Ca_19071, Ca_19071_v1.0_kabuli (mRNA) Cicer arietinum

Transcript Overview


Name	Ca_19071
Unique Name	Ca_19071_v1.0_kabuli
Type	mRNA
Organism	Cicer arietinum (chickpea)
Sequence length	1338

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
Ca4	chromosome	Ca4:21603139..21604585 -	Cicer arietinum CDC Frontier genome v1.0	n/a

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Cicer arietinum CDC Frontier genome v1.0	2013-01-01
InterProScan analysis for kabuli C. arietinum unigenes	2013-10-24
Homology Analysis: Kabuli C.arietinum mRNA vs TrEMBL	2013-10-24
BLAST: C. arietinum CDC Frontier (kabuli), Swissprot	2019-05-21

Orthologs

Syntenic blocks


Syntentic block	Assembly	Species
capvR302	Phaseolus vulgaris G19833 genome v2.1	Phaseolus vulgaris
capvR389	Phaseolus vulgaris G19833 genome v2.1	Phaseolus vulgaris
caccR0453	Cajanus cajan Asha genome v1.0	Cajanus cajan
caccR0519	Cajanus cajan Asha genome v1.0	Cajanus cajan
cazwsR254	Pisum sativum cv. Zhongwan6 genome v1.0	Pisum sativum
cazwsR256	Pisum sativum cv. Zhongwan6 genome v1.0	Pisum sativum
cazwsR283	Pisum sativum cv. Zhongwan6 genome v1.0	Pisum sativum
cazwsR320	Pisum sativum cv. Zhongwan6 genome v1.0	Pisum sativum
cavrvR287	Vigna radiata cv. VC1973A genome v6.0	Vigna radiata
cavrvR367	Vigna radiata cv. VC1973A genome v6.0	Vigna radiata
cavuaR237	Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0	Vigna unguiculata subsp. sesquipedalis
cavuaR285	Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0	Vigna unguiculata subsp. sesquipedalis
cacanR131	Cicer arietinum CDC Frontier NCBI RefSeq v1	Cicer arietinum

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
Ca_19071-CDS1	Ca_19071-CDS1	Cicer arietinum	CDS
Ca_19071-CDS2	Ca_19071-CDS2	Cicer arietinum	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
Ca_19071_v1.0_kabuli	Ca_19071_v1.0_kabuli	Cicer arietinum	polypeptide

Homology

[Close]

BLAST of Ca_19071 vs. TrEMBL
Match: K7MNX2_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.348e-14
Identity = 62/277 (22.38%), Postives = 117/277 (42.24%), Query Frame = 1

Query:  319 DFLKRKIHEGRTLDFAYFDSEGFSFQDHLRFHGLENFLSSTLDSYP-----------------------RITISWNIYRWQSDADTADQGWE---------TSFDRYTAVKDLMIDGFVETYSLPAGQMKVQHRMLMYTLTRMLVPRSGNHVVVQKLDILLLWGLSKELRMSWTWIVLRHMLEASQSKLVLPYPQLITKILKHFKVSL--VNEESSKTTLIFGESIVNQMQLKRLHGIWIRPQPNV----------------EPAQSNPQQAPETAP 999
            DFL R +   + +DF YF + G  FQ+ L   GL+ F+S     YP                       ++ I      W + A+   +G +           F R  A+  ++            G + ++ R+L Y    +L+PR  N+ +V   DI +LW + + ++++W +++ +HM +   + + LPY  LITKI++  ++ L   NE     +  F +  + ++++ ++ G+W     N+                E  Q +  QAP+  P
Sbjct:  276 DFLLRDLVHPKIMDFDYFVTSGLQFQELLSVQGLDAFVSLEDTYYPNLIKVFYANLTILDNGDLCSEVCKVKIRVKPRDWLAIANLKYEGQKFQLSKLPDNIGFHRGQALDAMVRPDLQGRNCKNTGSLTIEDRLLHYAFVHILMPRGSNYALVLMEDIFILWAIKQRIQINWPYLICQHMKKCKVNGMPLPYGLLITKIMEFHRIHLGAENESLPGWSNRFNQKSLKKLKVIQVDGVWQHSDQNMSMPMEHGEEDGDSESAEKPQGSQPQAPQVTP 552

