Ca_07186, Ca_07186_v1.0_kabuli (mRNA) Cicer arietinum

Transcript Overview
NameCa_07186
Unique NameCa_07186_v1.0_kabuli
TypemRNA
OrganismCicer arietinum (chickpea)
Sequence length375
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Ca3chromosomeCa3:28782026..28782400 +Cicer arietinum CDC Frontier genome v1.0n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Cicer arietinum CDC Frontier genome v1.02013-01-01
InterProScan analysis for kabuli C. arietinum unigenes2013-10-24
Homology Analysis: Kabuli C.arietinum mRNA vs TrEMBL2013-10-24
BLAST: C. arietinum CDC Frontier (kabuli), Swissprot2019-05-21
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Ca_07186-CDS1Ca_07186-CDS1Cicer arietinumCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Ca_07186_v1.0_kabuliCa_07186_v1.0_kabuliCicer arietinumpolypeptide


Homology
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BLAST of Ca_07186 vs. TrEMBL
Match: G7KLP5_MEDTR (Blue copper protein OS=Medicago truncatula GN=MTR_6g080660 PE=4 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 2.720e-27
Identity = 67/120 (55.83%), Postives = 76/120 (63.33%), Query Frame = 1 
Query:    1 MATYNTGETVIHITEEGTRYFVCGRLGHCQQGLKLEVQVQAQSNNNGTNDDQNQ--HGGXXXXXXXXXXXXXXXXXXXXXXXXDAPVKEPCDCSCAEEGHWVVPLITLVIILALTRSSFF 354
            ++T+NTGETVIH+TE GTRYFVCGR+GHCQQGLKLEV+VQAQSNN GT+   +                              DA  K PCDCSCA+EG   VPLITLVIILA   SSFF
Sbjct:   84 ISTHNTGETVIHLTESGTRYFVCGRMGHCQQGLKLEVKVQAQSNNTGTSPPPSSAPRPHSPPSPPNGDSPPSPPHSDSPPSPPDAHAKAPCDCSCADEGRLGVPLITLVIILAFAWSSFF 203
[Close]
BLAST of Ca_07186 vs. TrEMBL
Match: I1MQJ7_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=2)

HSP 1 Score: 124.79 bits (312), Expect = 1.034e-26
Identity = 69/125 (55.20%), Postives = 82/125 (65.60%), Query Frame = 1 
Query:    1 MATYNTGETVIHITEEGTRYFVCGRLGHCQQGLKLEVQVQAQSNNNGTNDDQNQH-GGXXXXXXXXXXXXXXXXXXXXXXXXDAPVKEPCDCSCAEEGHWVVPLITLVIILALTRSSFF--FSHI 366
            +ATY+ GETVIH+++  TRYFVCGR+GHCQQGLKL+VQ+ AQS NNGT++DQNQ  GG                        D PV  PCDCS AEE H VVPLITLVI+LA  R+ FF  F H+
Sbjct:   87 LATYDNGETVIHLSDAKTRYFVCGRMGHCQQGLKLQVQILAQS-NNGTSNDQNQSPGGSPPSTSPPPPPPPPPPQDDEQPPADEPV--PCDCSRAEERHGVVPLITLVIVLAFARTHFFIAFPHL 208
[Close]
BLAST of Ca_07186 vs. TrEMBL
Match: K7LEB4_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 9.055e-23
Identity = 66/141 (46.81%), Postives = 80/141 (56.74%), Query Frame = 1 
Query:    1 MATYNTGETVIHITEEGTRYFVCGRLGHCQQGLKLEVQVQAQSNNNGTNDDQNQHGG-----------------XXXXXXXXXXXXXXXXXXXXXXXXDAPVKEPCDCSCAEEGHWVVPLITLVIILALTRSSFF--FSHI 366
            +ATY+ GETVIH+++  TRYFVCGR+ HCQQGLKL+VQ+ AQS NNGT+DDQNQ  G                                         D PV  PCDC+ AEE H VVPLITLVI++AL  + FF  F H+
Sbjct:   87 LATYDNGETVIHLSDAKTRYFVCGRMRHCQQGLKLQVQILAQS-NNGTSDDQNQSPGAGTGTVGSPPSPSPPPPPPPPPPPPPPPVSPPPHGDEQPPADEPV--PCDCNRAEERHGVVPLITLVIVVALAHAPFFIAFPHL 224
[Close]
BLAST of Ca_07186 vs. TrEMBL
Match: M5W8T6_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa1027131mg PE=4 SV=1)

