Ca_01847, Ca_01847_v1.0_kabuli (mRNA) Cicer arietinum

Transcript Overview
NameCa_01847
Unique NameCa_01847_v1.0_kabuli
TypemRNA
OrganismCicer arietinum (chickpea)
Sequence length576
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Ca5chromosomeCa5:34034638..34036306 -Cicer arietinum CDC Frontier genome v1.0n/a
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
capsR381Pisum sativum Cameor genome v1aPisum sativum
capsR382Pisum sativum Cameor genome v1aPisum sativum
capsR432Pisum sativum Cameor genome v1aPisum sativum
cavuR422Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
cavuR434Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
capvR428Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
capvR512Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
caccR0713Cajanus cajan Asha genome v1.0Cajanus cajan
ancaL0331Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancaL0383Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancaL0765Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancaL0773Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
cazwsR353Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
cazwsR388Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
catifR400Vicia faba cv. Tiffany genome v1.0Vicia faba
catifR418Vicia faba cv. Tiffany genome v1.0Vicia faba
cavfhR402Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
cavfhR420Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
cavrvR409Vigna radiata cv. VC1973A genome v6.0Vigna radiata
cavrvR431Vigna radiata cv. VC1973A genome v6.0Vigna radiata
cavssR438Vicia sativa cv. Studenica genome v1.0Vicia sativa
cavssR464Vicia sativa cv. Studenica genome v1.0Vicia sativa
cavuaR387Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
cavuaR421Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
cacanR182Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
cacanR189Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
avjcaL546Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjcaL748Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
cacarR374Cicer arietinum
cacarR393Cicer arietinum

Orthologs
Gene/TranscriptAssemblySpecies
rna-XM_014649791.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
Vfaba.Tiffany.R1.2g153600.1Vicia faba cv. Tiffany genome v1.0Vicia faba
Va07G059590.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
Vfaba.Hedin2.R1.3g199760.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
Psat06G0091600-T1Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
jg35865.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
rna-TanjilR_07925Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
evm.model.Chr08.87Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
Psat5g025200.1Pisum sativum Cameor genome v1aPisum sativum
Vigun08g065400.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
Phvul.001G060500.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
jg55538.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Vfaba.Tiffany.R1.3g164720.1Vicia faba cv. Tiffany genome v1.0Vicia faba

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
rna-XM_004501173.3Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
rna-XM_004498505.2Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Ca_01847-CDS1Ca_01847-CDS1Cicer arietinumCDS
Ca_01847-CDS2Ca_01847-CDS2Cicer arietinumCDS
Ca_01847-CDS3Ca_01847-CDS3Cicer arietinumCDS
Ca_01847-CDS4Ca_01847-CDS4Cicer arietinumCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Ca_01847_v1.0_kabuliCa_01847_v1.0_kabuliCicer arietinumpolypeptide


