Ca_20421, Ca_20421_v1.0_kabuli (mRNA) Cicer arietinum
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of Ca_20421 vs. TrEMBL
Match: G7L0A6_MEDTR (Putative uncharacterized protein OS=Medicago truncatula GN=MTR_7g075120 PE=4 SV=1) HSP 1 Score: 123.635 bits (309), Expect = 2.304e-26 Identity = 65/97 (67.01%), Postives = 74/97 (76.29%), Query Frame = 1 Query: 1 MCCFSSQHETLYAPLFWPXXXXXXXXXXXXXXXTQLKEARQRKRMIEVKEEIKMKNLKLYMENQTIIEENEKLRKQAMLLHKENQDLMTQLQIKLSE 291 MCCFSSQ++TLYAPL +L ++RKRMIEVK +IKMKNLKLYMENQTIIE+NEKLRKQAMLLHKENQDLM+QLQ+KLSE Sbjct: 1 MCCFSSQYDTLYAPL----------SKRHNCRHLRLSHLKRRKRMIEVKAQIKMKNLKLYMENQTIIEQNEKLRKQAMLLHKENQDLMSQLQMKLSE 87
BLAST of Ca_20421 vs. TrEMBL
Match: I1L6T7_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1) HSP 1 Score: 105.145 bits (261), Expect = 8.481e-21 Identity = 63/104 (60.58%), Postives = 70/104 (67.31%), Query Frame = 1 Query: 1 MCCFSSQHETLYA--PLFWPXXXXXXXXXXXXXXX-----TQLKEARQRKRMIEVKEEIKMKNLKLYMENQTIIEENEKLRKQAMLLHKENQDLMTQLQIKLSE 291 MC SS+ +TLY P WP LKEARQRKR++ VK EI+MKNLKLYMENQTIIEENEKLRKQAMLLHKENQ L++QLQ KLSE Sbjct: 1 MCSISSK-QTLYLVLPRPWPSKRHHHNHRHLRLGMLNRRRAHLKEARQRKRIVVVKSEIQMKNLKLYMENQTIIEENEKLRKQAMLLHKENQALLSQLQKKLSE 103
BLAST of Ca_20421 vs. TrEMBL
Match: C6SWP7_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1) HSP 1 Score: 100.523 bits (249), Expect = 2.089e-19 Identity = 60/104 (57.69%), Postives = 70/104 (67.31%), Query Frame = 1 Query: 1 MCCFSSQHETLY--APLF---WPXXXXXXXXXXXXXXX--TQLKEARQRKRMIEVKEEIKMKNLKLYMENQTIIEENEKLRKQAMLLHKENQDLMTQLQIKLSE 291 MC FSS+ + Y PL WP QL+EAR+RKRMI +K EIKM+NLKLYMENQ+IIEENEKLRKQA+LLHKEN+ L+ QLQ KLSE Sbjct: 1 MCSFSSEQSSPYDDLPLVHPPWPSKRQPQHLRFSLHKRRRAQLQEARRRKRMIILKTEIKMRNLKLYMENQSIIEENEKLRKQAVLLHKENEALLFQLQKKLSE 104
BLAST of Ca_20421 vs. TrEMBL
Match: K7MU03_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1) HSP 1 Score: 98.5969 bits (244), Expect = 7.938e-19 Identity = 62/103 (60.19%), Postives = 68/103 (66.02%), Query Frame = 1 Query: 1 MCCFSSQHETLYAPLFWPXXXXXXXXXXXXXXX-------TQLKEARQRKRMIEVKEEIKMKNLKLYMENQTIIEENEKLRKQAMLLHKENQDLMTQLQIKLS 288 MC FSS+ +TLY L P LKEARQRKR++ VK EI+MKNLKLYMENQTIIEENEKLRKQAMLLHKENQ L +QLQ KLS Sbjct: 1 MCSFSSK-QTLYLALPRPWTSKRHHHSHRHLRLGMLNRRRAHLKEARQRKRIV-VKSEIQMKNLKLYMENQTIIEENEKLRKQAMLLHKENQALSSQLQKKLS 101
BLAST of Ca_20421 vs. TrEMBL
Match: C6T5U8_SOYBN (Putative uncharacterized protein OS=Glycine max PE=4 SV=1) HSP 1 Score: 95.9005 bits (237), Expect = 5.145e-18 Identity = 61/103 (59.22%), Postives = 67/103 (65.05%), Query Frame = 1 Query: 1 MCCFSSQHETLYAPLFWPXXXXXXXXXXXXXXX-------TQLKEARQRKRMIEVKEEIKMKNLKLYMENQTIIEENEKLRKQAMLLHKENQDLMTQLQIKLS 288 MC FSS+ +TLY L P LKEARQRKR++ VK EI+MKNLKLYMENQTIIEENEKLRKQAMLLHK NQ L +QLQ KLS Sbjct: 1 MCSFSSK-QTLYLALPRPWTSKRHHHSHRHLRLGMLNRRRAHLKEARQRKRIV-VKSEIQMKNLKLYMENQTIIEENEKLRKQAMLLHKGNQALSSQLQKKLS 101
BLAST of Ca_20421 vs. TrEMBL
Match: I1J7Y8_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1) HSP 1 Score: 92.8189 bits (229), Expect = 4.355e-17 Identity = 50/64 (78.12%), Postives = 57/64 (89.06%), Query Frame = 1 Query: 103 QLKEARQRKRMIEVK-EEIKMKNLKLYMENQTIIEENEKLRKQAMLLHKENQDLMTQLQIKLSE 291 QL+EAR+RKRMI +K EIKM+NLKLYMENQ+IIEEN+KLRKQAMLLHKEN L+ QLQ KLSE Sbjct: 42 QLQEARRRKRMIILKLTEIKMRNLKLYMENQSIIEENQKLRKQAMLLHKENDVLLFQLQKKLSE 105
BLAST of Ca_20421 vs. TrEMBL
