Vigun01g039700.1

Transcript Overview
NameVigun01g039700.1
Unique NamedrVigUngu.IT97K.1.2.Vigun01g039700.1.v1.2
TypemRNA
OrganismVigna unguiculata (cowpea)
Sequence length195
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Vu01chromosomeVu01:5444510..5445089 -Vigna unguiculata L. Walp IT97K-499-35 genome v1.2n/a
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
vuvunL000Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
pvvunL430Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris

Orthologs
Gene/TranscriptAssemblySpecies
Phvul.005G036132.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
Vigun01g039700.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Vigun01g039700drVigUngu.IT97K.1.2.Vigun01g039700.v1.2Vigna unguiculatagene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
drVigUngu.IT97K.1.2.Vigun01g039700.1.v1.2.exon.2drVigUngu.IT97K.1.2.Vigun01g039700.1.v1.2.exon.2Vigna unguiculataexon
drVigUngu.IT97K.1.2.Vigun01g039700.1.v1.2.exon.1drVigUngu.IT97K.1.2.Vigun01g039700.1.v1.2.exon.1Vigna unguiculataexon


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
drVigUngu.IT97K.1.2.Vigun01g039700.1.v1.2.three_prime_UTR.2drVigUngu.IT97K.1.2.Vigun01g039700.1.v1.2.three_prime_UTR.2Vigna unguiculatathree_prime_UTR
drVigUngu.IT97K.1.2.Vigun01g039700.1.v1.2.three_prime_UTR.1drVigUngu.IT97K.1.2.Vigun01g039700.1.v1.2.three_prime_UTR.1Vigna unguiculatathree_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
drVigUngu.IT97K.1.2.Vigun01g039700.1.v1.2.CDS.1drVigUngu.IT97K.1.2.Vigun01g039700.1.v1.2.CDS.1Vigna unguiculataCDS


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
drVigUngu.IT97K.1.2.Vigun01g039700.1.v1.2.five_prime_UTR.1drVigUngu.IT97K.1.2.Vigun01g039700.1.v1.2.five_prime_UTR.1Vigna unguiculatafive_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
drVigUngu.IT97K.1.2.Vigun01g039700.1.v1.2drVigUngu.IT97K.1.2.Vigun01g039700.1.v1.2Vigna unguiculatapolypeptide
drVigUngu.IT97K.1.2.Vigun01g039700.1.v1.2drVigUngu.IT97K.1.2.Vigun01g039700.1.v1.2-proteinVigna unguiculatapolypeptide


Homology
BLAST of Vigun01g039700.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A4D6M5E0|A0A4D6M5E0_VIGUN (Arabinogalactan peptide OS=Vigna unguiculata OX=3917 GN=DEO72_LG6g503 PE=4 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.074e-33
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 0
Query:    1 MASPKLMFMSLTTILLLLTVFSATVSAQSSPTPAPDAGAAGSVSGSAVTVGAAVVLSMLAIFKQ 64
            MASPKLMFMSLTTILLLLTVFSATVSAQSSPTPAPDAGAAGSVSGSAVTVGAAVVLSMLAIFKQ
Sbjct:    1 MASPKLMFMSLTTILLLLTVFSATVSAQSSPTPAPDAGAAGSVSGSAVTVGAAVVLSMLAIFKQ 64          
BLAST of Vigun01g039700.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A0R0G6S5|A0A0R0G6S5_SOYBN (Transmembrane protein OS=Glycine max OX=3847 GN=GLYMA_15G272800 PE=4 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 4.684e-18
Identity = 43/64 (67.19%), Postives = 51/64 (79.69%), Query Frame = 0
Query:    1 MASPKLMFMSLTTILLLLTVFSATVSAQSSPTPAPDAGAAGSVSGSAVTVGAAVVLSMLAIFKQ 64
            M S K MFMSL  ++L + +FSATVSAQ SPTPAPD GAAG+VS SA  +GAAVV++MLAIFK 
Sbjct:    1 MESTKSMFMSLA-VILFIALFSATVSAQGSPTPAPDGGAAGTVSSSASMIGAAVVITMLAIFKH 63          
BLAST of Vigun01g039700.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A445GZ33|A0A445GZ33_GLYSO (Uncharacterized protein OS=Glycine soja OX=3848 GN=D0Y65_042214 PE=4 SV=1)