Homology
[Close]
BLAST of Ca_01847 vs. SwissProt
Match: RZP23_ORYSJ (Serine/arginine-rich splicing factor RSZ23 OS=Oryza sativa subsp. japonica GN=RSZ23 PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 4.832e-24
Identity = 54/128 (42.19%), Postives = 75/128 (58.59%), Query Frame = 1 
Query:    1 MTRVYIGNLETGISRRELEKDFLVFGAIRNVWISRKPPGYAFIDFYNSGNAEDAIRELDGRHGWKVELSFTSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSKLNCFLCGEPGHFAQEC 384
            M RVY+GNL+  ++ RE+E +F VFG +R+VW++RKPPG+AFIDF +  +AEDAIR+LDG++GW+VELS  +                                      S + C+ CGEPGHFA+EC
Sbjct:    1 MARVYVGNLDPRVTAREIEDEFRVFGVLRSVWVARKPPGFAFIDFDDRRDAEDAIRDLDGKNGWRVELSTKA---------------------------GSGRGRDRSGGSDMKCYECGEPGHFAREC 101
[Close]
BLAST of Ca_01847 vs. SwissProt
Match: RZ22A_ARATH (Serine/arginine-rich splicing factor RSZ22A OS=Arabidopsis thaliana GN=RSZ22A PE=1 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.190e-22
Identity = 53/128 (41.41%), Postives = 72/128 (56.25%), Query Frame = 1 
Query:    1 MTRVYIGNLETGISRRELEKDFLVFGAIRNVWISRKPPGYAFIDFYNSGNAEDAIRELDGRHGWKVELSFTSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSKLNCFLCGEPGHFAQEC 384
            M+RVY+GNL+  ++ RELE +F  FG IR+VW++R+PPGYAF+DF +S +A DAIRE+DG++GW+VE S                                         S L C+ CGE GHFA+EC
Sbjct:    1 MSRVYVGNLDPRVTERELEDEFRSFGVIRSVWVARRPPGYAFLDFEDSRDARDAIREVDGKNGWRVEQSHN-----------------RGGGGGRGGGRGGGDGGRGRGGSDLKCYECGESGHFAREC 111
[Close]
BLAST of Ca_01847 vs. SwissProt
Match: RSZ21_ORYSJ (Serine/arginine-rich splicing factor RSZ21 OS=Oryza sativa subsp. japonica GN=RSZP21 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.190e-22
Identity = 52/128 (40.62%), Postives = 74/128 (57.81%), Query Frame = 1 
Query:    1 MTRVYIGNLETGISRRELEKDFLVFGAIRNVWISRKPPGYAFIDFYNSGNAEDAIRELDGRHGWKVELSFTSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSKLNCFLCGEPGHFAQEC 384
            M R+Y+GNL+  ++  ELE +F VFG +R+VW++RKPPG+AFIDF +  +AEDA+R+LDG++GW+VELS  S                                      S++ C+ CGE GHFA+EC
Sbjct:    1 MARLYVGNLDPRVTSGELEDEFRVFGVLRSVWVARKPPGFAFIDFDDKRDAEDALRDLDGKNGWRVELSRNS---------------------------SSRGGRDRHGGSEMKCYECGETGHFAREC 101
[Close]
BLAST of Ca_01847 vs. SwissProt
Match: RZ21A_ORYSJ (Serine/arginine-rich splicing factor RSZ21A OS=Oryza sativa subsp. japonica GN=RSZ21A PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.554e-22
Identity = 52/128 (40.62%), Postives = 74/128 (57.81%), Query Frame = 1 
Query:    1 MTRVYIGNLETGISRRELEKDFLVFGAIRNVWISRKPPGYAFIDFYNSGNAEDAIRELDGRHGWKVELSFTSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSKLNCFLCGEPGHFAQEC 384
            M RVY+GNL+  ++ RELE +F VFG +R+VW++RKPPG+AFIDF +  +A+DAIR++DG++GW+VELS  +                                      S+  C+ CGE GHFA+EC
Sbjct:    1 MARVYVGNLDPRVTARELEDEFRVFGVLRSVWVARKPPGFAFIDFDDRRDAQDAIRDIDGKNGWRVELSRNA--------------------------SSGRGGRDRYGSSESKCYECGETGHFAREC 102
[Close]
BLAST of Ca_01847 vs. SwissProt
Match: RZP22_ARATH (Serine/arginine-rich splicing factor RSZ22 OS=Arabidopsis thaliana GN=RSZ22 PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 7.714e-22
Identity = 51/128 (39.84%), Postives = 70/128 (54.69%), Query Frame = 1 
Query:    1 MTRVYIGNLETGISRRELEKDFLVFGAIRNVWISRKPPGYAFIDFYNSGNAEDAIRELDGRHGWKVELSFTSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSKLNCFLCGEPGHFAQEC 384
            M+RVY+GNL+  ++ RELE +F  FG +R+VW++R+PPGYAF+DF +  +A DAIR LDG++GW+VE S                                         S L C+ CGE GHFA+EC
Sbjct:    1 MSRVYVGNLDPRVTERELEDEFRAFGVVRSVWVARRPPGYAFLDFEDPRDARDAIRALDGKNGWRVEQSHN--------------RGERGGGGRGGDRGGGGGGRGGRGGSDLKCYECGETGHFAREC 114
[Close]
BLAST of Ca_01847 vs. SwissProt
Match: RZP21_ARATH (Serine/arginine-rich splicing factor RSZ21 OS=Arabidopsis thaliana GN=RSZ21 PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.232e-19
Identity = 49/128 (38.28%), Postives = 67/128 (52.34%), Query Frame = 1 
Query:    1 MTRVYIGNLETGISRRELEKDFLVFGAIRNVWISRKPPGYAFIDFYNSGNAEDAIRELDGRHGWKVELSFTSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSKLNCFLCGEPGHFAQEC 384
            MTRVY+GNL+  ++ RELE +F  FG +RNVW++R+PPGYAF++F +  +A DAI  LD ++GW+VELS                                             C+ CGE GHFA+EC
Sbjct:    1 MTRVYVGNLDPRVTERELEDEFKAFGVLRNVWVARRPPGYAFLEFDDERDALDAISALDRKNGWRVELSHKD------------------------KGGRGGGGGRRGGIEDSKCYECGELGHFAREC 104
[Close]
BLAST of Ca_01847 vs. SwissProt
Match: SRSF7_MOUSE (Serine/arginine-rich splicing factor 7 OS=Mus musculus GN=Srsf7 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 5.920e-14
Identity = 42/129 (32.56%), Postives = 63/129 (48.84%), Query Frame = 1 
Query:    4 TRVYIGNLETGISRRELEKDFLVFGAIRNVWISRKPPGYAFIDFYNSGNAEDAIRELDGR--HGWKVELSFTSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSKLNCFLCGEPGHFAQEC 384
            T+VY+GNL TG  + ELE+ F  +G +R VWI+R PPG+AF++F +  +AEDA+R LDG+   G +V +  ++                                          C+ CGE GH+A +C
Sbjct:   40 TKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPRRSRFDRPPARRPFDPND--------------------RCYECGEKGHYAYDC 148
[Close]
BLAST of Ca_01847 vs. SwissProt
Match: SRSF7_HUMAN (Serine/arginine-rich splicing factor 7 OS=Homo sapiens GN=SRSF7 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 5.920e-14
Identity = 42/129 (32.56%), Postives = 63/129 (48.84%), Query Frame = 1 
Query:    4 TRVYIGNLETGISRRELEKDFLVFGAIRNVWISRKPPGYAFIDFYNSGNAEDAIRELDGR--HGWKVELSFTSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSKLNCFLCGEPGHFAQEC 384
            T+VY+GNL TG  + ELE+ F  +G +R VWI+R PPG+AF++F +  +AEDA+R LDG+   G +V +  ++                                          C+ CGE GH+A +C
Sbjct:   11 TKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPRRSRFDRPPARRPFDPND--------------------RCYECGEKGHYAYDC 119
[Close]
BLAST of Ca_01847 vs. SwissProt
Match: SRSF7_BOVIN (Serine/arginine-rich splicing factor 7 OS=Bos taurus GN=SRSF7 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 5.920e-14
Identity = 42/129 (32.56%), Postives = 63/129 (48.84%), Query Frame = 1 
Query:    4 TRVYIGNLETGISRRELEKDFLVFGAIRNVWISRKPPGYAFIDFYNSGNAEDAIRELDGR--HGWKVELSFTSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSKLNCFLCGEPGHFAQEC 384
            T+VY+GNL TG  + ELE+ F  +G +R VWI+R PPG+AF++F +  +AEDA+R LDG+   G +V +  ++                                          C+ CGE GH+A +C
Sbjct:   11 TKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPRRSRFDRPPARRPFDPND--------------------RCYECGEKGHYAYDC 119
[Close]
BLAST of Ca_01847 vs. SwissProt
Match: RBP1_DROME (RNA-binding protein 1 OS=Drosophila melanogaster GN=Rbp1 PE=2 SV=3)

