Ca_20421, Ca_20421_v1.0_kabuli (mRNA) Cicer arietinum

Transcript Overview
NameCa_20421
Unique NameCa_20421_v1.0_kabuli
TypemRNA
OrganismCicer arietinum (chickpea)
Sequence length327
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Ca3chromosomeCa3:22052087..22052579 -Cicer arietinum CDC Frontier genome v1.0n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Cicer arietinum CDC Frontier genome v1.02013-01-01
InterProScan analysis for kabuli C. arietinum unigenes2013-10-24
Homology Analysis: Kabuli C.arietinum mRNA vs TrEMBL2013-10-24
BLAST: C. arietinum CDC Frontier (kabuli), Swissprot2019-05-21
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
capsR185Pisum sativum Cameor genome v1aPisum sativum
capsR197Pisum sativum Cameor genome v1aPisum sativum
capsR224Pisum sativum Cameor genome v1aPisum sativum
cavuR171Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
cavuR194Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
capvR218Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
capvR262Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
caccR0353Cajanus cajan Asha genome v1.0Cajanus cajan
caccR0364Cajanus cajan Asha genome v1.0Cajanus cajan
caccR0371Cajanus cajan Asha genome v1.0Cajanus cajan
ancaL0021Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancaL0148Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancaL0278Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ascaL486Vigna angularis Jingnong 6 genome v1.1Vigna angularis
ascaL731Vigna angularis Jingnong 6 genome v1.1Vigna angularis
cazwsR172Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
cazwsR193Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
cavssR209Vicia sativa cv. Studenica genome v1.0Vicia sativa
cavssR263Vicia sativa cv. Studenica genome v1.0Vicia sativa
cavuaR161Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
cavuaR182Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
cacanR081Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
cacanR110Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
avjcaL182Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjcaL456Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
cacarR183Cicer arietinum
cacarR224Cicer arietinum

Orthologs
Gene/TranscriptAssemblySpecies
Va03G017770.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
LR48_mrnaVigan07g163300Vigna angularis Jingnong 6 genome v1.1Vigna angularis
Phvul.008G075300.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
rna-TanjilR_24901Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Vigun05g078900.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
rna-KK1_018871Cajanus cajan Asha genome v1.0Cajanus cajan
Va11G019070.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
Vigun10g113700.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
rna-KK1_019055Cajanus cajan Asha genome v1.0Cajanus cajan
Psat3g115360.1Pisum sativum Cameor genome v1aPisum sativum
jg10962.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
evm.model.Chr05.687Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
Psat03G0379100-T1Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
Phvul.010G085600.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
LR48_mrnaVigan03g064300Vigna angularis Jingnong 6 genome v1.1Vigna angularis

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
rna-XM_004492589.3Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Ca_20421-CDS1Ca_20421-CDS1Cicer arietinumCDS
Ca_20421-CDS2Ca_20421-CDS2Cicer arietinumCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Ca_20421_v1.0_kabuliCa_20421_v1.0_kabuliCicer arietinumpolypeptide


