Ca_14446, Ca_14446_v1.0_kabuli (mRNA) Cicer arietinum

Transcript Overview
NameCa_14446
Unique NameCa_14446_v1.0_kabuli
TypemRNA
OrganismCicer arietinum (chickpea)
Sequence length330
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Ca4chromosomeCa4:23338997..23340763 +Cicer arietinum CDC Frontier genome v1.0n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Cicer arietinum CDC Frontier genome v1.02013-01-01
Homology Analysis: Kabuli C.arietinum mRNA vs TrEMBL2013-10-24
BLAST: C. arietinum CDC Frontier (kabuli), Swissprot2019-05-21
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
capsR255Pisum sativum Cameor genome v1aPisum sativum
capsR338Pisum sativum Cameor genome v1aPisum sativum
cavuR260Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
cavuR266Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
cavuR292Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
cavuR319Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
capvR315Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
capvR328Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
capvR356Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
capvR365Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
caccR0435Cajanus cajan Asha genome v1.0Cajanus cajan
ancaL0592Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancaL0691Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancaL0900Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancaL0904Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancaL1059Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancaL1201Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
cazwsR250Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
cazwsR301Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
catifR295Vicia faba cv. Tiffany genome v1.0Vicia faba
catifR347Vicia faba cv. Tiffany genome v1.0Vicia faba
cavfhR291Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
cavfhR351Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
cavrvR284Vigna radiata cv. VC1973A genome v6.0Vigna radiata
cavrvR295Vigna radiata cv. VC1973A genome v6.0Vigna radiata
cavrvR364Vigna radiata cv. VC1973A genome v6.0Vigna radiata
cavssR316Vicia sativa cv. Studenica genome v1.0Vicia sativa
cavssR335Vicia sativa cv. Studenica genome v1.0Vicia sativa
cavssR382Vicia sativa cv. Studenica genome v1.0Vicia sativa
cavuaR246Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
cavuaR299Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
cacanR128Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
cacanR131Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
cacanR152Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
avjcaL072Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjcaL379Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjcaL476Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
cacarR281Cicer arietinum