HSP 1 Score: 70.8626 bits (172), Expect = 5.541e-12
Identity = 31/72 (43.06%), Postives = 49/72 (68.06%), Query Frame = 1 
Query:    7 RVYIGNLETGISRRELEKDFLVFGAIRNVWISRKPPGYAFIDFYNSGNAEDAIRELDGRH--GWKVELSFTS 216
            +VY+GNL +  S+ E+E  F  +G +RNVW++R PPG+AF++F +  +AEDA R LDG    G ++ +  +S
Sbjct:   12 KVYVGNLGSSASKHEIEGAFAKYGPLRNVWVARNPPGFAFVEFEDRRDAEDATRALDGTRCCGTRIRVEMSS 83
[Close]
BLAST of Ca_01847 vs. TrEMBL
Match: I1MWE4_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 5.419e-25
Identity = 71/200 (35.50%), Postives = 95/200 (47.50%), Query Frame = 1 
Query:    1 MTRVYIGNLETGISRRELEKDFLVFGAIRNVWISRKPPGYAFIDFYNSGNAEDAIRELDGRHGWKVELSFTSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSKLNCFLCGEPGHFAQECXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDHERDSH---------EGVKHANGNGLKDARRSRS 573
            M+RVY+GNL++ ++ R+LE +F VFG IR+VW++R+PPGYAFIDF +  +A+DAIRELDG++GW+VELS  S                                      S L C+ CGEPGHFA+EC                                          S+         E V +ANGNGL++ RRSRS
Sbjct:    1 MSRVYVGNLDSRVTERDLEDEFRVFGVIRSVWVARRPPGYAFIDFDDRRDAQDAIRELDGKNGWRVELSHNS-------------------------RGGGGGRGGRSGGSDLKCYECGEPGHFARECRMRGGSGRRRSRSPPRFRRSPSYGRSPRGRSPRRRSLSPRGRSYSRSPPYRGREEVPYANGNGLRERRRSRS 175
[Close]
BLAST of Ca_01847 vs. TrEMBL
Match: I1M9U3_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 5.419e-25
Identity = 71/200 (35.50%), Postives = 95/200 (47.50%), Query Frame = 1 
Query:    1 MTRVYIGNLETGISRRELEKDFLVFGAIRNVWISRKPPGYAFIDFYNSGNAEDAIRELDGRHGWKVELSFTSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSKLNCFLCGEPGHFAQECXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDHERDSH---------EGVKHANGNGLKDARRSRS 573
            M+RVY+GNL++ ++ R+LE +F VFG IR+VW++R+PPGYAFIDF +  +A+DAIRELDG++GW+VELS  S                                      S L C+ CGEPGHFA+EC                                          S+         E V +ANGNGL++ RRSRS
Sbjct:    1 MSRVYVGNLDSRVTERDLEDEFRVFGVIRSVWVARRPPGYAFIDFDDRRDAQDAIRELDGKNGWRVELSHNS-------------------------RGGGGGRGGRSGGSDLKCYECGEPGHFARECRMRGGSGRRRSRSPPRFRRSPSYGRSPRGRSPRHRSLSPRGRSYSRSPPYRGREEVPYANGNGLRERRRSRS 175
[Close]
BLAST of Ca_01847 vs. TrEMBL
Match: G7J2T5_MEDTR (Splicing factor arginine/serine-rich OS=Medicago truncatula GN=MTR_3g109020 PE=4 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 9.244e-25
Identity = 62/128 (48.44%), Postives = 76/128 (59.38%), Query Frame = 1 
Query:    1 MTRVYIGNLETGISRRELEKDFLVFGAIRNVWISRKPPGYAFIDFYNSGNAEDAIRELDGRHGWKVELSFTSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSKLNCFLCGEPGHFAQEC 384
            MTRVYIGNL++ IS R+LE DF VFG IR+VW++R+PPGYAFIDF +  +A DAIRELDG++GW+VELS  S                                      S L C+ CGEPGHFA+EC
Sbjct:    1 MTRVYIGNLDSRISERDLEDDFHVFGVIRSVWVARRPPGYAFIDFDDRRDALDAIRELDGKNGWRVELSHNS-------------KTGGGGGGRGGGGGGGGRGRSGGGGSDLKCYECGEPGHFAREC 115
[Close]
BLAST of Ca_01847 vs. TrEMBL
Match: G7I5R1_MEDTR (RNA-binding protein Rsf1 OS=Medicago truncatula GN=MTR_1g009580 PE=4 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 2.690e-24
Identity = 71/206 (34.47%), Postives = 94/206 (45.63%), Query Frame = 1 
Query:    1 MTRVYIGNLETGISRRELEKDFLVFGAIRNVWISRKPPGYAFIDFYNSGNAEDAIRELDGRHGWKVELSFTSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSKLNCFLCGEPGHFAQECXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDHERDSHEG---------------VKHANGNGLKDARRSRS 573
            M+RVY+GNL++ +S R+LE +F VFG IR+VW++R+PPGYAFIDF +  +A+DAIR+LDG++GW+VELS  S                                      S L C+ CGEPGHFA+EC                                          S  G               V +ANGNG++D RRSRS
Sbjct:    1 MSRVYVGNLDSRVSERDLEDEFRVFGVIRSVWVARRPPGYAFIDFDDRRDAQDAIRDLDGKNGWRVELSHNS----------------RSGGGGGGGGGGRGRGGGGGGGSDLKCYECGEPGHFARECRNRGGGGAGRRRSRSPPRFRRSPSYGRRSYSPRGRSPRRRSVSPRGRSYSRSPPPYRGREEVPYANGNGVRDRRRSRS 190
[Close]
BLAST of Ca_01847 vs. TrEMBL
Match: E3P863_9FABA (Putative arginine/serine-rich splicing factor OS=Arachis diogoi GN=RSZ PE=2 SV=2)