HSP 1 Score: 61.2326 bits (147), Expect = 1.403e-7
Identity = 29/48 (60.42%), Postives = 34/48 (70.83%), Query Frame = 1 
Query:    1 MATYNTGETVIHITEEGTRYFVCGRLGHCQQGLKLEVQV---QAQSNN 135
            M T++ GETVI + E G RYF+CGRLGHC  GLKL VQV   Q  +NN
Sbjct:   94 METHDEGETVIQLREVGNRYFICGRLGHCAMGLKLHVQVFPAQLMTNN 141
[Close]
BLAST of Ca_07186 vs. DB:Swiss
Match: UCC1_ARATH (Uclacyanin 1 OS=Arabidopsis thaliana OX=3702 GN=UCC1 PE=1 SV=1)

HSP 1 Score: 52.7582 bits (125), Expect = 6.640e-8
Identity = 21/53 (39.62%), Postives = 30/53 (56.60%), Query Frame = 1 
Query:    1 MATYNTGETVIHITEEGTRYFVCGRLGHCQQGLKLEVQVQAQSNNNGTNDDQN 159
            + T+  G +++ +T  G RYF+CG  GHC QG+KLEV V   +    T    N
Sbjct:   83 LITFANGNSLVPLTTPGKRYFICGMPGHCSQGMKLEVNVVPTATVAPTAPLPN 135
The following BLAST results are available for this feature:
BLAST of Ca_07186 vs. TrEMBL
Analysis Date: 2013-10-24 (Homology Analysis: Kabuli C.arietinum mRNA vs TrEMBL)
Total hits: 4
Match NameE-valueIdentityDescription
G7KLP5_MEDTR2.720e-2755.83Blue copper protein OS=Medicago truncatula GN=MTR_... [more]
I1MQJ7_SOYBN1.034e-2655.20Uncharacterized protein OS=Glycine max PE=4 SV=2[more]
K7LEB4_SOYBN9.055e-2346.81Uncharacterized protein OS=Glycine max PE=4 SV=1[more]
M5W8T6_PRUPE1.403e-760.42Uncharacterized protein OS=Prunus persica GN=PRUPE... [more]
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BLAST of Ca_07186 vs. DB:Swiss
Analysis Date: 2019-05-21 (BLAST: C. arietinum CDC Frontier (kabuli), Swissprot)
Total hits: 1
Match NameE-valueIdentityDescription
UCC1_ARATH6.640e-839.62Uclacyanin 1 OS=Arabidopsis thaliana OX=3702 GN=UC... [more]
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InterPro
Analysis Name: InterProScan analysis for kabuli C. arietinum unigenes
Date Performed: 2013-10-24
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003245Plastocyanin-likePRODOMPD003122Q6ZJW0_ORYSA_Q6ZJW0;coord: 1..43
score: 1
IPR003245Plastocyanin-likePFAMPF02298Cu_bind_likecoord: 2..32
score: 9.5
IPR003245Plastocyanin-likePROFILEPS51485PHYTOCYANINcoord: 1..41
score: 16
IPR008972CupredoxinGENE3D2.60.40.420no descriptioncoord: 2..44
score: 2.1
IPR008972CupredoxinSUPERFAMILY49503Cupredoxinscoord: 1..40
score: 2.5
NoneNo IPR availableSEGsegsegcoord: 58..81
score
NoneNo IPR availableSEGsegsegcoord: 31..45
score: NAcoord: 46..78
score
NoneNo IPR availableSEGsegsegcoord: 8..34
score: NAcoord: 37..52
score

