Ca_04876, Ca_04876_v1.0_kabuli (mRNA) Cicer arietinum

Transcript Overview
NameCa_04876
Unique NameCa_04876_v1.0_kabuli
TypemRNA
OrganismCicer arietinum (chickpea)
Sequence length588
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Ca5chromosomeCa5:31723455..31727064 -Cicer arietinum CDC Frontier genome v1.0n/a
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
capsR368Pisum sativum Cameor genome v1aPisum sativum
capsR381Pisum sativum Cameor genome v1aPisum sativum
capsR384Pisum sativum Cameor genome v1aPisum sativum
capsR428Pisum sativum Cameor genome v1aPisum sativum
cavuR407Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
cavuR444Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
capvR423Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
capvR513Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
caccR0704Cajanus cajan Asha genome v1.0Cajanus cajan
caccR0709Cajanus cajan Asha genome v1.0Cajanus cajan
cazwsR353Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
cazwsR385Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
catifR365Vicia faba cv. Tiffany genome v1.0Vicia faba
catifR401Vicia faba cv. Tiffany genome v1.0Vicia faba
cavfhR370Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
catifR421Vicia faba cv. Tiffany genome v1.0Vicia faba
cavfhR403Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
cavfhR424Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
cavfhR433Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
cavrvR419Vigna radiata cv. VC1973A genome v6.0Vigna radiata
cavrvR432Vigna radiata cv. VC1973A genome v6.0Vigna radiata
cavssR408Vicia sativa cv. Studenica genome v1.0Vicia sativa
cavssR438Vicia sativa cv. Studenica genome v1.0Vicia sativa
cavssR452Vicia sativa cv. Studenica genome v1.0Vicia sativa
cavssR496Vicia sativa cv. Studenica genome v1.0Vicia sativa
cavuaR399Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
cavuaR413Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
cacanR186Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
cacanR189Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
cacarR377Cicer arietinum
cacarR393Cicer arietinum
cacarR427Cicer arietinum

Orthologs
Gene/TranscriptAssemblySpecies
Vigun09g255100.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
rna-XM_014644521.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
Vfaba.Hedin2.R1.2g207520.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
evm.model.Chr09.1227Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
Phvul.009G018200.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
jg55974.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
rna-XM_012715986.2Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Ca_04876-CDS1Ca_04876-CDS1Cicer arietinumCDS
Ca_04876-CDS2Ca_04876-CDS2Cicer arietinumCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Ca_04876_v1.0_kabuliCa_04876_v1.0_kabuliCicer arietinumpolypeptide


Homology
[Close]
BLAST of Ca_04876 vs. SwissProt
Match: PP224_ARATH (Pentatricopeptide repeat-containing protein At3g12770 OS=Arabidopsis thaliana GN=PCMP-H43 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 5.417e-26
Identity = 59/127 (46.46%), Postives = 86/127 (67.72%), Query Frame = 1 
Query:  199 NKASDFIKLDPGPEHYSCLVDLLCRVGELNKAWELLNEMLYNKGIGNCSVSMWGALLNACVDSGNIELGKLAAQRALELDPQNAGICVMLSNLYARFGMWDEIGRLRVLIKERGLRKDVVGCSWVQV 579
            N+ +D  K++P  +HY+C++DLL R G L++A+E++  M    G     V++WGALL+AC    ++ELG+ AAQ+   +DP N G  V LSNLYA   +WD +  +RV +KE+GL KD VGCSWV+V
Sbjct:  448 NRMADH-KINPQQQHYACVIDLLGRAGHLDQAYEVIKCMPVQPG-----VTVWGALLSACKKHRHVELGEYAAQQLFSIDPSNTGHYVQLSNLYAAARLWDRVAEVRVRMKEKGLNKD-VGCSWVEV 567
[Close]
BLAST of Ca_04876 vs. SwissProt
Match: PP229_ARATH (Pentatricopeptide repeat-containing protein At3g14330 OS=Arabidopsis thaliana GN=PCMP-H57 PE=2 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 8.649e-24