HSP 1 Score: 117.087 bits (292), Expect = 2.690e-24
Identity = 58/128 (45.31%), Postives = 77/128 (60.16%), Query Frame = 1 
Query:    1 MTRVYIGNLETGISRRELEKDFLVFGAIRNVWISRKPPGYAFIDFYNSGNAEDAIRELDGRHGWKVELSFTSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSKLNCFLCGEPGHFAQEC 384
            M+RVY+GNL++ ++ R+LE +F VFG IR+VW++R+PPGYAFIDF +S +A DAIRELDG++GW+VELS  S                                      S L C+ CGEPGHFA+EC
Sbjct:    1 MSRVYVGNLDSRVTERDLEDEFRVFGVIRSVWVARRPPGYAFIDFDDSRDARDAIRELDGKNGWRVELSHNS----------------------RGGGGGRGGGRGRSGGSDLKCYECGEPGHFAREC 106
[Close]
BLAST of Ca_01847 vs. TrEMBL
Match: I1M9U2_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 3.513e-24
Identity = 71/203 (34.98%), Postives = 95/203 (46.80%), Query Frame = 1 
Query:    1 MTRVYIGNLETGISRRELEKDFLVFGAIRNVWISRKPPGYAFIDFYNSGNAEDAIRELDGRHGWKVELSFTSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSKLNCFLCGEPGHFAQEC--------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDHERD----SHEGVKHANGNGLKDARRSRS 573
            M+RVY+GNL++ ++ R+LE +F VFG IR+VW++R+PPGYAFIDF +  +A+DAIRELDG++GW+VELS  S                                      S L C+ CGEPGHFA+EC                                              + R       E V +ANGNGL++ RRSRS
Sbjct:    1 MSRVYVGNLDSRVTERDLEDEFRVFGVIRSVWVARRPPGYAFIDFDDRRDAQDAIRELDGKNGWRVELSHNS-------------------------RGGGGGRGGRSGGSDLKCYECGEPGHFARECRMRGGSGRRRSRSPPRFRRSPSYGRRSYSPRGRSPRHRSLSPRGRSYSRSPPYRGREEVPYANGNGLRERRRSRS 178
[Close]
BLAST of Ca_01847 vs. TrEMBL
Match: C6SVE9_SOYBN (Uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 3.513e-24
Identity = 71/203 (34.98%), Postives = 95/203 (46.80%), Query Frame = 1 
Query:    1 MTRVYIGNLETGISRRELEKDFLVFGAIRNVWISRKPPGYAFIDFYNSGNAEDAIRELDGRHGWKVELSFTSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSKLNCFLCGEPGHFAQEC--------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDHERD----SHEGVKHANGNGLKDARRSRS 573
            M+RVY+GNL++ ++ R+LE +F VFG IR+VW++R+PPGYAFIDF +  +A+DAIRELDG++GW+VELS  S                                      S L C+ CGEPGHFA+EC                                              + R       E V +ANGNGL++ RRSRS
Sbjct:    1 MSRVYVGNLDSRVTERDLEDEFRVFGVIRSVWVARRPPGYAFIDFDDRRDAQDAIRELDGKNGWRVELSHNS-------------------------RGGGGGRGGRSGGSDLKCYECGEPGHFARECRMRGGSGRRRSRSPPRFRRSPSYGRRSYSPRGRSPRRRSLSPRGRSYSRSPPYRGREEVPYANGNGLRERRRSRS 178
[Close]
BLAST of Ca_01847 vs. TrEMBL
Match: D7T0J3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0069g00800 PE=4 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 4.588e-24
Identity = 58/128 (45.31%), Postives = 76/128 (59.38%), Query Frame = 1 
Query:    1 MTRVYIGNLETGISRRELEKDFLVFGAIRNVWISRKPPGYAFIDFYNSGNAEDAIRELDGRHGWKVELSFTSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSKLNCFLCGEPGHFAQEC 384
            M+RVY+GNL+  ++ RELE +F VFG IR+VW++R+PPGYAFIDF +  +A+DAIRELDG++GW+VELS  S                                      S L C+ CGEPGHFA+EC
Sbjct:    1 MSRVYVGNLDPRVTERELEDEFRVFGVIRSVWVARRPPGYAFIDFDDRRDAQDAIRELDGKNGWRVELSHNS---------------------RGGGGGGRGGGRGRSGGSDLKCYECGEPGHFAREC 107
[Close]
BLAST of Ca_01847 vs. TrEMBL
Match: I1M9U5_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=2)

