Ca_03593, Ca_03593_v1.0_kabuli (mRNA) Cicer arietinum

Transcript Overview
NameCa_03593
Unique NameCa_03593_v1.0_kabuli
TypemRNA
OrganismCicer arietinum (chickpea)
Sequence length267
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Ca4chromosomeCa4:6481264..6481530 +Cicer arietinum CDC Frontier genome v1.0n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Cicer arietinum CDC Frontier genome v1.02013-01-01
InterProScan analysis for kabuli C. arietinum unigenes2013-10-24
Homology Analysis: Kabuli C.arietinum mRNA vs TrEMBL2013-10-24
BLAST: C. arietinum CDC Frontier (kabuli), Swissprot2019-05-21
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
capsR253Pisum sativum Cameor genome v1aPisum sativum
capsR277Pisum sativum Cameor genome v1aPisum sativum
capsR364Pisum sativum Cameor genome v1aPisum sativum
capsR365Pisum sativum Cameor genome v1aPisum sativum
cavuR258Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
cavuR310Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
cavuR318Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
capvR313Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
capvR362Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
capvR398Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
caccR0438Cajanus cajan Asha genome v1.0Cajanus cajan
caccR0506Cajanus cajan Asha genome v1.0Cajanus cajan
caccR0527Cajanus cajan Asha genome v1.0Cajanus cajan
ancaL0440Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancaL0445Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancaL0634Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancaL0697Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancaL0826Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancaL0828Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancaL1121Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ascaL393Vigna angularis Jingnong 6 genome v1.1Vigna angularis
ascaL409Vigna angularis Jingnong 6 genome v1.1Vigna angularis
ascaL492Vigna angularis Jingnong 6 genome v1.1Vigna angularis
cazwsR247Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
cazwsR279Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
cazwsR313Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
catifR289Vicia faba cv. Tiffany genome v1.0Vicia faba
cavfhR286Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
catifR323Vicia faba cv. Tiffany genome v1.0Vicia faba
catifR338Vicia faba cv. Tiffany genome v1.0Vicia faba
catifR345Vicia faba cv. Tiffany genome v1.0Vicia faba
cavfhR310Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
cavfhR349Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
cavssR332Vicia sativa cv. Studenica genome v1.0Vicia sativa
cavssR377Vicia sativa cv. Studenica genome v1.0Vicia sativa
cavssR387Vicia sativa cv. Studenica genome v1.0Vicia sativa
cavssR395Vicia sativa cv. Studenica genome v1.0Vicia sativa
cavuaR244Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
cavuaR282Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
cavuaR308Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
cacanR125Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
cacanR131Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
cacanR139Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
avjcaL255Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjcaL257Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjcaL366Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjcaL377Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjcaL467Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
cacarR278Cicer arietinum
cacarR286Cicer arietinum
cacarR316Cicer arietinum

Orthologs
Gene/TranscriptAssemblySpecies
Psat6g156960.1Pisum sativum Cameor genome v1aPisum sativum
jg2940.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Ca_03593-CDS1Ca_03593-CDS1Cicer arietinumCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Ca_03593_v1.0_kabuliCa_03593_v1.0_kabuliCicer arietinumpolypeptide