[Close]

BLAST of Ca_19071 vs. TrEMBL
Match: B9RZE7_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0938660 PE=4 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 4.683e-8
Identity = 85/378 (22.49%), Postives = 146/378 (38.62%), Query Frame = 1

Query:  316 SDFLKRKIHEGRTLDFAYFDSEGFSFQDHLRFHGLENFLSSTLDSYPRITISWNIYRWQSDADTA----------------------------------DQGW---ETSFDRYTAVKDLMI--DGFVETYSLPAGQMKVQHRMLMYTLTRMLVPRSGNHVVVQKLDILLLWGLSKELRMSWTWIVLRHMLEASQSK-LVLPYPQLITKILKHFKVSLVNEESS--KTTLIFGESIVNQMQLKRLHGIW-----------IRPQPNVE------------------PAQSNPQQAP-ETAPPEYVAKLLVFIEVQMAHNAKMQESQAR--------MEANLKTLQA-----SLNSVVQDVDAIPAHLGIKQSFEDIADI 1194
            S F+  +   GR++D  +F+ EGF      +     +F+      YP +   +       DAD A                                  D  W   +    R  A K L+   D  V +  + A  +K++ R+L   +  +++PR  +   V  +D+L++W +   +  +  +++L HM+  S+ K   LPY  ++T I KHFKVSL  EE    K++ I+ E  + +M   +    W           I  Q N+                   PA S P   P  +APP     ++   E   A +   Q S  +        M+ +++T+        L S + ++ ++   LGIK+    IADI
Sbjct:   50 SRFIYGETVPGRSIDLGFFNQEGFQLGKWFKHMNWVSFILIKEKFYPELVRHFYA-NLSFDADKAQINSFVKGKEIRLNQKSLKKIIGIPNFGTEICENDYKWVENDVGISRVEAFKMLLENPDSSVVSSKVDACHLKLEMRLLHLMVVHIILPRKRSLNCVSDMDLLVMWHILNGMDFNLPFVLLSHMVACSEKKNAYLPYGMMLTLIFKHFKVSLEEEECKELKSSDIYSEVTLRKMGYVKSEKGWFLKKDKAVAHPILSQENLNVSEIQDSPATQLSLAISAPANSLPDPNPASSAPPS--PNVVFSAEEGRAPDKARQPSVVQGVFLLVIAMQEDMRTMTMGSKLDDLQSKIGNLRSLITQLGIKRQERTIADI 424

[Close]

BLAST of Ca_19071 vs. TrEMBL
Match: G7KJN9_MEDTR (Putative uncharacterized protein OS=Medicago truncatula GN=MTR_6g074960 PE=4 SV=1)

HSP 1 Score: 61.2326 bits (147), Expect = 8.832e-7
Identity = 46/179 (25.70%), Postives = 79/179 (44.13%), Query Frame = 1

Query:  598 AGQMKVQHRMLMYTLTRMLVPRSGNHVVVQKLDILLLWGLSK----ELRMSWTWIVLRHMLEASQSK---LVLPYPQLITKILKHFKVSLVNEESSKTTLIFGESIVNQMQLKRLHGIWIRPQPNVEPAQSNPQQAPETAP-PEYVAKLLVFIEVQMAHNAKMQESQARMEANLKTLQA 1110
            + Q+K++ ++L       L+P +GN   V   D+L++  LS     E R+   + +++HM+ AS SK     +PY  L+T++  HF V+L NE       IF  + V  M+        + P  +++   S  Q+  E  P P  V +   F +V  +              N  T+ A
Sbjct:  289 SSQLKLEFKILHSLCLFNLLPHTGNKNKVSDNDLLIMHYLSSSPSAETRIDLAYPIIQHMIIASNSKYKNFTVPYGMLLTRVFDHFNVNLSNEHCESAVKIFNLNNVKHMKKNPETENHVSPAASIDTPGSKRQRTEEVPPNPPQVFQTEFFQQVPPSPPTANHNIDLNKNLNFNTMHA 467

The following BLAST results are available for this feature:

BLAST of Ca_19071 vs. TrEMBL
BLAST of Ca_19071 vs. DB:Swiss

BLAST of Ca_19071 vs. TrEMBL
Analysis Date: 2013-10-24 (Homology Analysis: Kabuli C.arietinum mRNA vs TrEMBL)
Total hits: 3