HSP 1 Score: 63.929 bits (154), Expect = 6.895e-12
Identity = 35/54 (64.81%), Postives = 42/54 (77.78%), Query Frame = 0
Query:    1 MASPKLMFMSLTTILLLLTVFSATVSAQSSPTPAPDAGAAGSVSGSAVTVGAAV 54
            M S K MFMSL  ++L + +FSATVSAQ SPTPAPD GAAG+VS SA  +GAA+
Sbjct:    1 MESTKSMFMSLA-VILFIALFSATVSAQGSPTPAPDGGAAGTVSSSASMIGAAI 53          
BLAST of Vigun01g039700.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A4D6M4V7|A0A4D6M4V7_VIGUN (Arabinogalactan peptide OS=Vigna unguiculata OX=3917 GN=DEO72_LG6g245 PE=4 SV=1)

HSP 1 Score: 59.3066 bits (142), Expect = 5.339e-10
Identity = 36/67 (53.73%), Postives = 46/67 (68.66%), Query Frame = 0
Query:    1 MASPKLMFMSLTTILLLLTVFSATVSAQ---SSPTPAPDAGAAGSVSGSAVTVGAAVVLSMLAIFKQ 64
            MAS  L F S   ++L++ +F A  SAQ   ++P P PDAGAAGSVS S   +GA++VLSMLAIFK 
Sbjct:    1 MASQTLSFNSFA-VVLVVALFFAVASAQDLSTAPAPGPDAGAAGSVSSSMAVIGASIVLSMLAIFKH 66          
BLAST of Vigun01g039700.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A445GZ65|A0A445GZ65_GLYSO (Transmembrane protein OS=Glycine soja OX=3848 GN=D0Y65_042212 PE=4 SV=1)

HSP 1 Score: 56.9954 bits (136), Expect = 3.800e-9
Identity = 36/67 (53.73%), Postives = 45/67 (67.16%), Query Frame = 0
Query:    1 MASPKLMFMSLTTILLLLTVFSATVSAQS---SPTPAPDAGAAGSVSGSAVTVGAAVVLSMLAIFKQ 64
            MAS  + F S  T++++   F+A  SAQ    +P P PDAGAAGSVS S   +GA+VVLSMLAIFK 
Sbjct:    1 MASQAITFKSFATVIIVALFFAAAASAQDLSPAPAPGPDAGAAGSVSSSVAVIGASVVLSMLAIFKH 67          
BLAST of Vigun01g039700.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A445GZC2|A0A445GZC2_GLYSO (Transmembrane protein OS=Glycine soja OX=3848 GN=D0Y65_042211 PE=4 SV=1)

HSP 1 Score: 56.6102 bits (135), Expect = 5.041e-9
Identity = 34/66 (51.52%), Postives = 41/66 (62.12%), Query Frame = 0
Query:    1 MASPKLMFMSLTTILLLLTVFSATVSAQSSPTPA--PDAGAAGSVSGSAVTVGAAVVLSMLAIFKQ 64
            MAS    F S    L++   F+A ++   SP PA  PDAGAAGSVS S   +GA+VVLSM AIFK 
Sbjct:    1 MASQATSFKSFVIALIVALFFAAAIAQDLSPAPAQGPDAGAAGSVSSSVAVIGASVVLSMFAIFKH 66          
BLAST of Vigun01g039700.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A0L9UKH4|A0A0L9UKH4_PHAAN (Transmembrane protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan05g086700 PE=4 SV=1)

HSP 1 Score: 55.8398 bits (133), Expect = 9.564e-9
Identity = 31/54 (57.41%), Postives = 39/54 (72.22%), Query Frame = 0
Query:   14 ILLLLTVFSATVSAQS---SPTPAPDAGAAGSVSGSAVTVGAAVVLSMLAIFKQ 64
            ++L++ +F A  SAQ    +P P PDAGAAGSVS S   +GA+VVLSMLAIFK 
Sbjct:   10 VVLVVALFFAVASAQDLSPAPAPGPDAGAAGSVSSSMAVIGASVVLSMLAIFKH 63          
BLAST of Vigun01g039700.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A0S3SIQ1|A0A0S3SIQ1_PHAAN (PGG domain-containing protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.07G154300 PE=4 SV=1)