Identity = 51/120 (42.50%), Postives = 82/120 (68.33%), Query Frame = 1 
Query:  220 KLDPGPEHYSCLVDLLCRVGELNKAWELLNEMLYNKGIGNCSVSMWGALLNACVDSGNIELGKLAAQRALELDPQNAGICVMLSNLYARFGMWDEIGRLRVLIKERGLRKDVVGCSWVQV 579
            ++ P  EHY+CLVD+L R G++ +A +++  M +       S S+WG+LLN+C   GN+ +G++AA+    L+P N G  VM+SN+YA   MWD + ++R ++K+RG++K+  GCSWVQV
Sbjct:  469 RVSPALEHYACLVDILGRAGKIKEAVKVIETMPFKP-----SASIWGSLLNSCRLHGNVSVGEIAAKELFVLEPHNPGNYVMVSNIYADAKMWDNVDKIREMMKQRGVKKE-AGCSWVQV 582
[Close]
BLAST of Ca_04876 vs. SwissProt
Match: PPR53_ARATH (Pentatricopeptide repeat-containing protein At1g20230 OS=Arabidopsis thaliana GN=PCMP-H21 PE=2 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 9.562e-23
Identity = 52/119 (43.70%), Postives = 81/119 (68.07%), Query Frame = 1 
Query:  223 LDPGPEHYSCLVDLLCRVGELNKAWELLNEMLYNKGIGNCSVSMWGALLNACVDSGNIELGKLAAQRALELDPQNAGICVMLSNLYARFGMWDEIGRLRVLIKERGLRKDVVGCSWVQV 579
            + P  EHYSC+V+LL R G+L +A++L+ EM +     +C   +WGALLN+C    N++L ++AA++   L+P+N G  V+LSN+YA  GMW E+  +R  ++  GL+K+  GCSW+QV
Sbjct:  521 IKPRLEHYSCMVNLLGRAGKLQEAYDLIKEMPFEPD--SC---VWGALLNSCRLQNNVDLAEIAAEKLFHLEPENPGTYVLLSNIYAAKGMWTEVDSIRNKMESLGLKKN-PGCSWIQV 633
[Close]
BLAST of Ca_04876 vs. SwissProt
Match: PP272_ARATH (Pentatricopeptide repeat-containing protein At3g49170, chloroplastic OS=Arabidopsis thaliana GN=EMB2261 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.631e-22
Identity = 60/149 (40.27%), Postives = 81/149 (54.36%), Query Frame = 1 
Query:  133 TYFTIRTRQLHYDVPAYTDLMLNKASDFIKLDPGPEHYSCLVDLLCRVGELNKAWELLNEMLYNKGIGNCSVSMWGALLNACVDSGNIELGKLAAQRALELDPQNAGICVMLSNLYARFGMWDEIGRLRVLIKERGLRKDVVGCSWVQV 579
            TY  I +   H  + +      N   +  K+ P  EHY+C+VDLLCR G L  A+E +N M +        V +W   L AC    N ELGKLAA++ LELDP      + LSN+YA  G W+E   +R  +KER L K+  GCSW++V
Sbjct:  577 TYVAILSACSHVGLVSEGWRHFNSMYEDHKIKPKMEHYACMVDLLCRAGLLTDAFEFINTMPFQ-----ADVLVWRTFLGACRVHSNTELGKLAARKILELDPNEPAAYIQLSNIYACAGKWEESTEMRRKMKERNLVKE-GGCSWIEV 719
[Close]
BLAST of Ca_04876 vs. SwissProt
Match: PPR45_ARATH (Pentatricopeptide repeat-containing protein At1g15510, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H73 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.076e-21
Identity = 54/130 (41.54%), Postives = 80/130 (61.54%), Query Frame = 1 
Query:  190 LMLNKASDFIKLDPGPEHYSCLVDLLCRVGELNKAWELLNEMLYNKGIGNCSVSMWGALLNACVDSGNIELGKLAAQRALELDPQNAGICVMLSNLYARFGMWDEIGRLRVLIKERGLRKDVVGCSWVQV 579
            +  +K  D+  + P  +HY+C+VDLL R GEL +A + + +M           ++WGALLNAC     I+LG+L+AQ   ELD ++ G  ++L NLYA  G W E+ ++R ++KE GL  D  GCSWV+V
Sbjct:  619 MYFSKMEDY-GVTPNLKHYACVVDLLGRAGELQEAHKFIQKMPVTP-----DPAVWGALLNACRIHHKIDLGELSAQHIFELDKKSVGYYILLCNLYADCGKWREVAKVRRMMKENGLTVD-AGCSWVEV 741
[Close]
BLAST of Ca_04876 vs. SwissProt
Match: PP390_ARATH (Pentatricopeptide repeat-containing protein At5g16860 OS=Arabidopsis thaliana GN=PCMP-H92 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.527e-20
Identity = 52/126 (41.27%), Postives = 73/126 (57.94%), Query Frame = 1 
Query:  199 NKASDFIKLDPGPEHYSCLVDLLCRVGELNKAWELLNEMLYNKGIGNCSVSMWGALLNACVDSGNIELGKLAAQRALELDPQNAGICVMLSNLYARFGMWDEIGRLRVLIKERGLRKDVVGCSWVQ 576
            N+      + PGPEHY+CLVDLL R G LN A  L+ EM            +W A L+ C   G +ELG+ AA++  EL   + G   +LSNLYA  G W ++ R+R L++ +G++K   GCSWV+
Sbjct:  603 NRMKTVFGVSPGPEHYACLVDLLGRAGRLNAALRLIEEMPMEP-----PPVVWVAFLSCCRIHGKVELGEYAAEKITELASNHDGSYTLLSNLYANAGRWKDVTRIRSLMRHKGVKKR-PGCSWVE 722
[Close]
BLAST of Ca_04876 vs. SwissProt
Match: PP320_ARATH (Pentatricopeptide repeat-containing protein At4g18750, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H45 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.994e-20
Identity = 46/120 (38.33%), Postives = 76/120 (63.33%), Query Frame = 1 