Match Name	E-value	Identity	Description
K7MNX2_SOYBN	3.348e-14	22.38	Uncharacterized protein OS=Glycine max PE=4 SV=1	[more]
B9RZE7_RICCO	4.683e-8	22.49	Putative uncharacterized protein OS=Ricinus commun...	[more]
G7KJN9_MEDTR	8.832e-7	25.70	Putative uncharacterized protein OS=Medicago trunc...	[more]

BLAST of Ca_19071 vs. DB:Swiss
Analysis Date: 2019-05-21 (BLAST: C. arietinum CDC Frontier (kabuli), Swissprot)
Total hits: 0


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterProScan analysis for kabuli C. arietinum unigenes
Date Performed: 2013-10-24


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COIL	coil	coiled-coil	coord: 351..372 score
None	No IPR available	SEG	seg	seg	coord: 6..30 score: NAcoord: 76..98 score
None	No IPR available	SEG	seg	seg	coord: 29..41 score
None	No IPR available	SEG	seg	seg	coord: 35..53 score

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at Ca4:21603139..21604585-
coding sequence from alignment at Ca4:21603139..21604585-

mRNA sequence

>Ca_19071_v1.0_kabuli ID=Ca_19071_v1.0_kabuli; Name=Ca_19071; organism=Cicer arietinum; type=mRNA; length=1338bp
ATGGCACGAGTTAAGCAAACTCAAACACGAACTCCATCACCATCATCTTC
ATCAAGTGGGCGAACCCCTTCACCTCCACCTACATTGACTAAAAGGGTTC
CCATTCCTACTCATAAGATTCTTGCCAAGGATAAAAGCAAGGCACCTACT
GTTAATCAAGAGAAATCCAAGAAGAGAAAGGAGCCACCCACTGAGACGCT
TATGGCTGACGCCATGAAGGAAATATCTCAGAAGAAGAAGAATAAACCAG
TTTCTTCTCCTCCACCTAAGAAAGCTCCTTCATCTAAGGATAAAGAGGTA
GAAGCTACTATACCATCTGACTTTCTTAAAAGAAAAATCCATGAGGGTCG
GACTCTGGATTTTGCTTACTTTGATTCAGAAGGATTCAGTTTCCAAGACC
ATTTGAGGTTTCATGGTCTTGAAAACTTTCTTTCATCAACTCTTGATAGT
TATCCAAGGATTACCATTTCATGGAACATCTATAGATGGCAGTCTGATGC
TGACACTGCTGACCAAGGATGGGAAACATCGTTTGATAGGTATACTGCTG
TTAAGGATCTGATGATTGATGGCTTTGTTGAAACATATTCACTGCCTGCT
GGTCAAATGAAGGTCCAACATCGAATGCTTATGTATACTCTGACCCGGAT
GCTTGTGCCACGATCCGGTAACCATGTTGTAGTCCAGAAGTTGGATATAC
TACTGCTATGGGGATTGTCCAAGGAACTCAGGATGAGCTGGACATGGATT
GTGCTAAGACACATGTTGGAGGCATCACAGAGTAAACTTGTACTGCCTTA
TCCTCAACTGATTACCAAGATTCTGAAACACTTCAAGGTATCACTTGTTA
ATGAAGAATCTTCCAAGACCACTCTTATTTTTGGAGAATCAATTGTAAAC
CAGATGCAATTGAAAAGGTTACATGGTATTTGGATAAGACCACAGCCGAA
TGTTGAACCAGCTCAATCTAATCCTCAACAAGCTCCTGAAACAGCCCCTC
CTGAGTATGTCGCAAAACTGCTGGTATTTATAGAAGTTCAGATGGCTCAC
AATGCCAAAATGCAAGAGTCACAGGCTAGAATGGAAGCTAATTTGAAGAC
TCTCCAAGCATCTCTGAACTCAGTTGTTCAGGATGTTGATGCAATTCCAG
CGCATTTAGGCATAAAGCAGTCATTTGAAGATATAGCAGATATCGATCGG
CAAGCAACAGAGGAACCAAACCCAACTCCCCTAGATCGTTCTGCAACTCA
CGTTGAGGAGACACCTGCTGAGGGTAATACAGCGGTCTCTGCCTCTCCCT
TAGATAATAGTGAGGACCATCCCAGTTTAGGAGATTAG