Homology
BLAST of Ca_20421 vs. TrEMBL
Match: G7L0A6_MEDTR (Putative uncharacterized protein OS=Medicago truncatula GN=MTR_7g075120 PE=4 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 2.304e-26
Identity = 65/97 (67.01%), Postives = 74/97 (76.29%), Query Frame = 1
Query:    1 MCCFSSQHETLYAPLFWPXXXXXXXXXXXXXXXTQLKEARQRKRMIEVKEEIKMKNLKLYMENQTIIEENEKLRKQAMLLHKENQDLMTQLQIKLSE 291
            MCCFSSQ++TLYAPL                   +L   ++RKRMIEVK +IKMKNLKLYMENQTIIE+NEKLRKQAMLLHKENQDLM+QLQ+KLSE
Sbjct:    1 MCCFSSQYDTLYAPL----------SKRHNCRHLRLSHLKRRKRMIEVKAQIKMKNLKLYMENQTIIEQNEKLRKQAMLLHKENQDLMSQLQMKLSE 87          
BLAST of Ca_20421 vs. TrEMBL
Match: I1L6T7_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 8.481e-21
Identity = 63/104 (60.58%), Postives = 70/104 (67.31%), Query Frame = 1
Query:    1 MCCFSSQHETLYA--PLFWPXXXXXXXXXXXXXXX-----TQLKEARQRKRMIEVKEEIKMKNLKLYMENQTIIEENEKLRKQAMLLHKENQDLMTQLQIKLSE 291
            MC  SS+ +TLY   P  WP                      LKEARQRKR++ VK EI+MKNLKLYMENQTIIEENEKLRKQAMLLHKENQ L++QLQ KLSE
Sbjct:    1 MCSISSK-QTLYLVLPRPWPSKRHHHNHRHLRLGMLNRRRAHLKEARQRKRIVVVKSEIQMKNLKLYMENQTIIEENEKLRKQAMLLHKENQALLSQLQKKLSE 103          
BLAST of Ca_20421 vs. TrEMBL
Match: C6SWP7_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 2.089e-19
Identity = 60/104 (57.69%), Postives = 70/104 (67.31%), Query Frame = 1
Query:    1 MCCFSSQHETLY--APLF---WPXXXXXXXXXXXXXXX--TQLKEARQRKRMIEVKEEIKMKNLKLYMENQTIIEENEKLRKQAMLLHKENQDLMTQLQIKLSE 291
            MC FSS+  + Y   PL    WP                  QL+EAR+RKRMI +K EIKM+NLKLYMENQ+IIEENEKLRKQA+LLHKEN+ L+ QLQ KLSE
Sbjct:    1 MCSFSSEQSSPYDDLPLVHPPWPSKRQPQHLRFSLHKRRRAQLQEARRRKRMIILKTEIKMRNLKLYMENQSIIEENEKLRKQAVLLHKENEALLFQLQKKLSE 104          
BLAST of Ca_20421 vs. TrEMBL
Match: K7MU03_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 7.938e-19
Identity = 62/103 (60.19%), Postives = 68/103 (66.02%), Query Frame = 1
Query:    1 MCCFSSQHETLYAPLFWPXXXXXXXXXXXXXXX-------TQLKEARQRKRMIEVKEEIKMKNLKLYMENQTIIEENEKLRKQAMLLHKENQDLMTQLQIKLS 288
            MC FSS+ +TLY  L  P                        LKEARQRKR++ VK EI+MKNLKLYMENQTIIEENEKLRKQAMLLHKENQ L +QLQ KLS
Sbjct:    1 MCSFSSK-QTLYLALPRPWTSKRHHHSHRHLRLGMLNRRRAHLKEARQRKRIV-VKSEIQMKNLKLYMENQTIIEENEKLRKQAMLLHKENQALSSQLQKKLS 101          
BLAST of Ca_20421 vs. TrEMBL
Match: C6T5U8_SOYBN (Putative uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 5.145e-18
Identity = 61/103 (59.22%), Postives = 67/103 (65.05%), Query Frame = 1
Query:    1 MCCFSSQHETLYAPLFWPXXXXXXXXXXXXXXX-------TQLKEARQRKRMIEVKEEIKMKNLKLYMENQTIIEENEKLRKQAMLLHKENQDLMTQLQIKLS 288
            MC FSS+ +TLY  L  P                        LKEARQRKR++ VK EI+MKNLKLYMENQTIIEENEKLRKQAMLLHK NQ L +QLQ KLS
Sbjct:    1 MCSFSSK-QTLYLALPRPWTSKRHHHSHRHLRLGMLNRRRAHLKEARQRKRIV-VKSEIQMKNLKLYMENQTIIEENEKLRKQAMLLHKGNQALSSQLQKKLS 101          
BLAST of Ca_20421 vs. TrEMBL
Match: I1J7Y8_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 4.355e-17
Identity = 50/64 (78.12%), Postives = 57/64 (89.06%), Query Frame = 1
Query:  103 QLKEARQRKRMIEVK-EEIKMKNLKLYMENQTIIEENEKLRKQAMLLHKENQDLMTQLQIKLSE 291
            QL+EAR+RKRMI +K  EIKM+NLKLYMENQ+IIEEN+KLRKQAMLLHKEN  L+ QLQ KLSE
Sbjct:   42 QLQEARRRKRMIILKLTEIKMRNLKLYMENQSIIEENQKLRKQAMLLHKENDVLLFQLQKKLSE 105          
BLAST of Ca_20421 vs. TrEMBL
Match: K4AZ89_SOLLC (Uncharacterized protein OS=Solanum lycopersicum GN=Solyc01g091490.2 PE=4 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 9.398e-12
Identity = 35/60 (58.33%), Postives = 52/60 (86.67%), Query Frame = 1
Query:  112 EARQRKRMIEVKEEIKMKNLKLYMENQTIIEENEKLRKQAMLLHKENQDLMTQLQIKLSE 291
            EA++R ++ ++K+ +KMKNLKLY EN+ IIEENEKLRK+A+LLH+EN+DL TQ+  ++S+
Sbjct:   48 EAKKRAKLSKLKKIMKMKNLKLYEENKIIIEENEKLRKRALLLHQENKDLFTQIIQQISQ 107          
BLAST of Ca_20421 vs. TrEMBL
Match: B9IC13_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_823907 PE=4 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 3.571e-11
Identity = 36/56 (64.29%), Postives = 48/56 (85.71%), Query Frame = 1
Query:  121 QRKRMIEVKEEIKMKNLKLYMENQTIIEENEKLRKQAMLLHKENQDLMTQLQIKLS 288
            +R  ++ VK+E+++KNLKLYMEN++IIEENEKLRK+A LLH+ENQ L+ QLQ K S
Sbjct:   45 KRVALVLVKKEMEIKNLKLYMENKSIIEENEKLRKKAFLLHQENQALLYQLQKKRS 100          
BLAST of Ca_20421 vs. TrEMBL
Match: B9RDE7_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1612360 PE=4 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 6.092e-11
Identity = 34/63 (53.97%), Postives = 54/63 (85.71%), Query Frame = 1
Query:  103 QLKEARQRKRMIEVKEEIKMKNLKLYMENQTIIEENEKLRKQAMLLHKENQDLMTQLQIKLSE 291
            QL++++++K+   +K+E+++KNLKLYM+N++IIEENEKLRK+A  L++ENQ L+ QLQ K S+
Sbjct:   44 QLRQSKEKKKEGILKKEMEIKNLKLYMKNKSIIEENEKLRKKAYFLNQENQALLIQLQKKFSK 106          
BLAST of Ca_20421 vs. TrEMBL
Match: M4CL27_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis GN=Bra004913 PE=4 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 2.315e-10
Identity = 32/54 (59.26%), Postives = 47/54 (87.04%), Query Frame = 1
Query:  121 QRKRMIEVKEEIKMKNLKLYMENQTIIEENEKLRKQAMLLHKENQDLMTQLQIK 282
            +R+RM   ++E++MKN++LYMENQ II+ENEKL+K+A+LLH+EN+ L +QLQ K
Sbjct:   33 RRRRMWRKEKEMEMKNIRLYMENQYIIQENEKLKKKALLLHQENKALFSQLQTK 86          
BLAST of Ca_20421 vs. DB:Swiss
Match: ZPR2_ARATH (Protein LITTLE ZIPPER 2 OS=Arabidopsis thaliana OX=3702 GN=ZPR2 PE=1 SV=1)