cacarR305Cicer arietinum
cacarR332Cicer arietinum
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Ca_14446-CDS1Ca_14446-CDS1Cicer arietinumCDS
Ca_14446-CDS2Ca_14446-CDS2Cicer arietinumCDS
Ca_14446-CDS3Ca_14446-CDS3Cicer arietinumCDS
Ca_14446-CDS4Ca_14446-CDS4Cicer arietinumCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Ca_14446_v1.0_kabuliCa_14446_v1.0_kabuliCicer arietinumpolypeptide


Homology
BLAST of Ca_14446 vs. TrEMBL
Match: K7M4H4_SOYBN (Uncharacterized protein (Fragment) OS=Glycine max PE=4 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 1.637e-40
Identity = 86/108 (79.63%), Postives = 95/108 (87.96%), Query Frame = 1
Query:    4 IPGNDMLYYGDSSYKQELVSLSKVVLENLICVVQQEPSKTARGSMALEACNCVASSFTLSNEVSSICLTLIETAKSCLSAQDRCLQSTIRLVNKQLPTFAGTMVSTSV 327
            IPGNDMLYYGDSSY QELVSLSK+VLENL+  VQQEPS+ ARG MALEACNC+ASSF LSNE+ S CLTL+ETAKSCLSA+DR LQSTI+L+NKQ PT  GTMVST V
Sbjct:  844 IPGNDMLYYGDSSYNQELVSLSKLVLENLLSAVQQEPSQAARGIMALEACNCIASSFMLSNELLSSCLTLVETAKSCLSAKDRYLQSTIQLLNKQSPTSVGTMVSTFV 951          
BLAST of Ca_14446 vs. TrEMBL
Match: K7M4H3_SOYBN (Uncharacterized protein (Fragment) OS=Glycine max PE=4 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 1.637e-40
Identity = 86/108 (79.63%), Postives = 95/108 (87.96%), Query Frame = 1
Query:    4 IPGNDMLYYGDSSYKQELVSLSKVVLENLICVVQQEPSKTARGSMALEACNCVASSFTLSNEVSSICLTLIETAKSCLSAQDRCLQSTIRLVNKQLPTFAGTMVSTSV 327
            IPGNDMLYYGDSSY QELVSLSK+VLENL+  VQQEPS+ ARG MALEACNC+ASSF LSNE+ S CLTL+ETAKSCLSA+DR LQSTI+L+NKQ PT  GTMVST V
Sbjct:  845 IPGNDMLYYGDSSYNQELVSLSKLVLENLLSAVQQEPSQAARGIMALEACNCIASSFMLSNELLSSCLTLVETAKSCLSAKDRYLQSTIQLLNKQSPTSVGTMVSTFV 952          
BLAST of Ca_14446 vs. TrEMBL
Match: F6HEQ7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_19s0090g00870 PE=4 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 1.589e-27
Identity = 61/99 (61.62%), Postives = 83/99 (83.84%), Query Frame = 1
Query:    4 IPGNDMLYYGDSSYKQELVSLSKVVLENLICVVQQEPSKTARGSMALEACNCVASSFTLSNEVSSICLTLIETAKSCLSAQDRCLQSTIRLVNKQLPTF 300
            I GND+L++GDS+Y Q+LVSLS+ VLE L  V+QQEPS+ ARGSMALEACNC+ASSF +S E+S IC  L+ETA+ CLS+ ++ LQST++L+ ++LP+F
Sbjct:  639 ILGNDLLFFGDSTYLQDLVSLSEFVLEELCNVIQQEPSQAARGSMALEACNCIASSFKVSPEISPICSKLMETAQLCLSSNNKYLQSTMKLLGERLPSF 737          
BLAST of Ca_14446 vs. TrEMBL
Match: A5C2C7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_003049 PE=4 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 1.589e-27
Identity = 61/99 (61.62%), Postives = 83/99 (83.84%), Query Frame = 1
Query:    4 IPGNDMLYYGDSSYKQELVSLSKVVLENLICVVQQEPSKTARGSMALEACNCVASSFTLSNEVSSICLTLIETAKSCLSAQDRCLQSTIRLVNKQLPTF 300
            I GND+L++GDS+Y Q+LVSLS+ VLE L  V+QQEPS+ ARGSMALEACNC+ASSF +S E+S IC  L+ETA+ CLS+ ++ LQST++L+ ++LP+F
Sbjct:  403 ILGNDLLFFGDSTYLQDLVSLSEFVLEELCNVIQQEPSQAARGSMALEACNCIASSFKVSPEISPICSKLMETAQLCLSSNNKYLQSTMKLLGERLPSF 501          
BLAST of Ca_14446 vs. TrEMBL