Homology
[Close]
BLAST of Ca_03593 vs. TrEMBL
Match: G7IAC0_MEDTR (Putative uncharacterized protein OS=Medicago truncatula GN=MTR_1g084920 PE=4 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 5.348e-20
Identity = 48/60 (80.00%), Postives = 50/60 (83.33%), Query Frame = 1 
Query:   85 RTGYYDGTYTDSGRKIWPSDDDKGNWGVAEPNINRRAEDFIRKYKNRVSESERYQFDPAA 264
            R GYYD    D G K WPSD+DKGNWGVAEPNIN RAEDFIRKYKNR+SESERYQ DPAA
Sbjct:   26 RAGYYD----DCGCKTWPSDEDKGNWGVAEPNINSRAEDFIRKYKNRISESERYQVDPAA 81
[Close]
BLAST of Ca_03593 vs. TrEMBL
Match: G7IAB4_MEDTR (Putative uncharacterized protein OS=Medicago truncatula GN=MTR_1g084840 PE=4 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 6.984e-20
Identity = 51/84 (60.71%), Postives = 54/84 (64.29%), Query Frame = 1 
Query:   13 GNRQXXXXXXXXXXXXXXXXXXXXRTGYYDGTYTDSGRKIWPSDDDKGNWGVAEPNINRRAEDFIRKYKNRVSESERYQFDPAA 264
            GNRQ                    R GYYD    D GRK WPSD+DKGNWGVAEPNINRRA+DFIRKYKN +SESE YQ DPAA
Sbjct:    4 GNRQNKSSSGFFSIFNCFTSKNKSRAGYYD----DCGRKTWPSDEDKGNWGVAEPNINRRAKDFIRKYKNHISESECYQVDPAA 83
[Close]
BLAST of Ca_03593 vs. TrEMBL
Match: I1LAZ2_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 5.534e-17
Identity = 44/60 (73.33%), Postives = 48/60 (80.00%), Query Frame = 1 
Query:   85 RTGYYDGTYTDSGRKIWPSDDDKGNWGVAEPNINRRAEDFIRKYKNRVSESERYQFDPAA 264
            R GYYD +  DSGRK+WPSD DKGNWGVAEPNI+ +AE FI KYK RVSES  YQ DPAA
Sbjct:   26 RGGYYDAS--DSGRKVWPSDYDKGNWGVAEPNIDMKAEAFIAKYKKRVSESALYQLDPAA 83
[Close]
BLAST of Ca_03593 vs. TrEMBL
Match: I1LAZ1_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 1.610e-16
Identity = 43/60 (71.67%), Postives = 47/60 (78.33%), Query Frame = 1 
Query:   85 RTGYYDGTYTDSGRKIWPSDDDKGNWGVAEPNINRRAEDFIRKYKNRVSESERYQFDPAA 264
            R GYYD    DS R++WPSDDDKGNWGVAEPNI+ +AE FI KYK RVSES  YQ DPAA
Sbjct:   27 RGGYYDAP--DSWRRVWPSDDDKGNWGVAEPNIDMKAEAFIAKYKKRVSESALYQLDPAA 84
[Close]
BLAST of Ca_03593 vs. TrEMBL
Match: K7N2G8_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.176e-13
Identity = 40/60 (66.67%), Postives = 45/60 (75.00%), Query Frame = 1 
Query:   85 RTGYYDGTYTDSGRKIWPSDDDKGNWGVAEPNINRRAEDFIRKYKNRVSESERYQFDPAA 264
            R GY D    DS R+++PSD DKGNWGVAEPNI+ +AE FI KYK RVSES  YQ DPAA
Sbjct:   27 RGGYSDAP--DSWRRVYPSDYDKGNWGVAEPNIDMKAEAFIAKYKKRVSESALYQLDPAA 84
[Close]
BLAST of Ca_03593 vs. TrEMBL
Match: I1NEU2_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.176e-13
Identity = 40/60 (66.67%), Postives = 45/60 (75.00%), Query Frame = 1 
Query:   85 RTGYYDGTYTDSGRKIWPSDDDKGNWGVAEPNINRRAEDFIRKYKNRVSESERYQFDPAA 264
            R GY D    DS R+++PSD DKGNWGVAEPNI+ +AE FI KYK RVSES  YQ DPAA
Sbjct:   26 RGGYSDAP--DSWRRVYPSDYDKGNWGVAEPNIDMKAEAFIAKYKKRVSESALYQLDPAA 83
[Close]
BLAST of Ca_03593 vs. TrEMBL
Match: K7LJE2_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 4.848e-13
Identity = 39/58 (67.24%), Postives = 44/58 (75.86%), Query Frame = 1 
Query:   91 GYYDGTYTDSGRKIWPSDDDKGNWGVAEPNINRRAEDFIRKYKNRVSESERYQFDPAA 264
            GY D    DS R+++PSD DKGNWGVAEPNI+ +AE FI KYK RVSES  YQ DPAA
Sbjct:   29 GYSDAP--DSWRRVYPSDYDKGNWGVAEPNIDMKAEAFIAKYKKRVSESALYQLDPAA 84
[Close]
BLAST of Ca_03593 vs. TrEMBL
Match: I1NEU1_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 6.332e-13
Identity = 39/60 (65.00%), Postives = 45/60 (75.00%), Query Frame = 1 
Query:   85 RTGYYDGTYTDSGRKIWPSDDDKGNWGVAEPNINRRAEDFIRKYKNRVSESERYQFDPAA 264
            R GY D    DS R+++PSD DKGNWGVAEPNI+ +AE FI KYK RVSES  YQ +PAA
Sbjct:   27 RGGYSDAP--DSWRRVYPSDYDKGNWGVAEPNIDMKAEAFIAKYKKRVSESALYQLEPAA 84
[Close]
BLAST of Ca_03593 vs. TrEMBL
Match: K7LJE3_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 3.252e-9
Identity = 30/53 (56.60%), Postives = 39/53 (73.58%), Query Frame = 1 
Query:   91 GYYDGTYTDSGR---KIWPSDDDKGNWGVAEPNINRRAEDFIRKYKNRVSESE 240
            G+YD  Y D+ +   K+WPSD+D+G WGVA+P I+ RA  FI +YK RVSESE
Sbjct:   29 GHYDANYDDAPKQWTKVWPSDEDRGRWGVADPVIDLRATAFIAQYKKRVSESE 81
[Close]
BLAST of Ca_03593 vs. TrEMBL
Match: K7KGI4_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 65.0846 bits (157), Expect = 9.462e-9
Identity = 30/49 (61.22%), Postives = 36/49 (73.47%), Query Frame = 1 
Query:   94 YYDGTYTDSGRKIWPSDDDKGNWGVAEPNINRRAEDFIRKYKNRVSESE 240
            +YD     SG KIWPSD+DKG WGVA+P I+ RA  +I +YK RVSESE
Sbjct:   34 FYDEGPKVSGTKIWPSDEDKGRWGVADPVIDMRATAYIAQYKKRVSESE 82
The following BLAST results are available for this feature:
BLAST of Ca_03593 vs. TrEMBL
Analysis Date: 2013-10-24 (Homology Analysis: Kabuli C.arietinum mRNA vs TrEMBL)
Total hits: 14
Match NameE-valueIdentityDescription
G7IAC0_MEDTR5.348e-2080.00Putative uncharacterized protein OS=Medicago trunc... [more]
G7IAB4_MEDTR6.984e-2060.71Putative uncharacterized protein OS=Medicago trunc... [more]
I1LAZ2_SOYBN5.534e-1773.33Uncharacterized protein OS=Glycine max PE=4 SV=1[more]
I1LAZ1_SOYBN1.610e-1671.67Uncharacterized protein OS=Glycine max PE=4 SV=2[more]
K7N2G8_SOYBN2.176e-1366.67Uncharacterized protein OS=Glycine max PE=4 SV=1[more]
I1NEU2_SOYBN2.176e-1366.67Uncharacterized protein OS=Glycine max PE=4 SV=1[more]
K7LJE2_SOYBN4.848e-1367.24Uncharacterized protein OS=Glycine max PE=4 SV=1[more]
I1NEU1_SOYBN6.332e-1365.00Uncharacterized protein OS=Glycine max PE=4 SV=1[more]
K7LJE3_SOYBN3.252e-956.60Uncharacterized protein OS=Glycine max PE=4 SV=1[more]
K7KGI4_SOYBN9.462e-961.22Uncharacterized protein OS=Glycine max PE=4 SV=1[more]