protein sequence of Ca_19071_v1.0_kabuli

>Ca_19071_v1.0_kabuli ID=Ca_19071_v1.0_kabuli; Name=Ca_19071_v1.0_kabuli; organism=Cicer arietinum; type=polypeptide; length=445bp
MARVKQTQTRTPSPSSSSSGRTPSPPPTLTKRVPIPTHKILAKDKSKAPT
VNQEKSKKRKEPPTETLMADAMKEISQKKKNKPVSSPPPKKAPSSKDKEV
EATIPSDFLKRKIHEGRTLDFAYFDSEGFSFQDHLRFHGLENFLSSTLDS
YPRITISWNIYRWQSDADTADQGWETSFDRYTAVKDLMIDGFVETYSLPA
GQMKVQHRMLMYTLTRMLVPRSGNHVVVQKLDILLLWGLSKELRMSWTWI
VLRHMLEASQSKLVLPYPQLITKILKHFKVSLVNEESSKTTLIFGESIVN
QMQLKRLHGIWIRPQPNVEPAQSNPQQAPETAPPEYVAKLLVFIEVQMAH
NAKMQESQARMEANLKTLQASLNSVVQDVDAIPAHLGIKQSFEDIADIDR
QATEEPNPTPLDRSATHVEETPAEGNTAVSASPLDNSEDHPSLGD

mRNA from alignment at Ca4:21603139..21604585-

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ca_19071_v1.0_kabuli ID=Ca_19071_v1.0_kabuli; Name=Ca_19071; organism=Cicer arietinum; type=mRNA; length=1447bp; location=Sequence derived from: Ca4:21603139..21604585- (Cicer arietinum
ATGGCACGAGTTAAGCAAACTCAAACACGAACTCCATCACCATCATCTTC
ATCAAGTGGGCGAACCCCTTCACCTCCACCTACATTGACTAAAAGGGTTC
CCATTCCTACTCATAAGATTCTTGCCAAGGATAAAAGCAAGGCACCTACT
GTTAATCAAGAGAAATCCAAGAAGAGAAAGGAGCCACCCACTGAGACGCT
TATGGCTGACGCCATGAAGGAAATATCTCAGAAGAAGAAGAATAAACCAG
TTTCTTCTCCTCCACCTAAGAAAGCTCCTTCATCTAAGGATAAAGAGGTA
GAAGCTACTATACCATCTGACTTTCTTAAAAGAAAAATCCATGAGGGTCG
GACTCTGGATTTTGCTTACTTTGATTCAGAAGGATTCAGTTTCCAAGACC
ATTTGAGGTTTCATGGTCTTGAAAACTTTCTTTCATCAACTCTTGATAGT
TATCCAAGGTTAATAAGGGAATTCTTCTCAACTTTCAAGCTTACTGAAGA
CGATTCAAAGCTCAAGTTAAAGGGAAAAGGATATCTATGTCCTTTAAAGA
TTTTTCTAATTTGTCAGGATTACCATTTCATGGAACATCTATAGATGGCA
GTCTGATGCTGACACTGCTGACCAAGGATGGGAAACATCGTTTGATAGGT
ATACTGCTGTTAAGGATCTGATGATTGATGGCTTTGTTGAAACATATTCA
CTGCCTGCTGGTCAAATGAAGGTCCAACATCGAATGCTTATGTATACTCT
GACCCGGATGCTTGTGCCACGATCCGGTAACCATGTTGTAGTCCAGAAGT
TGGATATACTACTGCTATGGGGATTGTCCAAGGAACTCAGGATGAGCTGG
ACATGGATTGTGCTAAGACACATGTTGGAGGCATCACAGAGTAAACTTGT
ACTGCCTTATCCTCAACTGATTACCAAGATTCTGAAACACTTCAAGGTAT
CACTTGTTAATGAAGAATCTTCCAAGACCACTCTTATTTTTGGAGAATCA
ATTGTAAACCAGATGCAATTGAAAAGGTTACATGGTATTTGGATAAGACC
ACAGCCGAATGTTGAACCAGCTCAATCTAATCCTCAACAAGCTCCTGAAA
CAGCCCCTCCTGAGTATGTCGCAAAACTGCTGGTATTTATAGAAGTTCAG
ATGGCTCACAATGCCAAAATGCAAGAGTCACAGGCTAGAATGGAAGCTAA
TTTGAAGACTCTCCAAGCATCTCTGAACTCAGTTGTTCAGGATGTTGATG
CAATTCCAGCGCATTTAGGCATAAAGCAGTCATTTGAAGATATAGCAGAT
ATCGATCGGCAAGCAACAGAGGAACCAAACCCAACTCCCCTAGATCGTTC
TGCAACTCACGTTGAGGAGACACCTGCTGAGGGTAATACAGCGGTCTCTG
CCTCTCCCTTAGATAATAGTGAGGACCATCCCAGTTTAGGAGATTAG