HSP 1 Score: 56.9954 bits (136), Expect = 1.779e-8
Identity = 31/54 (57.41%), Postives = 39/54 (72.22%), Query Frame = 0
Query:   14 ILLLLTVFSATVSAQS---SPTPAPDAGAAGSVSGSAVTVGAAVVLSMLAIFKQ 64
            ++L++ +F A  SAQ    +P P PDAGAAGSVS S   +GA+VVLSMLAIFK 
Sbjct:   76 VVLVVALFFAVASAQDLSPAPAPGPDAGAAGSVSSSMAVIGASVVLSMLAIFKH 129          
BLAST of Vigun01g039700.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A072UUZ2|A0A072UUZ2_MEDTR (Transmembrane protein, putative OS=Medicago truncatula OX=3880 GN=MTR_3g028465 PE=4 SV=1)

HSP 1 Score: 55.0694 bits (131), Expect = 2.439e-8
Identity = 37/70 (52.86%), Postives = 44/70 (62.86%), Query Frame = 0
Query:    1 MASPKLMFMSLTTILLLLTVFSATV-SAQS-----SPTPAPDAGAAGSVSGSAVTVGAAVVLSMLAIFKQ 64
            MAS  + F S      L+ +F+ATV SAQ      +P P PDAGAAGSV+ S   VG +VVLSMLAIFK 
Sbjct:    1 MASSAIKFFSF----FLVIIFAATVASAQDLSPSLAPAPGPDAGAAGSVTSSVAMVGISVVLSMLAIFKH 66          
BLAST of Vigun01g039700.1 vs. ExPASy TrEMBL (2024)
Match: tr|A0A396IN19|A0A396IN19_MEDTR (Transmembrane protein OS=Medicago truncatula OX=3880 GN=MtrunA17_Chr3g0088031 PE=4 SV=1)

HSP 1 Score: 53.9138 bits (128), Expect = 4.822e-8
Identity = 30/56 (53.57%), Postives = 39/56 (69.64%), Query Frame = 0
Query:   15 LLLLTVFSATV-SAQS-----SPTPAPDAGAAGSVSGSAVTVGAAVVLSMLAIFKQ 64
              L+ +F+ATV SAQ      +P P PDAGAAGS++ SA  +G ++VLSMLAIFK 
Sbjct:    6 FFLVIIFAATVASAQDLSPSLAPAPGPDAGAAGSITSSAAMIGVSIVLSMLAIFKH 61          
The following BLAST results are available for this feature:
BLAST of Vigun01g039700.1 vs. ExPASy TrEMBL (2024)
Analysis Date: 2024-08-19 (Blastp of Vigna unguiculata L. Walp IT97K-499-35 v1.2 proteins vs UniProt TrEMBL)
Total hits: 10
Match NameE-valueIdentityDescription
tr|A0A4D6M5E0|A0A4D6M5E0_VIGUN1.074e-33100.00Arabinogalactan peptide OS=Vigna unguiculata OX=39... [more]
tr|A0A0R0G6S5|A0A0R0G6S5_SOYBN4.684e-1867.19Transmembrane protein OS=Glycine max OX=3847 GN=GL... [more]
tr|A0A445GZ33|A0A445GZ33_GLYSO6.895e-1264.81Uncharacterized protein OS=Glycine soja OX=3848 GN... [more]
tr|A0A4D6M4V7|A0A4D6M4V7_VIGUN5.339e-1053.73Arabinogalactan peptide OS=Vigna unguiculata OX=39... [more]
tr|A0A445GZ65|A0A445GZ65_GLYSO3.800e-953.73Transmembrane protein OS=Glycine soja OX=3848 GN=D... [more]
tr|A0A445GZC2|A0A445GZC2_GLYSO5.041e-951.52Transmembrane protein OS=Glycine soja OX=3848 GN=D... [more]
tr|A0A0L9UKH4|A0A0L9UKH4_PHAAN9.564e-957.41Transmembrane protein OS=Phaseolus angularis OX=39... [more]
tr|A0A0S3SIQ1|A0A0S3SIQ1_PHAAN1.779e-857.41PGG domain-containing protein OS=Vigna angularis v... [more]
tr|A0A072UUZ2|A0A072UUZ2_MEDTR2.439e-852.86Transmembrane protein, putative OS=Medicago trunca... [more]
tr|A0A396IN19|A0A396IN19_MEDTR4.822e-853.57Transmembrane protein OS=Medicago truncatula OX=38... [more]
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BLAST of Vigun01g039700.1 vs. ExPASy TrEMBL (2024)
Analysis Date: 2024-08-19 (Blastp of Vigna unguiculata L. Walp IT97K-499-35 v1.2 proteins vs UniProt Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Vigun01g039700.1 vs. ExPASy TrEMBL (2024)
Analysis Date: 2024-08-19 (Blastp of Vigna unguiculata L. Walp IT97K-499-35 v1.2 proteins vs arabidopsis Araport11)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan Analysis for Vigna unguiculata L. Walp IT97K-499-35 genome v1.2
Date Performed: 2024-08-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33659PROTEIN, PUTATIVE-RELATED-RELATEDcoord: 1..64