Match: B9GJD9_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_753181 PE=4 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 8.720e-26
Identity = 56/96 (58.33%), Postives = 75/96 (78.12%), Query Frame = 1
Query:    4 IPGNDMLYYGDSSYKQELVSLSKVVLENLICVVQQEPSKTARGSMALEACNCVASSFTLSNEVSSICLTLIETAKSCLSAQDRCLQSTIRLVNKQL 291
            I GND+L++GD SY  E+ +LS+ VL+NLI  ++QEP K ARG+MALEACNC+ASSF +  ++  +C  LIETA+ CLSA DR LQSTI+ +N+QL
Sbjct:  191 IMGNDLLFFGDPSYAHEIAALSECVLQNLISFIEQEPPKAARGTMALEACNCIASSFVVCQDILEVCWKLIETARLCLSADDRYLQSTIKYLNEQL 286          
BLAST of Ca_14446 vs. TrEMBL
Match: B9STX6_RICCO (Esophageal cancer associated protein, putative OS=Ricinus communis GN=RCOM_0752350 PE=4 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 1.139e-25
Identity = 58/99 (58.59%), Postives = 76/99 (76.77%), Query Frame = 1
Query:    4 IPGNDMLYYGDSSYKQELVSLSKVVLENLICVVQQEPSKTARGSMALEACNCVASSFTLSNEVSSICLTLIETAKSCLSAQDRCLQSTIRLVNKQLPTF 300
            I GND+LY+GDSSY  ELVS+S+ VL NL+  ++ EPSK ARGS+ALEACNC+A SF +S ++  +C  LIETA+ CLS  DR LQSTI+ +++ LP F
Sbjct:  819 ILGNDLLYFGDSSYVHELVSMSESVLWNLVKFIELEPSKAARGSLALEACNCIALSFKVSEDILQVCWKLIETAELCLSTNDRFLQSTIKYLDEHLPNF 917          
BLAST of Ca_14446 vs. TrEMBL
Match: R0IQV1_9BRAS (Uncharacterized protein OS=Capsella rubella GN=CARUB_v10008246mg PE=4 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 2.223e-21
Identity = 47/88 (53.41%), Postives = 70/88 (79.55%), Query Frame = 1
Query:    4 IPGNDMLYYGDSSYKQELVSLSKVVLENLICVVQQEPSKTARGSMALEACNCVASSFTLSNEVSSICLTLIETAKSCLSAQDRCLQST 267
            I GND+L++GDSSYKQELVS +++VL  L+  +++E S+  RG++ALEACNC++S+  ++ +VS +CL L+ETAK CL A DR ++ST
Sbjct:  824 IIGNDLLFFGDSSYKQELVSFTQLVLGELLNAIEKESSQIVRGNLALEACNCISSALVMNEKVSQVCLRLLETAKGCLGANDRYMEST 911          
BLAST of Ca_14446 vs. TrEMBL
Match: F4I6L0_ARATH (Uncharacterized protein OS=Arabidopsis thaliana GN=AT1G50730 PE=4 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 2.223e-21
Identity = 47/88 (53.41%), Postives = 70/88 (79.55%), Query Frame = 1
Query:    4 IPGNDMLYYGDSSYKQELVSLSKVVLENLICVVQQEPSKTARGSMALEACNCVASSFTLSNEVSSICLTLIETAKSCLSAQDRCLQST 267
            I GN++L++GDSSYKQELVS +++VL  L+  ++QE S+ +RG+MALEACNC++S+  ++ +V  +CL L+ETAK CL A DR ++ST
Sbjct:  826 IIGNELLFFGDSSYKQELVSCTQLVLSELLDAIEQESSQISRGNMALEACNCISSALVMNEKVKELCLRLLETAKGCLGANDRYIEST 913          
BLAST of Ca_14446 vs. TrEMBL
Match: M4DQS9_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis GN=Bra018872 PE=4 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 4.191e-20
Identity = 53/113 (46.90%), Postives = 77/113 (68.14%), Query Frame = 1
Query:    4 IPGNDMLYYGDSSYKQELVSLSKVVLENLICVVQQEPSKTARGSMALEACNCVASSFTLSNEVSSICLTLIETAKSCLSAQD------RCLQSTIRLVNKQLPTFAGTMVSTS 324
            I GND+L++GDSSYK ELVS +++V+  L+  ++QE S+ ARG++ALEACNC++S+  ++ +VS +CL L+ETAK CL A D      R  + T  L  KQ+  F  +  STS