Query:  220 KLDPGPEHYSCLVDLLCRVGELNKAWELLNEMLYNKGIGNCSVSMWGALLNACVDSGNIELGKLAAQRALELDPQNAGICVMLSNLYARFGMWDEIGRLRVLIKERGLRKDVVGCSWVQV 579
            K++P  EHY+C+VD+L R G+L KA+  +  M           ++WGALL  C    +++L +  A++  EL+P+N G  V+++N+YA    W+++ RLR  I +RGLRK+  GCSW+++
Sbjct:  631 KIEPTVEHYACIVDMLARTGDLIKAYRFIENMPIPP-----DATIWGALLCGCRIHHDVKLAEKVAEKVFELEPENTGYYVLMANIYAEAEKWEQVKRLRKRIGQRGLRKN-PGCSWIEI 744
[Close]
BLAST of Ca_04876 vs. SwissProt
Match: PP403_ARATH (Putative pentatricopeptide repeat-containing protein At5g37570 OS=Arabidopsis thaliana GN=PCMP-E37 PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 3.401e-20
Identity = 63/190 (33.16%), Postives = 99/190 (52.11%), Query Frame = 1 
Query:    4 SDQVEMFKEYIGKLKGIVGEEKTNYILANTLYLVVAGSNDLANTYFTIRTRQLHYDVPAYTDLMLNKASDFIKLDPGPEHYSCLVDLLCRVGELNKAWELLNEMLYNKGIGNCSVSMWGALLNACVDSGNIELGKLAAQRALELDPQNAGICVMLSNLYARFGMWDEIGRLRVLIKERGLRKDVVGCSWV 573
            S+ + +F++ + +  GIV +E     +A T+ L V G + L                  Y +LM  K S    +   P+HYSC+V+LL R G+L +A+EL+  M +         S WG+LL  C   GN E+ ++ A+   EL+PQ+AG  V+LSN+YA    W ++  LR  + E G+ K + G SW+
Sbjct:  388 SEAIRLFEKMVDE--GIVPDE-----VAFTVILKVCGQSRLVEEGLR------------YFELMRKKYS----ILASPDHYSCIVNLLSRTGKLKEAYELIKSMPFE-----AHASAWGSLLGGCSLHGNTEIAEVVARHLFELEPQSAGSYVLLSNIYAALDRWTDVAHLRDKMNENGITK-ICGRSWI 548
[Close]
BLAST of Ca_04876 vs. SwissProt
Match: PP436_ARATH (Pentatricopeptide repeat-containing protein At5g59600 OS=Arabidopsis thaliana GN=PCMP-E1 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 4.442e-20
Identity = 51/129 (39.53%), Postives = 84/129 (65.12%), Query Frame = 1 
Query:  190 LMLNKASDFIKLDPGPEHYSCLVDLLCRVGELNKAWELLNEMLYNKGIGNCSVSMWGALLNACVDSGNIELGKLAAQRALELDPQNAGICVMLSNLYARFGMWDEIGRLRVLIKERGLRKDVVGCSWVQ 576
            LM NK     ++ P  EHY+C+VDLL R G+L +A+E++  M     +      +WGALL AC + GN+EL ++AA+   EL+P+N+G  ++L++LYA  G W+ + R++ +IK++  R+  +G SWV+
Sbjct:  414 LMQNK----YRIVPRLEHYACMVDLLGRAGKLVEAYEMIKAMRMEPDL-----FVWGALLAACRNHGNMELARIAAKHLAELEPENSGNGLLLTSLYANAGSWESVVRMKKMIKKKRFRR-FLGSSWVE 532
[Close]
BLAST of Ca_04876 vs. SwissProt
Match: PP301_ARATH (Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana GN=PCMP-H24 PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 4.442e-20
Identity = 47/117 (40.17%), Postives = 74/117 (63.25%), Query Frame = 1 
Query:  229 PGPEHYSCLVDLLCRVGELNKAWELLNEMLYNKGIGNCSVSMWGALLNACVDSGNIELGKLAAQRALELDPQNAGICVMLSNLYARFGMWDEIGRLRVLIKERGLRKDVVGCSWVQV 579
            P  +HY+C+VDLL R G L  A  L+  M +         ++WG LL A    GN EL + AA +   ++P+N+G+ V+LSNLYA  G W ++G+LRV ++++G++K V G SW+++
Sbjct:  544 PNSQHYACMVDLLGRAGLLEDAHNLMKNMPFEP-----DAAIWGTLLGASRVHGNTELAETAADKIFAMEPENSGMYVLLSNLYASSGRWGDVGKLRVRMRDKGVKK-VPGYSWIEI 654
[Close]
BLAST of Ca_04876 vs. TrEMBL
Match: G7J7U2_MEDTR (Pentatricopeptide repeat-containing protein OS=Medicago truncatula GN=MTR_3g117620 PE=4 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 3.301e-57
Identity = 110/123 (89.43%), Postives = 116/123 (94.31%), Query Frame = 1 
Query:  208 SDFIKLDPGPEHYSCLVDLLCRVGELNKAWELLNEMLYNKGIGNCSVSMWGALLNACVDSGNIELGKLAAQRALELDPQNAGICVMLSNLYARFGMWDEIGRLRVLIKERGLRKDVVGCSWVQ 576
            +DF KLDPGPEHYSCLVDLLCR GELNKAWELLNE  ++KGIGNCSVSMWGALL+ACVDSGNIELGKLAAQRALELDPQNAGICVMLSN+YAR GMWDEIGRLRVLI +RGLRKD VGCSWVQ
Sbjct:  536 NDF-KLDPGPEHYSCLVDLLCRAGELNKAWELLNETCHHKGIGNCSVSMWGALLSACVDSGNIELGKLAAQRALELDPQNAGICVMLSNVYARLGMWDEIGRLRVLINQRGLRKD-VGCSWVQ 656
[Close]
BLAST of Ca_04876 vs. TrEMBL
Match: K7KHG1_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 1.174e-54
Identity = 110/145 (75.86%), Postives = 123/145 (84.83%), Query Frame = 1 
Query:  151 TRQLHYDVPAYTDLMLNKASDFIKLDPGPEHYSCLVDLLCRVGELNKAWELLNEMLYNKGIGNCSVSMWGALLNACVDSGNIELGKLAAQRALELDPQNAGICVMLSNLYARFGMWDEIGRLRVLIKERGLRKDVVGCSWVQVTS 585