HSP 1 Score: 53.9138 bits (128), Expect = 2.203e-9
Identity = 26/46 (56.52%), Postives = 35/46 (76.09%), Query Frame = 1
Query:  151 EIKMKNLKLYMENQTIIEENEKLRKQAMLLHKENQDLMTQLQIKLS 288
            E++M+NLKL++ENQ+II ENE L+K+A+LLH EN  L   L  K S
Sbjct:   52 EMEMRNLKLFVENQSIIRENEALKKKALLLHHENNALFALLHPKYS 97          
The following BLAST results are available for this feature:
BLAST of Ca_20421 vs. TrEMBL
Analysis Date: 2013-10-24 (Homology Analysis: Kabuli C.arietinum mRNA vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
G7L0A6_MEDTR2.304e-2667.01Putative uncharacterized protein OS=Medicago trunc... [more]
I1L6T7_SOYBN8.481e-2160.58Uncharacterized protein OS=Glycine max PE=4 SV=1[more]
C6SWP7_SOYBN2.089e-1957.69Uncharacterized protein OS=Glycine max PE=4 SV=1[more]
K7MU03_SOYBN7.938e-1960.19Uncharacterized protein OS=Glycine max PE=4 SV=1[more]
C6T5U8_SOYBN5.145e-1859.22Putative uncharacterized protein OS=Glycine max PE... [more]
I1J7Y8_SOYBN4.355e-1778.13Uncharacterized protein OS=Glycine max PE=4 SV=1[more]
K4AZ89_SOLLC9.398e-1258.33Uncharacterized protein OS=Solanum lycopersicum GN... [more]
B9IC13_POPTR3.571e-1164.29Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]
B9RDE7_RICCO6.092e-1153.97Putative uncharacterized protein OS=Ricinus commun... [more]
M4CL27_BRARP2.315e-1059.26Uncharacterized protein OS=Brassica rapa subsp. pe... [more]