Sbjct:  811 IIGNDLLFFGDSSYKNELVSWTQLVVGELVDAIEQESSQIARGNIALEACNCISSALVMNEKVSQLCLRLLETAKGCLGATDSTSVLNRHAKQTESLGRKQVFLFLSSSPSTS 923          
BLAST of Ca_14446 vs. TrEMBL
Match: Q9C6T6_ARATH (Putative uncharacterized protein F4M15.4 OS=Arabidopsis thaliana GN=F4M15.4 PE=4 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 1.593e-19
Identity = 44/82 (53.66%), Postives = 65/82 (79.27%), Query Frame = 1
Query:    4 IPGNDMLYYGDSSYKQELVSLSKVVLENLICVVQQEPSKTARGSMALEACNCVASSFTLSNEVSSICLTLIETAKSCLSAQD 249
            I GN++L++GDSSYKQELVS +++VL  L+  ++QE S+ +RG+MALEACNC++S+  ++ +V  +CL L+ETAK CL A D
Sbjct:  826 IIGNELLFFGDSSYKQELVSCTQLVLSELLDAIEQESSQISRGNMALEACNCISSALVMNEKVKELCLRLLETAKGCLGAND 907          
The following BLAST results are available for this feature:
BLAST of Ca_14446 vs. TrEMBL
Analysis Date: 2013-10-24 (Homology Analysis: Kabuli C.arietinum mRNA vs TrEMBL)
Total hits: 15
Match NameE-valueIdentityDescription
K7M4H4_SOYBN1.637e-4079.63Uncharacterized protein (Fragment) OS=Glycine max ... [more]
K7M4H3_SOYBN1.637e-4079.63Uncharacterized protein (Fragment) OS=Glycine max ... [more]
F6HEQ7_VITVI1.589e-2761.62Putative uncharacterized protein OS=Vitis vinifera... [more]
A5C2C7_VITVI1.589e-2761.62Putative uncharacterized protein OS=Vitis vinifera... [more]
B9GJD9_POPTR8.720e-2658.33Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]
B9STX6_RICCO1.139e-2558.59Esophageal cancer associated protein, putative OS=... [more]
R0IQV1_9BRAS2.223e-2153.41Uncharacterized protein OS=Capsella rubella GN=CAR... [more]
F4I6L0_ARATH2.223e-2153.41Uncharacterized protein OS=Arabidopsis thaliana GN... [more]
M4DQS9_BRARP4.191e-2046.90Uncharacterized protein OS=Brassica rapa subsp. pe... [more]
Q9C6T6_ARATH1.593e-1953.66Putative uncharacterized protein F4M15.4 OS=Arabid... [more]

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BLAST of Ca_14446 vs. DB:Swiss
Analysis Date: 2019-05-21 (BLAST: C. arietinum CDC Frontier (kabuli), Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
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Sequences
The following sequences are available for this feature:

mRNA sequence

>Ca_14446_v1.0_kabuli ID=Ca_14446_v1.0_kabuli; Name=Ca_14446; organism=Cicer arietinum; type=mRNA; length=330bp
ATGATACCAGGCAATGACATGTTATACTATGGCGATTCATCTTACAAGCA
AGAACTTGTTTCTTTGTCTAAGGTTGTTCTTGAGAACCTAATTTGTGTCG
TTCAACAAGAACCTTCTAAGACTGCTCGAGGAAGTATGGCTCTTGAAGCT
TGCAATTGTGTTGCATCATCTTTCACGCTAAGCAATGAAGTATCCTCTAT
TTGCCTTACACTTATTGAAACAGCCAAGTCATGTTTGAGTGCCCAAGACA
GATGCCTCCAATCAACCATTCGACTTGTAAACAAGCAGTTACCAACTTTT
GCAGGGACCATGGTGTCTACTTCTGTATGA
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protein sequence of Ca_14446_v1.0_kabuli

>Ca_14446_v1.0_kabuli ID=Ca_14446_v1.0_kabuli; Name=Ca_14446_v1.0_kabuli; organism=Cicer arietinum; type=polypeptide; length=109bp
MIPGNDMLYYGDSSYKQELVSLSKVVLENLICVVQQEPSKTARGSMALEA
CNCVASSFTLSNEVSSICLTLIETAKSCLSAQDRCLQSTIRLVNKQLPTF