            T Q+H  V  +  +    A+DF KLDPGPEHYSCLVDLLCR GEL +AWELLNE LY KG+GNCSVSMWGALL+ACVD G+++LGKLAAQRALELDPQN GIC+MLSNLYARFGMW+EIG LRVLIK RGL+KD VGCSWVQV S
Sbjct:  333 TGQVHAGVKYFESM----ANDF-KLDPGPEHYSCLVDLLCRAGELQRAWELLNETLY-KGMGNCSVSMWGALLSACVDRGDLDLGKLAAQRALELDPQNVGICIMLSNLYARFGMWEEIGHLRVLIKARGLKKD-VGCSWVQVGS 470
[Close]
BLAST of Ca_04876 vs. TrEMBL
Match: K7KSC8_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 211.075 bits (536), Expect = 1.435e-52
Identity = 108/144 (75.00%), Postives = 122/144 (84.72%), Query Frame = 1 
Query:  151 TRQLHYDVPAYTDLMLNKASDFIKLDPGPEHYSCLVDLLCRVGELNKAWELLNEMLYNKGIGNCSVSMWGALLNACVDSGNIELGKLAAQRALELDPQNAGICVMLSNLYARFGMWDEIGRLRVLIKERGLRKDVVGCSWVQVT 582
            T Q+H  +  Y + M N   DF+ LDPGPEHYSCLVDLLCR GEL KAWELLNE LY KG+GNC+VSMWGALL+ACVD G+++LGKLAA+RALELDPQN GI +MLSNLYARFGMW+EIG LRVLIK RGLRKD VGCSWVQV+
Sbjct:  293 TGQVHAGIK-YFECMAN---DFM-LDPGPEHYSCLVDLLCRAGELQKAWELLNETLY-KGMGNCTVSMWGALLSACVDRGDLDLGKLAAERALELDPQNVGILIMLSNLYARFGMWEEIGHLRVLIKARGLRKD-VGCSWVQVS 429
[Close]
BLAST of Ca_04876 vs. TrEMBL
Match: D7U5E6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_03s0038g01070 PE=4 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 8.727e-42
Identity = 84/126 (66.67%), Postives = 105/126 (83.33%), Query Frame = 1 
Query:  208 SDFIKLDPGPEHYSCLVDLLCRVGELNKAWELLNEMLYNKGIGNCSVSMWGALLNACVDSGNIELGKLAAQRALELDPQNAGICVMLSNLYARFGMWDEIGRLRVLIKERGLRKDVVGCSWVQVTS 585
            SDF  L+PGPEHYSC+VDLLCR GEL KAW+++NEM   +  G+ S+SMWGALLNAC + GN+ELGKLAA +ALE+DP N GI V+LSN+YA+F MWDEIG+LR L+KE GL+KD VG SW+++TS
Sbjct:  249 SDF-GLEPGPEHYSCVVDLLCRAGELEKAWKMVNEMTLKEN-GSYSISMWGALLNACNEFGNVELGKLAAHKALEMDPHNVGIYVLLSNMYAKFSMWDEIGQLRELMKESGLKKD-VGRSWIEITS 371
[Close]
BLAST of Ca_04876 vs. TrEMBL
Match: B9RG65_RICCO (Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_1451760 PE=4 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 5.657e-41
Identity = 82/121 (67.77%), Postives = 101/121 (83.47%), Query Frame = 1 
Query:  223 LDPGPEHYSCLVDLLCRVGELNKAWELLNEMLYNKGIGNCSVSMWGALLNACVDSGNIELGKLAAQRALELDPQNAGICVMLSNLYARFGMWDEIGRLRVLIKERGLRKDVVGCSWVQVTS 585
            L P PEHYSC+VDL CR GEL++AW+L+NEML  KG    S+SMWGA+L+AC + GNIE GKLAA+ AL+L+PQN GI VMLSNLYARFGMWDEI  LR ++K+RGL+KD VGCSW+++TS
Sbjct:  231 LTPSPEHYSCVVDLFCRAGELDRAWKLVNEML-TKGHEIHSISMWGAVLSACEEHGNIEFGKLAAREALKLEPQNVGIYVMLSNLYARFGMWDEIDHLRKIMKDRGLKKD-VGCSWIEITS 349
[Close]
BLAST of Ca_04876 vs. TrEMBL
Match: F6HDV1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0020g04320 PE=4 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 1.221e-35
Identity = 75/115 (65.22%), Postives = 94/115 (81.74%), Query Frame = 1 
Query:  208 SDFIKLDPGPEHYSCLVDLLCRVGELNKAWELLNEMLYNKGIGNCSVSMWGALLNACVDSGNIELGKLAAQRALELDPQNAGICVMLSNLYARFGMWDEIGRLRVLIKERGLRKD 552
            SDF  L+P PE+Y C+VDLLCR GEL KAW+++NEM  +K  G+ S+SMWGALLNAC + GN+ELGKLAA +ALE+DP N GI V+LSN+YA+F MWDEI +LR L+KE GL+KD
Sbjct:  184 SDF-GLEPRPEYYRCVVDLLCRAGELEKAWKMVNEMT-SKENGSYSISMWGALLNACNEFGNVELGKLAAHKALEMDPHNVGIYVLLSNMYAKFSMWDEIEQLRELMKESGLKKD 296
[Close]
BLAST of Ca_04876 vs. TrEMBL
Match: M1CJD1_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400026708 PE=4 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 1.763e-34
Identity = 71/120 (59.17%), Postives = 96/120 (80.00%), Query Frame = 1 
Query:  223 LDPGPEHYSCLVDLLCRVGELNKAWELLNEMLYNKGIGNCSVSMWGALLNACVDSGNIELGKLAAQRALELDPQNAGICVMLSNLYARFGMWDEIGRLRVLIKERGLRKDVVGCSWVQVT 582
            L+P PEHYSC++DLLCR GEL++AW L+N++ Y +   N +V++WGALL+AC +  N+ELGK AAQRAL+LDPQN G+ V+LSN+YAR G+W+EI  LR  IKE+GL+KD +G S V +T
Sbjct:  252 LEPSPEHYSCVIDLLCRAGELDRAWNLINDLSYKEN-DNFTVTLWGALLSACHNFDNVELGKFAAQRALDLDPQNDGVYVLLSNMYARNGLWNEIEMLREQIKEKGLKKD-IGHSLVDIT 369
[Close]
BLAST of Ca_04876 vs. TrEMBL
Match: M0RYA1_MUSAM (Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 3.324e-33