Sequences
The following sequences are available for this feature:

mRNA sequence

>drVigUngu.IT97K.1.2.Vigun01g039700.1.v1.2 ID=drVigUngu.IT97K.1.2.Vigun01g039700.1.v1.2; Name=Vigun01g039700.1; organism=Vigna unguiculata; type=mRNA; length=195bp
ATGGCATCACCAAAACTCATGTTCATGTCTCTCACCACCATCCTCCTCCT
CCTCACGGTGTTCTCCGCCACTGTGTCCGCCCAGAGCTCCCCAACTCCCG
CTCCTGACGCCGGCGCAGCCGGATCAGTTTCCGGCTCCGCCGTGACGGTA
GGAGCTGCGGTTGTCTTGTCCATGCTTGCCATCTTCAAGCAATGA
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protein sequence of drVigUngu.IT97K.1.2.Vigun01g039700.1.v1.2

>drVigUngu.IT97K.1.2.Vigun01g039700.1.v1.2 ID=drVigUngu.IT97K.1.2.Vigun01g039700.1.v1.2; Name=drVigUngu.IT97K.1.2.Vigun01g039700.1.v1.2; organism=Vigna unguiculata; type=polypeptide; length=65bp
MASPKLMFMSLTTILLLLTVFSATVSAQSSPTPAPDAGAAGSVSGSAVTV
GAAVVLSMLAIFKQ*
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mRNA from alignment at Vu01:5444510..5445089-

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>drVigUngu.IT97K.1.2.Vigun01g039700.1.v1.2 ID=drVigUngu.IT97K.1.2.Vigun01g039700.1.v1.2; Name=Vigun01g039700.1; organism=Vigna unguiculata; type=mRNA; length=580bp; location=Sequence derived from: Vu01:5444510..5445089- (Vigna unguiculata
CCACCTTCCACTGTTCTACTCTCCATCTTAACATCTTCAACCTAATCTCT CATTTTTCTCTCTCTTCACTTTCCCATGGCATCACCAAAACTCATGTTCA TGTCTCTCACCACCATCCTCCTCCTCCTCACGGTGTTCTCCGCCACTGTG TCCGCCCAGAGCTCCCCAACTCCCGCTCCTGACGCCGGCGCAGCCGGATC AGTTTCCGGCTCCGCCGTGACGGTAGGAGCTGCGGTTGTCTTGTCCATGC TTGCCATCTTCAAGCAATGAGTCCATTCATGTTGTGTGGTTTCGTTTCTA TTATACAGTTTGATTTGATTCAGTGATGATTATGGTGAGTTTGGCGTTTG TATATAGTGTATACTGTGACAAAATGAGAGAATATTCACTTATATTTACT TCTGTTATTTAATTGTAGGTGATAGGGAGAAATAATTCACAAAGGATCTT TTTCTTTGTCATGTTTATTCTTTTTCGAGGCTTTCTTGTATAATTATTAT AAATATATATCATGTGTTTGTTCATTTTGTTTCGGTGTGTTTTGTTTTCA CTTTTTCTTTTTTGTGTATACCGTATAAGG
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Coding sequence (CDS) from alignment at Vu01:5444510..5445089-

>drVigUngu.IT97K.1.2.Vigun01g039700.1.v1.2 ID=drVigUngu.IT97K.1.2.Vigun01g039700.1.v1.2; Name=Vigun01g039700.1; organism=Vigna unguiculata; type=CDS; length=195bp; location=Sequence derived from: Vu01:5444510..5445089- (Vigna unguiculata
ATGGCATCACCAAAACTCATGTTCATGTCTCTCACCACCATCCTCCTCCT
CCTCACGGTGTTCTCCGCCACTGTGTCCGCCCAGAGCTCCCCAACTCCCG
CTCCTGACGCCGGCGCAGCCGGATCAGTTTCCGGCTCCGCCGTGACGGTA
GGAGCTGCGGTTGTCTTGTCCATGCTTGCCATCTTCAAGCAATGA
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