AGTMVSTSV
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mRNA from alignment at Ca4:23338997..23340763+

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ca_14446_v1.0_kabuli ID=Ca_14446_v1.0_kabuli; Name=Ca_14446; organism=Cicer arietinum; type=mRNA; length=1767bp; location=Sequence derived from: Ca4:23338997..23340763+ (Cicer arietinum
ATGGTTTGTAGCCTTTATTATTTATGTATGATGTATCTTAATTTCTGAGA TGTACTTTTTTTCTTTTCCAGATACCAGGCAATGACATGTTATACTATGG CGATTCATCTTACAAGCAAGAACTTGTTTCTTTGTCTAAGGTTGTTCTTG AGAACCTAATTTGTGTCGTTCAACAAGAACCTTCTAAGGTATCTTCAGCG TGGTTTAGTTAACACTGTTTGATTTATTTGACAAATTTAATCGGTACTGA TTTATTAATTTTTGCTAAATTGTAGACTGCTCGAGGAAGTATGGCTCTTG AAGCTTGCAATTGTGTTGCATCATCTTTCACGGTAAAATGTCGTATAATT GTTTTTTTCAGCTTTCCATTCAACCCTTTGTAATCAATCTAATTATTTAT GATGTGGGAAAAATTACGAAGGAAAAAGGAGGCTAAAAACTTAAAATTAA TTGTACTTCAGTCTCTCTACTATAACTAATATGATTTTGGTCCTTCAATA TTTTCTTGAGTGACTTGTAATAGTTAAGACTTTCCGTAACTTTTATTCCA AACTTTCAAATTATTGGTTTCTATTTAAAATCAACACGGATTGATTTGTA TTAAACCTTATTCTATTCAAATTTCTAAACTGAAATTTCACTCAATTTCA TAAAGAACAAAAGGATATCAATCTTTTCCCGCCTCAATTCCTACAAAATC TTTCAAATTTTGACTAAATTGTCAAAATTATTTCATATTCCAAATGCATC ATAAATCATCAAATATTTGAAATGAAAAATGATAATAACCTCAAGTTTGT AAAAATAATATAAAAGACAAGACCAAATTTGCTTAATTTTAAAATTACGG GGATTTAATTGGCTTGGAAAAAACTCTAGGGACTAAAATCACTCAGTCTA AATTATATGGACTAAAGTAAAATTACACTTAAAATTTATACATTCTTGAC AACTATTTCCAATTTTGATAGAAATAACAAGACAATGGGGTGTACTTAAA TTAACAGTAGATAACACATAAACCACATCTCTCTCTGTCTACACTAATAT GGATCCTTTGCAGTTGGGTTTTAGGTGTAGCCAGCTGCGCTGTTAGATTA AGAGAGAATCTCTTTTAATCTAACCTACCCACGCGAGTATCTCTGCTCCC TTTTGAGTTTGAGATTAAATAGGCTAGAAGTTTTTAGTGACAAATTATCT CCTATTCCTTCTCTGCTATTAGAATTTTATGTTATATAGTGTTCAGTGTA TCAGTATCACATAGTTTGTAGCATTTTACTAGTAAAGGGAGAGGCAGATG AACCGTCCTTGTCCCTGCAGGCTTGCTGCATTTCTCAGAAGTTCAACAAA ACTGGTTGTTCTCTATTTCACCCATAAATAACCTTATTTGTGAAAAATAT CTTATAACCCACCTACCAAAATTTAATTGAATAAAACAGTCAGAATATGC ATGTTTCTGATACAAAGGTTGCTTTAGAGAAGCTGAGTCCCCGTGGTAAT ATTCTAGCGGGACATGGAACATTTCCTTGTTGGAAACTATTCATTATTTT GTAGCATATCACTTATTCAAAATAAACCTTAAAATGTTGATCCGTGATGT TTCTTGTTTGGCAGCTAAGCAATGAAGTATCCTCTATTTGCCTTACACTT ATTGAAACAGCCAAGTCATGTTTGAGTGCCCAAGACAGATGCCTCCAATC AACCATTCGACTTGTAAACAAGCAGTTACCAACTTTTGCAGGGACCATGG TGTCTACTTCTGTATGA
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Coding sequence (CDS) from alignment at Ca4:23338997..23340763+

>Ca_14446_v1.0_kabuli ID=Ca_14446_v1.0_kabuli; Name=Ca_14446; organism=Cicer arietinum; type=CDS; length=330bp; location=Sequence derived from: Ca4:23338997..23340763+ (Cicer arietinum
ATGATACCAGGCAATGACATGTTATACTATGGCGATTCATCTTACAAGCA
AGAACTTGTTTCTTTGTCTAAGGTTGTTCTTGAGAACCTAATTTGTGTCG
TTCAACAAGAACCTTCTAAGACTGCTCGAGGAAGTATGGCTCTTGAAGCT
TGCAATTGTGTTGCATCATCTTTCACGCTAAGCAATGAAGTATCCTCTAT
TTGCCTTACACTTATTGAAACAGCCAAGTCATGTTTGAGTGCCCAAGACA
GATGCCTCCAATCAACCATTCGACTTGTAAACAAGCAGTTACCAACTTTT
GCAGGGACCATGGTGTCTACTTCTGTATGA
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