Identity = 72/118 (61.02%), Postives = 87/118 (73.73%), Query Frame = 1 
Query:  223 LDPGPEHYSCLVDLLCRVGELNKAWELLNEMLYNK---GIGNCSVSMWGALLNACVDSGNIELGKLAAQRALELDPQNAGICVMLSNLYARFGMWDEIGRLRVLIKERGLRKDVVGCS 567
            L PGPEHY C+VD+LCRVG L  AW+  NEM+      G  N  VS+WGALL+AC DSGN+E+G  AA+RALELDP N+G+ V  SNL AR G+W+EIG LR L+K +GLRKD  GCS
Sbjct:  332 LVPGPEHYGCVVDMLCRVGNLKMAWKFTNEMILETEGDGDSNMGVSVWGALLSACRDSGNVEIGNFAAKRALELDPNNSGVYVEWSNLCARVGLWNEIGELRQLMKVKGLRKD-TGCS 448
[Close]
BLAST of Ca_04876 vs. TrEMBL
Match: R7WDM1_AEGTA (Uncharacterized protein OS=Aegilops tauschii GN=F775_02443 PE=4 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 3.440e-30
Identity = 66/121 (54.55%), Postives = 89/121 (73.55%), Query Frame = 1 
Query:  223 LDPGPEHYSCLVDLLCRVGELNKAWELLNEMLYNKGIGNCSVSMWGALLNACVDSGNIELGKLAAQRALELDPQNAGICVMLSNLYARFGMWDEIGRLRVLIKERGLRKDVVGCSWVQVTS 585
            L P PEHY C+V++LCR GE+ +AWE+       +  GN  VS WGALL+AC D  N+ELG+LAA++A+EL+P+NAGI V LSNLYA  G+W+EI +LR ++K+RG  KD VG +WV+  S
Sbjct:  138 LVPTPEHYGCVVNMLCRAGEVARAWEIATR---EECGGNIGVSTWGALLSACCDCRNVELGRLAARKAIELEPRNAGIYVELSNLYASAGLWEEINKLREVMKDRGFEKD-VGSTWVEQNS 254
[Close]
BLAST of Ca_04876 vs. TrEMBL
Match: K7UQ71_MAIZE (Uncharacterized protein OS=Zea mays GN=ZEAMMB73_109805 PE=4 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 3.440e-30
Identity = 67/121 (55.37%), Postives = 90/121 (74.38%), Query Frame = 1 
Query:  223 LDPGPEHYSCLVDLLCRVGELNKAWELLNEMLYNKGIGNCSVSMWGALLNACVDSGNIELGKLAAQRALELDPQNAGICVMLSNLYARFGMWDEIGRLRVLIKERGLRKDVVGCSWVQVTS 585
            L P PEHY C+V++LCR GE+ KAWE+  +   +  IG   VS WGALL+AC    N+E+G++AAQ+A+ELDP N GI + LSNLYAR  +WD+I +LR ++KERGL KD VGC+WV++ S
Sbjct:  306 LVPTPEHYGCVVNMLCRAGEVTKAWEIATKDGCDHAIG---VSTWGALLSACQVRLNVEVGRMAAQKAIELDPTNVGIYIELSNLYARACLWDDIDQLREVMKERGLEKD-VGCTWVELGS 422
[Close]
BLAST of Ca_04876 vs. DB:Swiss
Match: PP224_ARATH (Pentatricopeptide repeat-containing protein At3g12770 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H43 PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 2.698e-30
Identity = 59/129 (45.74%), Postives = 86/129 (66.67%), Query Frame = 1 
Query:  193 MLNKASDFIKLDPGPEHYSCLVDLLCRVGELNKAWELLNEMLYNKGIGNCSVSMWGALLNACVDSGNIELGKLAAQRALELDPQNAGICVMLSNLYARFGMWDEIGRLRVLIKERGLRKDVVGCSWVQV 579
              N+ +D  K++P  +HY+C++DLL R G L++A+E++  M    G     V++WGALL+AC    ++ELG+ AAQ+   +DP N G  V LSNLYA   +WD +  +RV +KE+GL KD VGCSWV+V
Sbjct:  446 FFNRMADH-KINPQQQHYACVIDLLGRAGHLDQAYEVIKCMPVQPG-----VTVWGALLSACKKHRHVELGEYAAQQLFSIDPSNTGHYVQLSNLYAAARLWDRVAEVRVRMKEKGLNKD-VGCSWVEV 567
[Close]
BLAST of Ca_04876 vs. DB:Swiss
Match: PP229_ARATH (Pentatricopeptide repeat-containing protein At3g14330 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H57 PE=2 SV=2)

HSP 1 Score: 112.464 bits (280), Expect = 1.100e-27
Identity = 51/121 (42.15%), Postives = 82/121 (67.77%), Query Frame = 1 
Query:  217 IKLDPGPEHYSCLVDLLCRVGELNKAWELLNEMLYNKGIGNCSVSMWGALLNACVDSGNIELGKLAAQRALELDPQNAGICVMLSNLYARFGMWDEIGRLRVLIKERGLRKDVVGCSWVQV 579
             ++ P  EHY+CLVD+L R G++ +A +++  M +       S S+WG+LLN+C   GN+ +G++AA+    L+P N G  VM+SN+YA   MWD + ++R ++K+RG++K+  GCSWVQV
Sbjct:  468 FRVSPALEHYACLVDILGRAGKIKEAVKVIETMPFKP-----SASIWGSLLNSCRLHGNVSVGEIAAKELFVLEPHNPGNYVMVSNIYADAKMWDNVDKIREMMKQRGVKKE-AGCSWVQV 582
[Close]
BLAST of Ca_04876 vs. DB:Swiss
Match: PPR53_ARATH (Pentatricopeptide repeat-containing protein At1g20230 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H21 PE=2 SV=2)

HSP 1 Score: 107.457 bits (267), Expect = 7.838e-26
Identity = 52/119 (43.70%), Postives = 81/119 (68.07%), Query Frame = 1 
Query:  223 LDPGPEHYSCLVDLLCRVGELNKAWELLNEMLYNKGIGNCSVSMWGALLNACVDSGNIELGKLAAQRALELDPQNAGICVMLSNLYARFGMWDEIGRLRVLIKERGLRKDVVGCSWVQV 579