Sequences
The following sequences are available for this feature:

mRNA sequence

>Ca_07186_v1.0_kabuli ID=Ca_07186_v1.0_kabuli; Name=Ca_07186; organism=Cicer arietinum; type=mRNA; length=375bp
ATGGCCACGTATAACACCGGCGAAACAGTGATCCACATCACCGAAGAAGG
AACCCGCTACTTCGTTTGTGGACGATTGGGCCATTGCCAACAGGGCCTCA
AACTCGAAGTCCAAGTTCAGGCCCAATCCAATAACAACGGAACCAACGAC
GATCAAAACCAACACGGTGGCTCTAGTAGTAGAAGACCATCTCCACGTCG
TTCTCCTCCACCGCCACGTCATCATTCTCCTCCTAGTCCTCCAGATGCGC
CTGTTAAAGAACCTTGCGATTGTTCATGTGCAGAAGAAGGTCATTGGGTT
GTGCCATTGATTACACTCGTAATCATCTTAGCTTTAACTCGCTCTTCTTT
CTTCTTCTCGCATATCTTGCTTTAG
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protein sequence of Ca_07186_v1.0_kabuli

>Ca_07186_v1.0_kabuli ID=Ca_07186_v1.0_kabuli; Name=Ca_07186_v1.0_kabuli; organism=Cicer arietinum; type=polypeptide; length=124bp
MATYNTGETVIHITEEGTRYFVCGRLGHCQQGLKLEVQVQAQSNNNGTND
DQNQHGGSSSRRPSPRRSPPPPRHHSPPSPPDAPVKEPCDCSCAEEGHWV
VPLITLVIILALTRSSFFFSHILL
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mRNA from alignment at Ca3:28782026..28782400+

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ca_07186_v1.0_kabuli ID=Ca_07186_v1.0_kabuli; Name=Ca_07186; organism=Cicer arietinum; type=mRNA; length=375bp; location=Sequence derived from: Ca3:28782026..28782400+ (Cicer arietinum
ATGGCCACGTATAACACCGGCGAAACAGTGATCCACATCACCGAAGAAGG
AACCCGCTACTTCGTTTGTGGACGATTGGGCCATTGCCAACAGGGCCTCA
AACTCGAAGTCCAAGTTCAGGCCCAATCCAATAACAACGGAACCAACGAC
GATCAAAACCAACACGGTGGCTCTAGTAGTAGAAGACCATCTCCACGTCG
TTCTCCTCCACCGCCACGTCATCATTCTCCTCCTAGTCCTCCAGATGCGC
CTGTTAAAGAACCTTGCGATTGTTCATGTGCAGAAGAAGGTCATTGGGTT
GTGCCATTGATTACACTCGTAATCATCTTAGCTTTAACTCGCTCTTCTTT
CTTCTTCTCGCATATCTTGCTTTAG
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Coding sequence (CDS) from alignment at Ca3:28782026..28782400+

>Ca_07186_v1.0_kabuli ID=Ca_07186_v1.0_kabuli; Name=Ca_07186; organism=Cicer arietinum; type=CDS; length=375bp; location=Sequence derived from: Ca3:28782026..28782400+ (Cicer arietinum
ATGGCCACGTATAACACCGGCGAAACAGTGATCCACATCACCGAAGAAGG
AACCCGCTACTTCGTTTGTGGACGATTGGGCCATTGCCAACAGGGCCTCA
AACTCGAAGTCCAAGTTCAGGCCCAATCCAATAACAACGGAACCAACGAC
GATCAAAACCAACACGGTGGCTCTAGTAGTAGAAGACCATCTCCACGTCG
TTCTCCTCCACCGCCACGTCATCATTCTCCTCCTAGTCCTCCAGATGCGC
CTGTTAAAGAACCTTGCGATTGTTCATGTGCAGAAGAAGGTCATTGGGTT
GTGCCATTGATTACACTCGTAATCATCTTAGCTTTAACTCGCTCTTCTTT
CTTCTTCTCGCATATCTTGCTTTAG
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR003245Phytocyanin_dom
IPR008972Cupredoxin
Vocabulary: Molecular Function
TermDefinition
GO:0005507copper ion binding
GO:0009055electron transfer activity