp. globulus OX=71271 GN=psbM PE=3 SV=1)

HSP 1 Score: 64.6994 bits (156), Expect = 1.173e-15
Identity = 33/34 (97.06%), Postives = 34/34 (100.00%), Query Frame = 0

Query:    1 MEVNILAFIATALFILVPTAFLLIIYVKTVSKSD 34
            MEVNILAFIATALFILVPTAFLLIIYVKTVS+SD
Sbjct:    1 MEVNILAFIATALFILVPTAFLLIIYVKTVSQSD 34

[Close]

BLAST of Vigun08g060300.1 vs. Araport11
Match: | (Symbols: PSBM | photosystem II reaction center protein M | chrc:28707-28811 REVERSE LENGTH=34)

HSP 1 Score: 63.5438 bits (153), Expect = 3.204e-16
Identity = 33/35 (94.29%), Postives = 35/35 (100.00%), Query Frame = 0

Query:    1 MEVNILAFIATALFILVPTAFLLIIYVKTVSKSD* 35
            MEVNILAFIATALFILVPTAFLLIIYVKTVS++D*
Sbjct:    1 MEVNILAFIATALFILVPTAFLLIIYVKTVSQND* 35

The following BLAST results are available for this feature:

BLAST of Vigun08g060300.1 vs. ExPASy TrEMBL (2024)
BLAST of Vigun08g060300.1 vs. ExPASy Swiss-Prot (2024)
BLAST of Vigun08g060300.1 vs. Araport11

BLAST of Vigun08g060300.1 vs. ExPASy TrEMBL (2024)
Analysis Date: 2024-08-19 (Blastp of Vigna unguiculata L. Walp IT97K-499-35 v1.2 proteins vs UniProt TrEMBL)
Total hits: 10

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
tr\|A0A510BV35\|A0A510BV35_9FABA	1.970e-13	100.00	Photosystem II reaction center protein M OS=Hylode...	[more]
tr\|A0A890CHH8\|A0A890CHH8_9FABA	1.970e-13	100.00	Photosystem II reaction center protein M OS=Cajanu...	[more]
tr\|A0A4Y5SEK1\|A0A4Y5SEK1_9FABA	1.970e-13	100.00	Photosystem II reaction center protein M OS=Lesped...	[more]
tr\|A0A510BVK0\|A0A510BVK0_9FABA	1.970e-13	100.00	Photosystem II reaction center protein M OS=Lesped...	[more]
tr\|A0A8A0WQQ2\|A0A8A0WQQ2_9FABA	1.970e-13	100.00	Photosystem II reaction center protein M OS=Tadeha...	[more]
tr\|A0AA96HSN1\|A0AA96HSN1_9FABA	1.970e-13	100.00	Photosystem II protein M OS=Campylotropis sp. LJ-2...	[more]
tr\|A0A6M8PMG3\|A0A6M8PMG3_9FABA	1.970e-13	100.00	Photosystem II reaction center protein M OS=Spatho...	[more]
tr\|A0A4Y5SGV3\|A0A4Y5SGV3_9FABA	1.970e-13	100.00	Photosystem II reaction center protein M OS=Lesped...	[more]
tr\|A0A7G7YKY8\|A0A7G7YKY8_9FABA	1.970e-13	100.00	Photosystem II reaction center protein M OS=Uraria...	[more]
tr\|A0A890W180\|A0A890W180_9FABA	1.970e-13	100.00	Photosystem II reaction center protein M OS=Decors...	[more]

BLAST of Vigun08g060300.1 vs. ExPASy Swiss-Prot (2024)
Analysis Date: 2024-08-19 (Blastp of Vigna unguiculata L. Walp IT97K-499-35 v1.2 proteins vs UniProt Swissprot)
Total hits: 10

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
sp\|A4GGA3\|PSBM_PHAVU	4.660e-16	100.00	Photosystem II reaction center protein M OS=Phaseo...	[more]
sp\|Q2PMT7\|PSBM_SOYBN	1.173e-15	97.06	Photosystem II reaction center protein M OS=Glycin...	[more]
sp\|A4GYQ2\|PSBM_POPTR	1.173e-15	97.06	Photosystem II reaction center protein M OS=Populu...	[more]
sp\|Q14FG3\|PSBM_POPAL	1.173e-15	97.06	Photosystem II reaction center protein M OS=Populu...	[more]
sp\|P69529\|PSBM_PEA	1.173e-15	97.06	Photosystem II reaction center protein M OS=Pisum ...	[more]
sp\|Q9MTM8\|PSBM_OENEH	1.173e-15	97.06	Photosystem II reaction center protein M OS=Oenoth...	[more]
sp\|P69528\|PSBM_LOTJA	1.173e-15	97.06	Photosystem II reaction center protein M OS=Lotus ...	[more]
sp\|Q2L8Z8\|PSBM_GOSHI	1.173e-15	97.06	Photosystem II reaction center protein M OS=Gossyp...	[more]
sp\|A0ZZ29\|PSBM_GOSBA	1.173e-15	97.06	Photosystem II reaction center protein M OS=Gossyp...	[more]
sp\|Q49L04\|PSBM_EUCGG	1.173e-15	97.06	Photosystem II reaction center protein M OS=Eucaly...	[more]