HSP 1 Score: 115.931 bits (289), Expect = 5.992e-24
Identity = 57/128 (44.53%), Postives = 77/128 (60.16%), Query Frame = 1 
Query:    1 MTRVYIGNLETGISRRELEKDFLVFGAIRNVWISRKPPGYAFIDFYNSGNAEDAIRELDGRHGWKVELSFTSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSKLNCFLCGEPGHFAQEC 384
            M+RVY+GNL++ ++ R+LE +F VFG IR+VW++R+PPGYAFIDF +  +A+DAIRELDG++GW+VELS  S                                      S L C+ CGEPGHFA+EC
Sbjct:    1 MSRVYVGNLDSRVTERDLEDEFRVFGVIRSVWVARRPPGYAFIDFDDRRDAQDAIRELDGKNGWRVELSHNS-------------------------RGGGGGRGGRSGGSDLKCYECGEPGHFAREC 103
[Close]
BLAST of Ca_01847 vs. TrEMBL
Match: I1M9U4_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 5.992e-24
Identity = 57/128 (44.53%), Postives = 77/128 (60.16%), Query Frame = 1 
Query:    1 MTRVYIGNLETGISRRELEKDFLVFGAIRNVWISRKPPGYAFIDFYNSGNAEDAIRELDGRHGWKVELSFTSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSKLNCFLCGEPGHFAQEC 384
            M+RVY+GNL++ ++ R+LE +F VFG IR+VW++R+PPGYAFIDF +  +A+DAIRELDG++GW+VELS  S                                      S L C+ CGEPGHFA+EC
Sbjct:    1 MSRVYVGNLDSRVTERDLEDEFRVFGVIRSVWVARRPPGYAFIDFDDRRDAQDAIRELDGKNGWRVELSHNS-------------------------RGGGGGRGGRSGGSDLKCYECGEPGHFAREC 103
[Close]
BLAST of Ca_01847 vs. DB:Swiss
Match: RZP23_ORYSJ (Serine/arginine-rich splicing factor RSZ23 OS=Oryza sativa subsp. japonica OX=39947 GN=RSZ23 PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 3.546e-30
Identity = 58/128 (45.31%), Postives = 79/128 (61.72%), Query Frame = 1 
Query:    1 MTRVYIGNLETGISRRELEKDFLVFGAIRNVWISRKPPGYAFIDFYNSGNAEDAIRELDGRHGWKVELSFTSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSKLNCFLCGEPGHFAQEC 384
            M RVY+GNL+  ++ RE+E +F VFG +R+VW++RKPPG+AFIDF +  +AEDAIR+LDG++GW+VELS  +                           G G G     GS + C+ CGEPGHFA+EC
Sbjct:    1 MARVYVGNLDPRVTAREIEDEFRVFGVLRSVWVARKPPGFAFIDFDDRRDAEDAIRDLDGKNGWRVELSTKA---------------------------GSGRGRDRSGGSDMKCYECGEPGHFAREC 101
[Close]
BLAST of Ca_01847 vs. DB:Swiss
Match: RZ21A_ORYSJ (Serine/arginine-rich splicing factor RSZ21A OS=Oryza sativa subsp. japonica OX=39947 GN=RSZ21A PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 6.293e-28
Identity = 55/128 (42.97%), Postives = 77/128 (60.16%), Query Frame = 1 
Query:    1 MTRVYIGNLETGISRRELEKDFLVFGAIRNVWISRKPPGYAFIDFYNSGNAEDAIRELDGRHGWKVELSFTSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSKLNCFLCGEPGHFAQEC 384
            M RVY+GNL+  ++ RELE +F VFG +R+VW++RKPPG+AFIDF +  +A+DAIR++DG++GW+VELS  +                            G GG      S+  C+ CGE GHFA+EC
Sbjct:    1 MARVYVGNLDPRVTARELEDEFRVFGVLRSVWVARKPPGFAFIDFDDRRDAQDAIRDIDGKNGWRVELSRNA--------------------------SSGRGGRDRYGSSESKCYECGETGHFAREC 102
[Close]
BLAST of Ca_01847 vs. DB:Swiss
Match: RZ22A_ARATH (Serine/arginine-rich splicing factor RSZ22A OS=Arabidopsis thaliana OX=3702 GN=RSZ22A PE=1 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 9.468e-28
Identity = 66/128 (51.56%), Postives = 85/128 (66.41%), Query Frame = 1 
Query:    1 MTRVYIGNLETGISRRELEKDFLVFGAIRNVWISRKPPGYAFIDFYNSGNAEDAIRELDGRHGWKVELSFTSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSKLNCFLCGEPGHFAQEC 384
            M+RVY+GNL+  ++ RELE +F  FG IR+VW++R+PPGYAF+DF +S +A DAIRE+DG++GW+VE S                     GGGG G GRGGG G  G  GS L C+ CGE GHFA+EC
Sbjct:    1 MSRVYVGNLDPRVTERELEDEFRSFGVIRSVWVARRPPGYAFLDFEDSRDARDAIREVDGKNGWRVEQSHNR-----------------GGGGGRGGGRGGGDGGRGRGGSDLKCYECGESGHFAREC 111
[Close]
BLAST of Ca_01847 vs. DB:Swiss
Match: RSZ21_ORYSJ (Serine/arginine-rich splicing factor RSZ21 OS=Oryza sativa subsp. japonica OX=39947 GN=RSZP21 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.636e-27
Identity = 55/128 (42.97%), Postives = 77/128 (60.16%), Query Frame = 1 
Query:    1 MTRVYIGNLETGISRRELEKDFLVFGAIRNVWISRKPPGYAFIDFYNSGNAEDAIRELDGRHGWKVELSFTSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSKLNCFLCGEPGHFAQEC 384
            M R+Y+GNL+  ++  ELE +F VFG +R+VW++RKPPG+AFIDF +  +AEDA+R+LDG++GW+VELS  S                              GG     GS++ C+ CGE GHFA+EC
Sbjct:    1 MARLYVGNLDPRVTSGELEDEFRVFGVLRSVWVARKPPGFAFIDFDDKRDAEDALRDLDGKNGWRVELSRNS---------------------------SSRGGRDRHGGSEMKCYECGETGHFAREC 101
[Close]
BLAST of Ca_01847 vs. DB:Swiss
Match: RSZ22_ARATH (Serine/arginine-rich splicing factor RSZ22 OS=Arabidopsis thaliana OX=3702 GN=RSZ22 PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 8.904e-27
Identity = 64/128 (50.00%), Postives = 84/128 (65.62%), Query Frame = 1 
Query:    1 MTRVYIGNLETGISRRELEKDFLVFGAIRNVWISRKPPGYAFIDFYNSGNAEDAIRELDGRHGWKVELSFTSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSKLNCFLCGEPGHFAQEC 384
            M+RVY+GNL+  ++ RELE +F  FG +R+VW++R+PPGYAF+DF +  +A DAIR LDG++GW+VE S                 G   GGG GG+  GGGGG  G  GS L C+ CGE GHFA+EC
Sbjct:    1 MSRVYVGNLDPRVTERELEDEFRAFGVVRSVWVARRPPGYAFLDFEDPRDARDAIRALDGKNGWRVEQSHNR--------------GERGGGGRGGDRGGGGGGRGGRGGSDLKCYECGETGHFAREC 114
[Close]
BLAST of Ca_01847 vs. DB:Swiss
Match: RSZ21_ARATH (Serine/arginine-rich splicing factor RSZ21 OS=Arabidopsis thaliana OX=3702 GN=RSZ21 PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.902e-23
Identity = 57/128 (44.53%), Postives = 75/128 (58.59%), Query Frame = 1 
Query:    1 MTRVYIGNLETGISRRELEKDFLVFGAIRNVWISRKPPGYAFIDFYNSGNAEDAIRELDGRHGWKVELSFTSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSKLNCFLCGEPGHFAQEC 384
            MTRVY+GNL+  ++ RELE +F  FG +RNVW++R+PPGYAF++F +  +A DAI  LD ++GW+VELS    G  GGG GR GG                             C+ CGE GHFA+EC
Sbjct:    1 MTRVYVGNLDPRVTERELEDEFKAFGVLRNVWVARRPPGYAFLEFDDERDALDAISALDRKNGWRVELSHKDKGGRGGGGGRRGGIEDS------------------------KCYECGELGHFAREC 104
[Close]
BLAST of Ca_01847 vs. DB:Swiss
Match: SRSF7_BOVIN (Serine/arginine-rich splicing factor 7 OS=Bos taurus OX=9913 GN=SRSF7 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 5.646e-16
Identity = 44/129 (34.11%), Postives = 65/129 (50.39%), Query Frame = 1 
Query:    4 TRVYIGNLETGISRRELEKDFLVFGAIRNVWISRKPPGYAFIDFYNSGNAEDAIRELDGRH--GWKVELSFTSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSKLNCFLCGEPGHFAQEC 384
            T+VY+GNL TG  + ELE+ F  +G +R VWI+R PPG+AF++F +  +AEDA+R LDG+   G +V +  ++G        R                                C+ CGE GH+A +C
Sbjct:   11 TKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPRRSRFDRPPARRPFDPND--------------------RCYECGEKGHYAYDC 119
[Close]
BLAST of Ca_01847 vs. DB:Swiss
Match: SRSF7_HUMAN (Serine/arginine-rich splicing factor 7 OS=Homo sapiens OX=9606 GN=SRSF7 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 5.735e-16
Identity = 44/129 (34.11%), Postives = 65/129 (50.39%), Query Frame = 1 
Query:    4 TRVYIGNLETGISRRELEKDFLVFGAIRNVWISRKPPGYAFIDFYNSGNAEDAIRELDGRH--GWKVELSFTSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSKLNCFLCGEPGHFAQEC 384
            T+VY+GNL TG  + ELE+ F  +G +R VWI+R PPG+AF++F +  +AEDA+R LDG+   G +V +  ++G        R                                C+ CGE GH+A +C
Sbjct:   11 TKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPRRSRFDRPPARRPFDPND--------------------RCYECGEKGHYAYDC 119
[Close]
BLAST of Ca_01847 vs. DB:Swiss
Match: SRSF7_MOUSE (Serine/arginine-rich splicing factor 7 OS=Mus musculus OX=10090 GN=Srsf7 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.380e-15
Identity = 44/129 (34.11%), Postives = 65/129 (50.39%), Query Frame = 1 
Query:    4 TRVYIGNLETGISRRELEKDFLVFGAIRNVWISRKPPGYAFIDFYNSGNAEDAIRELDGRH--GWKVELSFTSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSKLNCFLCGEPGHFAQEC 384
            T+VY+GNL TG  + ELE+ F  +G +R VWI+R PPG+AF++F +  +AEDA+R LDG+   G +V +  ++G        R                                C+ CGE GH+A +C
Sbjct:   40 TKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPRRSRFDRPPARRPFDPND--------------------RCYECGEKGHYAYDC 148
[Close]
BLAST of Ca_01847 vs. DB:Swiss
Match: RBP1_DROME (RNA-binding protein 1 OS=Drosophila melanogaster OX=7227 GN=Rbp1 PE=2 SV=3)