Match: K4AZ89_SOLLC (Uncharacterized protein OS=Solanum lycopersicum GN=Solyc01g091490.2 PE=4 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 9.398e-12 Identity = 35/60 (58.33%), Postives = 52/60 (86.67%), Query Frame = 1 Query: 112 EARQRKRMIEVKEEIKMKNLKLYMENQTIIEENEKLRKQAMLLHKENQDLMTQLQIKLSE 291 EA++R ++ ++K+ +KMKNLKLY EN+ IIEENEKLRK+A+LLH+EN+DL TQ+ ++S+ Sbjct: 48 EAKKRAKLSKLKKIMKMKNLKLYEENKIIIEENEKLRKRALLLHQENKDLFTQIIQQISQ 107
BLAST of Ca_20421 vs. TrEMBL
Match: B9IC13_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_823907 PE=4 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 3.571e-11 Identity = 36/56 (64.29%), Postives = 48/56 (85.71%), Query Frame = 1 Query: 121 QRKRMIEVKEEIKMKNLKLYMENQTIIEENEKLRKQAMLLHKENQDLMTQLQIKLS 288 +R ++ VK+E+++KNLKLYMEN++IIEENEKLRK+A LLH+ENQ L+ QLQ K S Sbjct: 45 KRVALVLVKKEMEIKNLKLYMENKSIIEENEKLRKKAFLLHQENQALLYQLQKKRS 100
BLAST of Ca_20421 vs. TrEMBL
Match: B9RDE7_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1612360 PE=4 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 6.092e-11 Identity = 34/63 (53.97%), Postives = 54/63 (85.71%), Query Frame = 1 Query: 103 QLKEARQRKRMIEVKEEIKMKNLKLYMENQTIIEENEKLRKQAMLLHKENQDLMTQLQIKLSE 291 QL++++++K+ +K+E+++KNLKLYM+N++IIEENEKLRK+A L++ENQ L+ QLQ K S+ Sbjct: 44 QLRQSKEKKKEGILKKEMEIKNLKLYMKNKSIIEENEKLRKKAYFLNQENQALLIQLQKKFSK 106
BLAST of Ca_20421 vs. TrEMBL
Match: M4CL27_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis GN=Bra004913 PE=4 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 2.315e-10 Identity = 32/54 (59.26%), Postives = 47/54 (87.04%), Query Frame = 1 Query: 121 QRKRMIEVKEEIKMKNLKLYMENQTIIEENEKLRKQAMLLHKENQDLMTQLQIK 282 +R+RM ++E++MKN++LYMENQ II+ENEKL+K+A+LLH+EN+ L +QLQ K Sbjct: 33 RRRRMWRKEKEMEMKNIRLYMENQYIIQENEKLKKKALLLHQENKALFSQLQTK 86
BLAST of Ca_20421 vs. DB:Swiss
Match: ZPR2_ARATH (Protein LITTLE ZIPPER 2 OS=Arabidopsis thaliana OX=3702 GN=ZPR2 PE=1 SV=1) HSP 1 Score: 53.9138 bits (128), Expect = 2.203e-9 Identity = 26/46 (56.52%), Postives = 35/46 (76.09%), Query Frame = 1 Query: 151 EIKMKNLKLYMENQTIIEENEKLRKQAMLLHKENQDLMTQLQIKLS 288 E++M+NLKL++ENQ+II ENE L+K+A+LLH EN L L K S Sbjct: 52 EMEMRNLKLFVENQSIIRENEALKKKALLLHHENNALFALLHPKYS 97 The following BLAST results are available for this feature:
BLAST of Ca_20421 vs. TrEMBL
Analysis Date: 2013-10-24 (Homology Analysis: Kabuli C.arietinum mRNA vs TrEMBL) Total hits: 25
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BLAST of Ca_20421 vs. DB:Swiss
Analysis Date: 2019-05-21 (BLAST: C. arietinum CDC Frontier (kabuli), Swissprot) Total hits: 1
InterPro
Analysis Name: InterProScan analysis for kabuli C. arietinum unigenes
Date Performed: 2013-10-24
Sequences
The
following sequences are available for this feature:
mRNA sequence >Ca_20421_v1.0_kabuli ID=Ca_20421_v1.0_kabuli; Name=Ca_20421; organism=Cicer arietinum; type=mRNA; length=327bpback to top protein sequence of Ca_20421_v1.0_kabuli >Ca_20421_v1.0_kabuli ID=Ca_20421_v1.0_kabuli; Name=Ca_20421_v1.0_kabuli; organism=Cicer arietinum; type=polypeptide; length=108bpback to top mRNA from alignment at Ca3:22052087..22052579- Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below.>Ca_20421_v1.0_kabuli ID=Ca_20421_v1.0_kabuli; Name=Ca_20421; organism=Cicer arietinum; type=mRNA; length=493bp; location=Sequence derived from: Ca3:22052087..22052579- (Cicer arietinumback to top Coding sequence (CDS) from alignment at Ca3:22052087..22052579- >Ca_20421_v1.0_kabuli ID=Ca_20421_v1.0_kabuli; Name=Ca_20421; organism=Cicer arietinum; type=CDS; length=327bp; location=Sequence derived from: Ca3:22052087..22052579- (Cicer arietinumback to top |