            + P  EHYSC+V+LL R G+L +A++L+ EM +     +C   +WGALLN+C    N++L ++AA++   L+P+N G  V+LSN+YA  GMW E+  +R  ++  GL+K+  GCSW+QV
Sbjct:  521 IKPRLEHYSCMVNLLGRAGKLQEAYDLIKEMPFEPD--SC---VWGALLNSCRLQNNVDLAEIAAEKLFHLEPENPGTYVLLSNIYAAKGMWTEVDSIRNKMESLGLKKN-PGCSWIQV 633
[Close]
BLAST of Ca_04876 vs. DB:Swiss
Match: PP272_ARATH (Pentatricopeptide repeat-containing protein At3g49170, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=EMB2261 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.061e-25
Identity = 55/120 (45.83%), Postives = 72/120 (60.00%), Query Frame = 1 
Query:  220 KLDPGPEHYSCLVDLLCRVGELNKAWELLNEMLYNKGIGNCSVSMWGALLNACVDSGNIELGKLAAQRALELDPQNAGICVMLSNLYARFGMWDEIGRLRVLIKERGLRKDVVGCSWVQV 579
            K+ P  EHY+C+VDLLCR G L  A+E +N M +        V +W   L AC    N ELGKLAA++ LELDP      + LSN+YA  G W+E   +R  +KER L K+  GCSW++V
Sbjct:  606 KIKPKMEHYACMVDLLCRAGLLTDAFEFINTMPFQ-----ADVLVWRTFLGACRVHSNTELGKLAARKILELDPNEPAAYIQLSNIYACAGKWEESTEMRRKMKERNLVKE-GGCSWIEV 719
[Close]
BLAST of Ca_04876 vs. DB:Swiss
Match: PP390_ARATH (Pentatricopeptide repeat-containing protein At5g16860 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H92 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 3.663e-24
Identity = 52/127 (40.94%), Postives = 73/127 (57.48%), Query Frame = 1 
Query:  196 LNKASDFIKLDPGPEHYSCLVDLLCRVGELNKAWELLNEMLYNKGIGNCSVSMWGALLNACVDSGNIELGKLAAQRALELDPQNAGICVMLSNLYARFGMWDEIGRLRVLIKERGLRKDVVGCSWVQ 576
             N+      + PGPEHY+CLVDLL R G LN A  L+ EM            +W A L+ C   G +ELG+ AA++  EL   + G   +LSNLYA  G W ++ R+R L++ +G++K   GCSWV+
Sbjct:  602 FNRMKTVFGVSPGPEHYACLVDLLGRAGRLNAALRLIEEMPMEP-----PPVVWVAFLSCCRIHGKVELGEYAAEKITELASNHDGSYTLLSNLYANAGRWKDVTRIRSLMRHKGVKKR-PGCSWVE 722
[Close]
BLAST of Ca_04876 vs. DB:Swiss
Match: PPR45_ARATH (Pentatricopeptide repeat-containing protein At1g15510, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PCMP-H73 PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 5.247e-24
Identity = 54/130 (41.54%), Postives = 80/130 (61.54%), Query Frame = 1 
Query:  190 LMLNKASDFIKLDPGPEHYSCLVDLLCRVGELNKAWELLNEMLYNKGIGNCSVSMWGALLNACVDSGNIELGKLAAQRALELDPQNAGICVMLSNLYARFGMWDEIGRLRVLIKERGLRKDVVGCSWVQV 579
            +  +K  D+  + P  +HY+C+VDLL R GEL +A + + +M           ++WGALLNAC     I+LG+L+AQ   ELD ++ G  ++L NLYA  G W E+ ++R ++KE GL  D  GCSWV+V
Sbjct:  619 MYFSKMEDY-GVTPNLKHYACVVDLLGRAGELQEAHKFIQKMPVTP-----DPAVWGALLNACRIHHKIDLGELSAQHIFELDKKSVGYYILLCNLYADCGKWREVAKVRRMMKENGLTVD-AGCSWVEV 741
[Close]
BLAST of Ca_04876 vs. DB:Swiss
Match: PP320_ARATH (Pentatricopeptide repeat-containing protein DOT4, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=DOT4 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.852e-23
Identity = 46/120 (38.33%), Postives = 76/120 (63.33%), Query Frame = 1 
Query:  220 KLDPGPEHYSCLVDLLCRVGELNKAWELLNEMLYNKGIGNCSVSMWGALLNACVDSGNIELGKLAAQRALELDPQNAGICVMLSNLYARFGMWDEIGRLRVLIKERGLRKDVVGCSWVQV 579
            K++P  EHY+C+VD+L R G+L KA+  +  M           ++WGALL  C    +++L +  A++  EL+P+N G  V+++N+YA    W+++ RLR  I +RGLRK+  GCSW+++
Sbjct:  631 KIEPTVEHYACIVDMLARTGDLIKAYRFIENMPIPP-----DATIWGALLCGCRIHHDVKLAEKVAEKVFELEPENTGYYVLMANIYAEAEKWEQVKRLRKRIGQRGLRKN-PGCSWIEI 744
[Close]
BLAST of Ca_04876 vs. DB:Swiss
Match: PPR57_ARATH (Pentatricopeptide repeat-containing protein At1g25360 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H74 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 3.087e-23
Identity = 44/122 (36.07%), Postives = 80/122 (65.57%), Query Frame = 1 
Query:  220 KLDPGPEHYSCLVDLLCRVGELNKAWELLNEMLYNKGIGNCSVSMWGALLNACVDSGNIELGKLAAQRALELDPQNAGICVMLSNLYARFGMWDEIGRLRVLIKERGLRKDVVGCSWVQVTS 585
            ++ PG +HY+ L+DLLCR G+ + A  ++  + +       +  +W ALL+ C   GN+ELG +AA +   L P++ G  ++LSN++A  G W+E+ R+R L+++RG++K+ V CSW+++ +