HSP 1 Score: 70.8626 bits (172), Expect = 1.463e-14
Identity = 29/58 (50.00%), Postives = 43/58 (74.14%), Query Frame = 1 
Query:    7 RVYIGNLETGISRRELEKDFLVFGAIRNVWISRKPPGYAFIDFYNSGNAEDAIRELDG 180
            +VY+GNL +  S+ E+E  F  +G +RNVW++R PPG+AF++F +  +AEDA R LDG
Sbjct:   12 KVYVGNLGSSASKHEIEGAFAKYGPLRNVWVARNPPGFAFVEFEDRRDAEDATRALDG 69
The following BLAST results are available for this feature:
BLAST of Ca_01847 vs. SwissProt
Analysis Date: 2013-10-24 (Homology Analysis: Kabuli C.arietinum mRNA vs Swissprot)
Total hits: 15
Match NameE-valueIdentityDescription
RZP23_ORYSJ4.832e-2442.19Serine/arginine-rich splicing factor RSZ23 OS=Oryz... [more]
RZ22A_ARATH1.190e-2241.41Serine/arginine-rich splicing factor RSZ22A OS=Ara... [more]
RSZ21_ORYSJ1.190e-2240.63Serine/arginine-rich splicing factor RSZ21 OS=Oryz... [more]
RZ21A_ORYSJ1.554e-2240.63Serine/arginine-rich splicing factor RSZ21A OS=Ory... [more]
RZP22_ARATH7.714e-2239.84Serine/arginine-rich splicing factor RSZ22 OS=Arab... [more]
RZP21_ARATH1.232e-1938.28Serine/arginine-rich splicing factor RSZ21 OS=Arab... [more]
SRSF7_MOUSE5.920e-1432.56Serine/arginine-rich splicing factor 7 OS=Mus musc... [more]
SRSF7_HUMAN5.920e-1432.56Serine/arginine-rich splicing factor 7 OS=Homo sap... [more]
SRSF7_BOVIN5.920e-1432.56Serine/arginine-rich splicing factor 7 OS=Bos taur... [more]
RBP1_DROME5.541e-1243.06RNA-binding protein 1 OS=Drosophila melanogaster G... [more]

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BLAST of Ca_01847 vs. TrEMBL
Analysis Date: 2013-10-24 (Homology Analysis: Kabuli C.arietinum mRNA vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
I1MWE4_SOYBN5.419e-2535.50Uncharacterized protein OS=Glycine max PE=4 SV=1[more]
I1M9U3_SOYBN5.419e-2535.50Uncharacterized protein OS=Glycine max PE=4 SV=1[more]
G7J2T5_MEDTR9.244e-2548.44Splicing factor arginine/serine-rich OS=Medicago t... [more]
G7I5R1_MEDTR2.690e-2434.47RNA-binding protein Rsf1 OS=Medicago truncatula GN... [more]
E3P863_9FABA2.690e-2445.31Putative arginine/serine-rich splicing factor OS=A... [more]
I1M9U2_SOYBN3.513e-2434.98Uncharacterized protein OS=Glycine max PE=4 SV=1[more]
C6SVE9_SOYBN3.513e-2434.98Uncharacterized protein OS=Glycine max PE=2 SV=1[more]
D7T0J3_VITVI4.588e-2445.31Putative uncharacterized protein OS=Vitis vinifera... [more]
I1M9U5_SOYBN5.992e-2444.53Uncharacterized protein OS=Glycine max PE=4 SV=2[more]
I1M9U4_SOYBN5.992e-2444.53Uncharacterized protein OS=Glycine max PE=4 SV=1[more]