Coding sequence (CDS) from alignment at Ca4:21603139..21604585-

>Ca_19071_v1.0_kabuli ID=Ca_19071_v1.0_kabuli; Name=Ca_19071; organism=Cicer arietinum; type=CDS; length=1338bp; location=Sequence derived from: Ca4:21603139..21604585- (Cicer arietinum
ATGGCACGAGTTAAGCAAACTCAAACACGAACTCCATCACCATCATCTTC
ATCAAGTGGGCGAACCCCTTCACCTCCACCTACATTGACTAAAAGGGTTC
CCATTCCTACTCATAAGATTCTTGCCAAGGATAAAAGCAAGGCACCTACT
GTTAATCAAGAGAAATCCAAGAAGAGAAAGGAGCCACCCACTGAGACGCT
TATGGCTGACGCCATGAAGGAAATATCTCAGAAGAAGAAGAATAAACCAG
TTTCTTCTCCTCCACCTAAGAAAGCTCCTTCATCTAAGGATAAAGAGGTA
GAAGCTACTATACCATCTGACTTTCTTAAAAGAAAAATCCATGAGGGTCG
GACTCTGGATTTTGCTTACTTTGATTCAGAAGGATTCAGTTTCCAAGACC
ATTTGAGGTTTCATGGTCTTGAAAACTTTCTTTCATCAACTCTTGATAGT
TATCCAAGGATTACCATTTCATGGAACATCTATAGATGGCAGTCTGATGC
TGACACTGCTGACCAAGGATGGGAAACATCGTTTGATAGGTATACTGCTG
TTAAGGATCTGATGATTGATGGCTTTGTTGAAACATATTCACTGCCTGCT
GGTCAAATGAAGGTCCAACATCGAATGCTTATGTATACTCTGACCCGGAT
GCTTGTGCCACGATCCGGTAACCATGTTGTAGTCCAGAAGTTGGATATAC
TACTGCTATGGGGATTGTCCAAGGAACTCAGGATGAGCTGGACATGGATT
GTGCTAAGACACATGTTGGAGGCATCACAGAGTAAACTTGTACTGCCTTA
TCCTCAACTGATTACCAAGATTCTGAAACACTTCAAGGTATCACTTGTTA
ATGAAGAATCTTCCAAGACCACTCTTATTTTTGGAGAATCAATTGTAAAC
CAGATGCAATTGAAAAGGTTACATGGTATTTGGATAAGACCACAGCCGAA
TGTTGAACCAGCTCAATCTAATCCTCAACAAGCTCCTGAAACAGCCCCTC
CTGAGTATGTCGCAAAACTGCTGGTATTTATAGAAGTTCAGATGGCTCAC
AATGCCAAAATGCAAGAGTCACAGGCTAGAATGGAAGCTAATTTGAAGAC
TCTCCAAGCATCTCTGAACTCAGTTGTTCAGGATGTTGATGCAATTCCAG
CGCATTTAGGCATAAAGCAGTCATTTGAAGATATAGCAGATATCGATCGG
CAAGCAACAGAGGAACCAAACCCAACTCCCCTAGATCGTTCTGCAACTCA
CGTTGAGGAGACACCTGCTGAGGGTAATACAGCGGTCTCTGCCTCTCCCT
TAGATAATAGTGAGGACCATCCCAGTTTAGGAGATTAG

Search form

Ca_19071, Ca_19071_v1.0_kabuli (mRNA) Cicer arietinum