Sbjct:  549 RIPPGADHYARLIDLLCRSGKFSDAESVIESLPFKP-----TAEIWEALLSGCRVHGNMELGIIAADKLFGLIPEHDGTYMLLSNMHAATGQWEEVARVRKLMRDRGVKKE-VACSWIEMET 664
[Close]
BLAST of Ca_04876 vs. DB:Swiss
Match: PP116_ARATH (Pentatricopeptide repeat-containing protein At1g71490 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E67 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 5.955e-23
Identity = 46/121 (38.02%), Postives = 76/121 (62.81%), Query Frame = 1 
Query:  223 LDPGPEHYSCLVDLLCRVGELNKAWELLNEMLYNKGIGNCSVSMWGALLNACVDSGNIELGKLAAQRALELDPQNAGICVMLSNLYARFGMWDEIGRLRVLIKERGLRKDVVGCSWVQVTS 585
            + P  +H+SC+VDL  R G L KA ++++ M Y       S + W  LLNAC   GN ++GK AA++ LE+ P+N G  V+++N+YA  G W ++  +R ++++ G++KD  GC+W+   S
Sbjct:  515 IRPCLQHFSCMVDLYGRAGFLAKAKDIIHNMPYKP-----SGATWATLLNACHIHGNTQIGKWAAEKLLEMKPENPGYYVLIANMYAAAGSWSKLAEVRTIMRDLGVKKD-PGCAWIDTDS 629
[Close]
BLAST of Ca_04876 vs. DB:Swiss
Match: PP301_ARATH (Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H24 PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.128e-22
Identity = 47/117 (40.17%), Postives = 74/117 (63.25%), Query Frame = 1 
Query:  229 PGPEHYSCLVDLLCRVGELNKAWELLNEMLYNKGIGNCSVSMWGALLNACVDSGNIELGKLAAQRALELDPQNAGICVMLSNLYARFGMWDEIGRLRVLIKERGLRKDVVGCSWVQV 579
            P  +HY+C+VDLL R G L  A  L+  M +         ++WG LL A    GN EL + AA +   ++P+N+G+ V+LSNLYA  G W ++G+LRV ++++G++K V G SW+++
Sbjct:  544 PNSQHYACMVDLLGRAGLLEDAHNLMKNMPFEP-----DAAIWGTLLGASRVHGNTELAETAADKIFAMEPENSGMYVLLSNLYASSGRWGDVGKLRVRMRDKGVKK-VPGYSWIEI 654
The following BLAST results are available for this feature:
BLAST of Ca_04876 vs. SwissProt
Analysis Date: 2013-10-24 (Homology Analysis: Kabuli C.arietinum mRNA vs Swissprot)
Total hits: 25
Match NameE-valueIdentityDescription
PP224_ARATH5.417e-2646.46Pentatricopeptide repeat-containing protein At3g12... [more]
PP229_ARATH8.649e-2442.50Pentatricopeptide repeat-containing protein At3g14... [more]
PPR53_ARATH9.562e-2343.70Pentatricopeptide repeat-containing protein At1g20... [more]
PP272_ARATH1.631e-2240.27Pentatricopeptide repeat-containing protein At3g49... [more]
PPR45_ARATH3.076e-2141.54Pentatricopeptide repeat-containing protein At1g15... [more]
PP390_ARATH1.527e-2041.27Pentatricopeptide repeat-containing protein At5g16... [more]
PP320_ARATH1.994e-2038.33Pentatricopeptide repeat-containing protein At4g18... [more]
PP403_ARATH3.401e-2033.16Putative pentatricopeptide repeat-containing prote... [more]
PP436_ARATH4.442e-2039.53Pentatricopeptide repeat-containing protein At5g59... [more]
PP301_ARATH4.442e-2040.17Pentatricopeptide repeat-containing protein At4g02... [more]

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BLAST of Ca_04876 vs. TrEMBL
Analysis Date: 2013-10-24 (Homology Analysis: Kabuli C.arietinum mRNA vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
G7J7U2_MEDTR3.301e-5789.43Pentatricopeptide repeat-containing protein OS=Med... [more]
K7KHG1_SOYBN1.174e-5475.86Uncharacterized protein OS=Glycine max PE=4 SV=1[more]
K7KSC8_SOYBN1.435e-5275.00Uncharacterized protein OS=Glycine max PE=4 SV=1[more]
D7U5E6_VITVI8.727e-4266.67Putative uncharacterized protein OS=Vitis vinifera... [more]
B9RG65_RICCO5.657e-4167.77Pentatricopeptide repeat-containing protein, putat... [more]
F6HDV1_VITVI1.221e-3565.22Putative uncharacterized protein OS=Vitis vinifera... [more]
M1CJD1_SOLTU1.763e-3459.17Uncharacterized protein OS=Solanum tuberosum GN=PG... [more]
M0RYA1_MUSAM3.324e-3361.02Uncharacterized protein OS=Musa acuminata subsp. m... [more]
R7WDM1_AEGTA3.440e-3054.55Uncharacterized protein OS=Aegilops tauschii GN=F7... [more]
K7UQ71_MAIZE3.440e-3055.37Uncharacterized protein OS=Zea mays GN=ZEAMMB73_10... [more]

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BLAST of Ca_04876 vs. DB:Swiss
Analysis Date: 2019-05-21 (BLAST: C. arietinum CDC Frontier (kabuli), Swissprot)
Total hits: 10