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BLAST of Ca_01847 vs. DB:Swiss
Analysis Date: 2019-05-21 (BLAST: C. arietinum CDC Frontier (kabuli), Swissprot)
Total hits: 10
Match NameE-valueIdentityDescription
RZP23_ORYSJ3.546e-3045.31Serine/arginine-rich splicing factor RSZ23 OS=Oryz... [more]
RZ21A_ORYSJ6.293e-2842.97Serine/arginine-rich splicing factor RSZ21A OS=Ory... [more]
RZ22A_ARATH9.468e-2851.56Serine/arginine-rich splicing factor RSZ22A OS=Ara... [more]
RSZ21_ORYSJ1.636e-2742.97Serine/arginine-rich splicing factor RSZ21 OS=Oryz... [more]
RSZ22_ARATH8.904e-2750.00Serine/arginine-rich splicing factor RSZ22 OS=Arab... [more]
RSZ21_ARATH1.902e-2344.53Serine/arginine-rich splicing factor RSZ21 OS=Arab... [more]
SRSF7_BOVIN5.646e-1634.11Serine/arginine-rich splicing factor 7 OS=Bos taur... [more]
SRSF7_HUMAN5.735e-1634.11Serine/arginine-rich splicing factor 7 OS=Homo sap... [more]
SRSF7_MOUSE1.380e-1534.11Serine/arginine-rich splicing factor 7 OS=Mus musc... [more]
RBP1_DROME1.463e-1450.00RNA-binding protein 1 OS=Drosophila melanogaster O... [more]
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Expression

Available Analyses

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Download expression dataset for this feature
InterPro
Analysis Name: InterProScan analysis for kabuli C. arietinum unigenes
Date Performed: 2013-10-24
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 4..61
score: 4.1
IPR000504RNA recognition motif domainSMARTSM00360RNA recognition motifcoord: 3..69
score: 6.6
IPR000504RNA recognition motif domainPROFILEPS50102RRMcoord: 2..73
score: 14
IPR001878Zinc finger, CCHC-typeGENE3D4.10.60.10no descriptioncoord: 108..130
score: 9.8
IPR001878Zinc finger, CCHC-typePFAMPF00098zf-CCHCcoord: 114..129
score: 7.1
IPR001878Zinc finger, CCHC-typeSMARTSM00343zinc fingercoord: 114..130
score: 0.0
IPR001878Zinc finger, CCHC-typePROFILEPS50158ZF_CCHCcoord: 115..129
score: 10
IPR012677Nucleotide-binding, alpha-beta plaitGENE3D3.30.70.330no descriptioncoord: 2..86
score: 1.8
NoneNo IPR availablePANTHERPTHR10548SPLICING FACTOR, ARGININE/SERINE-RICHcoord: 1..169
score: 1.1
NoneNo IPR availablePANTHERPTHR10548:SF23ARGININE/SERINE-RICH SPLICING FACTORcoord: 1..169
score: 1.1
NoneNo IPR availableSEGsegsegcoord: 73..110
score: NAcoord: 129..165
score
NoneNo IPR availableSUPERFAMILY54928RNA-binding domain, RBDcoord: 2..103
score: 6.4
NoneNo IPR availableSEGsegsegcoord: 44..81
score
NoneNo IPR availableSEGsegsegcoord: 13..50
score

Sequences
The following sequences are available for this feature:

mRNA sequence

>Ca_01847_v1.0_kabuli ID=Ca_01847_v1.0_kabuli; Name=Ca_01847; organism=Cicer arietinum; type=mRNA; length=576bp
ATGACTCGCGTGTATATTGGAAATCTTGAAACAGGAATTTCCAGGAGGGA
ACTTGAAAAAGATTTCCTTGTTTTTGGAGCTATACGAAACGTGTGGATTT
CAAGGAAGCCTCCTGGTTACGCTTTCATTGACTTTTATAACAGCGGAAAT
GCGGAAGATGCTATTCGTGAATTAGATGGAAGACATGGTTGGAAGGTAGA
GCTTTCTTTCACCTCTGGAGGTAGAGGTGGAGGTGGAGTTGGAAGGGAAG
GTGGAGGTGGAGTTGGAAGGGGGGGTGGAGGTGGAGGGGAAGGCAGAGGT
GGTGGTGGTGGTTGGTTTGGTGGGGAAGGATCTAAGTTGAACTGTTTTCT
GTGTGGTGAACCTGGTCATTTTGCCCAGGAGTGTCCTGGTGGTGATTCTG
GAAGACGTCGGAGCCGCAGTCCACCTCGACGTATTAACAGTCCTCGTCAG
CGGAGCTTGTCACCTCGTCGGCGCAGCTATAGCAAGTCACCTCCTGACCA
TGAGCGTGACTCACATGAGGGTGTAAAACATGCTAACGGAAATGGGTTAA
AGGATGCACGTCGAAGCAGAAGTTGA
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protein sequence of Ca_01847_v1.0_kabuli

>Ca_01847_v1.0_kabuli ID=Ca_01847_v1.0_kabuli; Name=Ca_01847_v1.0_kabuli; organism=Cicer arietinum; type=polypeptide; length=191bp
MTRVYIGNLETGISRRELEKDFLVFGAIRNVWISRKPPGYAFIDFYNSGN
AEDAIRELDGRHGWKVELSFTSGGRGGGGVGREGGGGVGRGGGGGGEGRG
GGGGWFGGEGSKLNCFLCGEPGHFAQECPGGDSGRRRSRSPPRRINSPRQ
RSLSPRRRSYSKSPPDHERDSHEGVKHANGNGLKDARRSRS
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mRNA from alignment at Ca5:34034638..34036306-