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BLAST of Ca_03593 vs. DB:Swiss
Analysis Date: 2019-05-21 (BLAST: C. arietinum CDC Frontier (kabuli), Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan analysis for kabuli C. arietinum unigenes
Date Performed: 2013-10-24
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSEGsegsegcoord: 9..28
score

Sequences
The following sequences are available for this feature:

mRNA sequence

>Ca_03593_v1.0_kabuli ID=Ca_03593_v1.0_kabuli; Name=Ca_03593; organism=Cicer arietinum; type=mRNA; length=267bp
ATGGGTGCTACTGGTAATAGGCAAAAAAAATCTTCTAGTGGTTTCTTCTC
ATTTTTCAAAATCTTCACATCTAAGAATAAATCTAGAACAGGGTACTATG
ATGGTACTTACACTGATTCAGGACGCAAGATATGGCCTAGTGATGATGAC
AAAGGAAATTGGGGTGTTGCTGAGCCTAATATTAACAGGAGAGCTGAAGA
TTTCATCCGCAAATACAAGAATCGCGTTTCAGAATCAGAACGCTACCAAT
TTGATCCAGCTGCCTAG
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protein sequence of Ca_03593_v1.0_kabuli

>Ca_03593_v1.0_kabuli ID=Ca_03593_v1.0_kabuli; Name=Ca_03593_v1.0_kabuli; organism=Cicer arietinum; type=polypeptide; length=88bp
MGATGNRQKKSSSGFFSFFKIFTSKNKSRTGYYDGTYTDSGRKIWPSDDD
KGNWGVAEPNINRRAEDFIRKYKNRVSESERYQFDPAA
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mRNA from alignment at Ca4:6481264..6481530+

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ca_03593_v1.0_kabuli ID=Ca_03593_v1.0_kabuli; Name=Ca_03593; organism=Cicer arietinum; type=mRNA; length=267bp; location=Sequence derived from: Ca4:6481264..6481530+ (Cicer arietinum
ATGGGTGCTACTGGTAATAGGCAAAAAAAATCTTCTAGTGGTTTCTTCTC
ATTTTTCAAAATCTTCACATCTAAGAATAAATCTAGAACAGGGTACTATG
ATGGTACTTACACTGATTCAGGACGCAAGATATGGCCTAGTGATGATGAC
AAAGGAAATTGGGGTGTTGCTGAGCCTAATATTAACAGGAGAGCTGAAGA
TTTCATCCGCAAATACAAGAATCGCGTTTCAGAATCAGAACGCTACCAAT
TTGATCCAGCTGCCTAG
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Coding sequence (CDS) from alignment at Ca4:6481264..6481530+

>Ca_03593_v1.0_kabuli ID=Ca_03593_v1.0_kabuli; Name=Ca_03593; organism=Cicer arietinum; type=CDS; length=267bp; location=Sequence derived from: Ca4:6481264..6481530+ (Cicer arietinum
ATGGGTGCTACTGGTAATAGGCAAAAAAAATCTTCTAGTGGTTTCTTCTC
ATTTTTCAAAATCTTCACATCTAAGAATAAATCTAGAACAGGGTACTATG
ATGGTACTTACACTGATTCAGGACGCAAGATATGGCCTAGTGATGATGAC
AAAGGAAATTGGGGTGTTGCTGAGCCTAATATTAACAGGAGAGCTGAAGA
TTTCATCCGCAAATACAAGAATCGCGTTTCAGAATCAGAACGCTACCAAT
TTGATCCAGCTGCCTAG
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