BLAST of Vigun08g060300.1 vs. Araport11
Analysis Date: 2024-08-19 (Blastp of Vigna unguiculata L. Walp IT97K-499-35 v1.2 proteins vs arabidopsis Araport11)
Total hits: 1

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
\|	3.204e-16	94.29	Symbols: PSBM \| photosystem II reaction center pro...	[more]

InterPro

Analysis Name: InterProScan Analysis for Vigna unguiculata L. Walp IT97K-499-35 genome v1.2
Date Performed: 2024-08-19

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007826	Photosystem II PsbM	PFAM	PF05151	PsbM	coord: 1..31 e-value: 1.4E-15 score: 68.1
IPR007826	Photosystem II PsbM	NCBIFAM	TIGR03038	PS_II_psbM	coord: 1..33 e-value: 2.1E-16 score: 70.6
IPR007826	Photosystem II PsbM	PANTHER	PTHR35774	PHOTOSYSTEM II REACTION CENTER PROTEIN M	coord: 1..34
IPR007826	Photosystem II PsbM	HAMAP	MF_00438	PSII_PsbM	coord: 1..34 score: 15.364214
IPR037269	Photosystem II PsbM superfamily	SUPERFAMILY	161033	Photosystem II reaction center protein M, PsbM	coord: 1..33

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at Vu08:7954440..7954544+
coding sequence from alignment at Vu08:7954440..7954544+

mRNA sequence

>drVigUngu.IT97K.1.2.Vigun08g060300.1.v1.2 ID=drVigUngu.IT97K.1.2.Vigun08g060300.1.v1.2; Name=Vigun08g060300.1; organism=Vigna unguiculata; type=mRNA; length=105bp
ATGGAAGTAAATATTCTCGCATTTATTGCTACTGCACTGTTTATTCTAGT
TCCTACTGCTTTTTTACTTATAATTTATGTAAAAACGGTAAGTAAAAGTG
ACTAA

protein sequence of drVigUngu.IT97K.1.2.Vigun08g060300.1.v1.2

>drVigUngu.IT97K.1.2.Vigun08g060300.1.v1.2 ID=drVigUngu.IT97K.1.2.Vigun08g060300.1.v1.2; Name=drVigUngu.IT97K.1.2.Vigun08g060300.1.v1.2; organism=Vigna unguiculata; type=polypeptide; length=35bp
MEVNILAFIATALFILVPTAFLLIIYVKTVSKSD*

mRNA from alignment at Vu08:7954440..7954544+

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>drVigUngu.IT97K.1.2.Vigun08g060300.1.v1.2 ID=drVigUngu.IT97K.1.2.Vigun08g060300.1.v1.2; Name=Vigun08g060300.1; organism=Vigna unguiculata; type=mRNA; length=105bp; location=Sequence derived from: Vu08:7954440..7954544+ (Vigna unguiculata
ATGGAAGTAAATATTCTCGCATTTATTGCTACTGCACTGTTTATTCTAGT
TCCTACTGCTTTTTTACTTATAATTTATGTAAAAACGGTAAGTAAAAGTG
ACTAA

Coding sequence (CDS) from alignment at Vu08:7954440..7954544+

>drVigUngu.IT97K.1.2.Vigun08g060300.1.v1.2 ID=drVigUngu.IT97K.1.2.Vigun08g060300.1.v1.2; Name=Vigun08g060300.1; organism=Vigna unguiculata; type=CDS; length=105bp; location=Sequence derived from: Vu08:7954440..7954544+ (Vigna unguiculata
ATGGAAGTAAATATTCTCGCATTTATTGCTACTGCACTGTTTATTCTAGT
TCCTACTGCTTTTTTACTTATAATTTATGTAAAAACGGTAAGTAAAAGTG
ACTAA

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR007826	PSII_PsbM
IPR037269	PSII_PsbM_sf

Vocabulary: **Biological Process**
Term	Definition
GO:0015979	photosynthesis
GO:0019684	photosynthesis, light reaction

Vocabulary: **Cellular Component**
Term	Definition
GO:0016020	membrane
GO:0009523	photosystem II

Search form

Vigun08g060300.1