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ca_01847_v1.0_kabuli ID=Ca_01847_v1.0_kabuli; Name=Ca_01847; organism=Cicer arietinum; type=mRNA; length=1669bp; location=Sequence derived from: Ca5:34034638..34036306- (Cicer arietinum
ATGACTCGCGTGTATATTGGAAATCTTGAAACAGGAATTTCCAGGAGGGA
ACTTGAAAAAGATTTCCTTGTTTTTGGAGCTATACGAAAGTAAACGAATC
TTTTTTGGACATGAATTTAGCATTTTTTGAATCATATTTCTCAATCTTTT
TAAATTTCCTTAGTAGATGGTTGATAATTATGAGTTTGATTTTCTTGAAT
CTTTCCGTTATCTGTGTAGCGTGTGGATTTCAAGGAAGCCTCCTGGTTAC
GCTTTCATTGACTTTTATAACAGCGGAAATGCGGAAGATGCTATTCGTGA
ATTAGATGGTATTTGTAGAAGCATTTTTTACTTTTATTACAATGACATTG
CTATGACTCCACTTGCTTGCTCTTTCTTCACTGACATTAAAGAACAAGCA
AATATTCAATAAAAAAATAAAAACCTGCTGGATTTATTGTTATACCAATC
TTTAAACCACTGCTCTATTGTCCATATTGCTTGACATTCTTTCCATTATT
ATGATTCACTTAAGAAAACATTTCATGATATATACGTTTTTGGATTTATA
ATATTTAGTATTAAAAATCATTATATTATTTTTATATGCATCATATGATA
TAAAACTTAAAAACATATAAATATAAATATTAAACCAGTCCTGTCTTAAA
CCCATTGGCTTATACTACTGTTAATATATTTTGTGAGTTTTACTTTATCA
CAAATCTCAGATATTTTTTAGCATGAAACTTATCGAAATCTATGTATACC
GGTTCAACAGCCATTATGTTTTAGACAAATTTCATCAGTGTGCTTTATGT
TTTGCTAGGAGTGTTTTTTTGTTTCAATTCTAAAATATGGATTAGTATTT
GCTTCCGCTCTATTCAATAGGAAGGCACTTGGTTTGCTTAATTTTTCCTA
CTATTTACCTTGATTTCTCAATTTTTGTCCATGGAGCAGGAAGACATGGT
TGGAAGGTAGAGCTTTCTTTCACCTCTGGAGGTAGAGGTGGAGGTGGAGT
TGGAAGGGAAGGTGGAGGTGGAGTTGGAAGGGGGGGTGGAGGTGGAGGGG
AAGGCAGAGGTGGTGGTGGTGGTTGGTTTGGTGGGGAAGGATCTAAGTTG
AACTGTTTTCTGTGTGGTGAACCTGGTCATTTTGCCCAGGAGTGTCCTGG
TGGTGATTCTGGAAGACGTCGGAGCCGCAGTCCACCTCGACGTATTAACA
GTCCTCGTCAGCGGAGCTTGTCACCTCGTCGGCGCAGCTATAGCAAGTCA
CCTCCTGACCATGAGCGTGACTCACATGAGGGTGTAAAACATGCTAACGG
GTTAGGTTCCATCTCTCTGCCTTGATTTATCTTGGTATCACTTGATGGTT
GCCTGTTTTAAACTTGCCTTTTCTTTCATATAAATATTTTTTTAAATGTT
ATATTTAATGATTTTAGTTTCTAAACTTGTTTCATAGGGGTGCTTTTGTG
TTGAAGTGTTCTTAAGTTATACAGAGAGTTTCATGCTCAAGCATTTTTTC
CTCCTCTTCTTTTGTACCATTTTACAAAAATCTTGTGTCTGCTCTTAATA
TTTTGCTTGTTTCATTTTTTGGTGTGCAGTAAGTATTGTTACATGCATTT
GTGCTGACATATGAAATGTCAATATTGTGCAGAAATGGGTTAAAGGATGC
ACGTCGAAGCAGAAGTTGA
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Coding sequence (CDS) from alignment at Ca5:34034638..34036306-

>Ca_01847_v1.0_kabuli ID=Ca_01847_v1.0_kabuli; Name=Ca_01847; organism=Cicer arietinum; type=CDS; length=576bp; location=Sequence derived from: Ca5:34034638..34036306- (Cicer arietinum
ATGACTCGCGTGTATATTGGAAATCTTGAAACAGGAATTTCCAGGAGGGA
ACTTGAAAAAGATTTCCTTGTTTTTGGAGCTATACGAAACGTGTGGATTT
CAAGGAAGCCTCCTGGTTACGCTTTCATTGACTTTTATAACAGCGGAAAT
GCGGAAGATGCTATTCGTGAATTAGATGGAAGACATGGTTGGAAGGTAGA
GCTTTCTTTCACCTCTGGAGGTAGAGGTGGAGGTGGAGTTGGAAGGGAAG
GTGGAGGTGGAGTTGGAAGGGGGGGTGGAGGTGGAGGGGAAGGCAGAGGT
GGTGGTGGTGGTTGGTTTGGTGGGGAAGGATCTAAGTTGAACTGTTTTCT
GTGTGGTGAACCTGGTCATTTTGCCCAGGAGTGTCCTGGTGGTGATTCTG
GAAGACGTCGGAGCCGCAGTCCACCTCGACGTATTAACAGTCCTCGTCAG
CGGAGCTTGTCACCTCGTCGGCGCAGCTATAGCAAGTCACCTCCTGACCA
TGAGCGTGACTCACATGAGGGTGTAAAACATGCTAACGGAAATGGGTTAA
AGGATGCACGTCGAAGCAGAAGTTGA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR001878Znf_CCHC
IPR012677Nucleotide-bd_a/b_plait_sf
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0008270zinc ion binding
GO:0000166nucleotide binding