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BLAST of Ca_20421 vs. DB:Swiss
Analysis Date: 2019-05-21 (BLAST: C. arietinum CDC Frontier (kabuli), Swissprot)
Total hits: 1
Match NameE-valueIdentityDescription
ZPR2_ARATH2.203e-956.52Protein LITTLE ZIPPER 2 OS=Arabidopsis thaliana OX... [more]
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InterPro
Analysis Name: InterProScan analysis for kabuli C. arietinum unigenes
Date Performed: 2013-10-24
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILcoilcoiled-coilcoord: 63..102
score
NoneNo IPR availableSEGsegsegcoord: 19..33
score: NAcoord: 99..107
score
NoneNo IPR availableSEGsegsegcoord: 8..24
score: NAcoord: 28..44
score

Sequences
The following sequences are available for this feature:

mRNA sequence

>Ca_20421_v1.0_kabuli ID=Ca_20421_v1.0_kabuli; Name=Ca_20421; organism=Cicer arietinum; type=mRNA; length=327bp
ATGTGTTGTTTCTCTTCACAACATGAGACCCTTTATGCCCCTCTCTTTTG
GCCTTCCAAGAGACACCACCTTAGGTTGAGCCACCTCAAAAGAAGGAGAA
CACAATTGAAAGAAGCAAGACAAAGGAAAAGGATGATTGAGGTGAAAGAA
GAGATTAAGATGAAAAACTTGAAATTGTATATGGAGAATCAAACCATCAT
AGAGGAGAATGAAAAGTTAAGGAAACAAGCTATGCTTTTGCACAAAGAGA
ATCAAGACCTTATGACTCAGCTCCAAATTAAGCTTTCAGAACTAAACAAC
AATACCAAAAATAATAACAAGCTATGA
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protein sequence of Ca_20421_v1.0_kabuli

>Ca_20421_v1.0_kabuli ID=Ca_20421_v1.0_kabuli; Name=Ca_20421_v1.0_kabuli; organism=Cicer arietinum; type=polypeptide; length=108bp
MCCFSSQHETLYAPLFWPSKRHHLRLSHLKRRRTQLKEARQRKRMIEVKE
EIKMKNLKLYMENQTIIEENEKLRKQAMLLHKENQDLMTQLQIKLSELNN
NTKNNNKL
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mRNA from alignment at Ca3:22052087..22052579-

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ca_20421_v1.0_kabuli ID=Ca_20421_v1.0_kabuli; Name=Ca_20421; organism=Cicer arietinum; type=mRNA; length=493bp; location=Sequence derived from: Ca3:22052087..22052579- (Cicer arietinum
ATGTGTTGTTTCTCTTCACAACATGAGACCCTTTATGCCCCTCTCTTTTG GCCTTCCAAGAGACACCACCTTAGGTTGAGCCACCTCAAAAGGTACTCTC TTTTCTTAATTATTATTTTGTATAATTTATATTTATATATATACACTATT TTTTTATTGTTTTTTATATATAGCTTTTATATGTGCATACATAATATATA CATGTTATTGTGTGTTTAACATTAATATTGATATTAATTTATATAATTGG TGATGTAGAAGGAGAACACAATTGAAAGAAGCAAGACAAAGGAAAAGGAT GATTGAGGTGAAAGAAGAGATTAAGATGAAAAACTTGAAATTGTATATGG AGAATCAAACCATCATAGAGGAGAATGAAAAGTTAAGGAAACAAGCTATG CTTTTGCACAAAGAGAATCAAGACCTTATGACTCAGCTCCAAATTAAGCT TTCAGAACTAAACAACAATACCAAAAATAATAACAAGCTATGA
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Coding sequence (CDS) from alignment at Ca3:22052087..22052579-

>Ca_20421_v1.0_kabuli ID=Ca_20421_v1.0_kabuli; Name=Ca_20421; organism=Cicer arietinum; type=CDS; length=327bp; location=Sequence derived from: Ca3:22052087..22052579- (Cicer arietinum
ATGTGTTGTTTCTCTTCACAACATGAGACCCTTTATGCCCCTCTCTTTTG
GCCTTCCAAGAGACACCACCTTAGGTTGAGCCACCTCAAAAGAAGGAGAA
CACAATTGAAAGAAGCAAGACAAAGGAAAAGGATGATTGAGGTGAAAGAA
GAGATTAAGATGAAAAACTTGAAATTGTATATGGAGAATCAAACCATCAT
AGAGGAGAATGAAAAGTTAAGGAAACAAGCTATGCTTTTGCACAAAGAGA
ATCAAGACCTTATGACTCAGCTCCAAATTAAGCTTTCAGAACTAAACAAC
AATACCAAAAATAATAACAAGCTATGA
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