Match NameE-valueIdentityDescription
PP224_ARATH2.698e-3045.74Pentatricopeptide repeat-containing protein At3g12... [more]
PP229_ARATH1.100e-2742.15Pentatricopeptide repeat-containing protein At3g14... [more]
PPR53_ARATH7.838e-2643.70Pentatricopeptide repeat-containing protein At1g20... [more]
PP272_ARATH1.061e-2545.83Pentatricopeptide repeat-containing protein At3g49... [more]
PP390_ARATH3.663e-2440.94Pentatricopeptide repeat-containing protein At5g16... [more]
PPR45_ARATH5.247e-2441.54Pentatricopeptide repeat-containing protein At1g15... [more]
PP320_ARATH1.852e-2338.33Pentatricopeptide repeat-containing protein DOT4, ... [more]
PPR57_ARATH3.087e-2336.07Pentatricopeptide repeat-containing protein At1g25... [more]
PP116_ARATH5.955e-2338.02Pentatricopeptide repeat-containing protein At1g71... [more]
PP301_ARATH1.128e-2240.17Pentatricopeptide repeat-containing protein At4g02... [more]
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InterPro
Analysis Name: InterProScan analysis for kabuli C. arietinum unigenes
Date Performed: 2013-10-24
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF12854PPR_1coord: 82..105
score: 1.4
IPR002885Pentatricopeptide repeatTIGRFAMsTIGR00756PPR: pentatricopeptide repeat domaincoord: 82..106
score: 8.8
IPR002885Pentatricopeptide repeatPROFILEPS51375PPRcoord: 78..108
score: 8.638coord: 149..183
score: 6.533coord: 115..145
score: 5
IPR011990Tetratricopeptide-like helicalGENE3D1.25.40.10no descriptioncoord: 75..168
score: 2.5
NoneNo IPR availablePANTHERPTHR24015FAMILY NOT NAMEDcoord: 75..193
score: 7.2

Sequences
The following sequences are available for this feature:

mRNA sequence

>Ca_04876_v1.0_kabuli ID=Ca_04876_v1.0_kabuli; Name=Ca_04876; organism=Cicer arietinum; type=mRNA; length=588bp
ATGTCGGATCAAGTAGAGATGTTCAAAGAATACATAGGGAAGCTTAAAGG
TATAGTTGGAGAAGAGAAGACAAATTACATCTTAGCCAACACTCTTTACC
TTGTGGTAGCTGGAAGTAATGACCTTGCCAACACTTATTTTACTATTCGA
ACTAGACAATTGCACTATGATGTTCCTGCTTATACTGACCTTATGCTCAA
TAAAGCCTCTGATTTCATTAAGTTGGATCCTGGTCCAGAGCATTATAGTT
GCCTGGTTGATTTGCTTTGTAGGGTTGGAGAATTAAACAAGGCATGGGAA
TTACTTAATGAGATGCTCTATAATAAGGGAATAGGGAATTGTAGTGTCTC
TATGTGGGGAGCTCTACTCAATGCTTGTGTGGACAGTGGGAATATAGAGC
TGGGAAAATTGGCAGCTCAGAGGGCTCTGGAGTTAGATCCTCAAAATGCT
GGAATTTGTGTTATGCTATCGAACCTGTATGCCCGTTTTGGTATGTGGGA
TGAGATTGGACGTTTGAGAGTATTGATCAAAGAAAGAGGGTTAAGAAAAG
ATGTTGTTGGATGCAGTTGGGTTCAAGTGACAAGTTGA
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protein sequence of Ca_04876_v1.0_kabuli

>Ca_04876_v1.0_kabuli ID=Ca_04876_v1.0_kabuli; Name=Ca_04876_v1.0_kabuli; organism=Cicer arietinum; type=polypeptide; length=195bp
MSDQVEMFKEYIGKLKGIVGEEKTNYILANTLYLVVAGSNDLANTYFTIR
TRQLHYDVPAYTDLMLNKASDFIKLDPGPEHYSCLVDLLCRVGELNKAWE
LLNEMLYNKGIGNCSVSMWGALLNACVDSGNIELGKLAAQRALELDPQNA
GICVMLSNLYARFGMWDEIGRLRVLIKERGLRKDVVGCSWVQVTS
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mRNA from alignment at Ca5:31723455..31727064-

Legend: CDSmRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ca_04876_v1.0_kabuli ID=Ca_04876_v1.0_kabuli; Name=Ca_04876; organism=Cicer arietinum; type=mRNA; length=3610bp; location=Sequence derived from: Ca5:31723455..31727064- (Cicer arietinum
ATGTCGGATCAAGTAGAGATGTTCAAAGAATACATAGGGAAGCTTAAAGG
TATAGTTGGAGAAGAGAAGACAAATTACATCTTAGCCAACACTCTTTACC
TTGTGGTAGCTGGAAGTAATGACCTTGCCAACACTTATTTTACTATTCGA
ACTAGACAATTGCACTATGATGTTCCTGCTTATACTGACCTTATGCTCAA
TAAAGCCTCTGATTTCATTAAGGTATTTCATTTTTTTCAATAAAAAATTT
AAACAATAATAAAATACTACGTGAATTATTGATTGATGTTTTTATTTGGA
TGTTAAAAATTTTAATTGAAGGAAATATATCAACTTGGAGCACGTAGAAT
TGGAGTATTCAGTGTAGCACCTATTGGGTATTTACCATCAGTGAGGACTC
TAAGTGGGGGTGTATTTAGAAAGTCCAATGAGAAATACAATGAAGCAGCA
AGGTTATTCAATTCCAAACTGTCCAAGGAATTGGACTTCCTCAACTCTAA
CTTGCCCAACAGTAGGATTGTCTATATTGATATTTACACCCCTCTACTTG
ACATCATTGTCAACCCCAAAAAATATGGTAATGTTTTTTCTTTACGACAA
AAAAAATGGTAAACTAGTTGTTAGTAAATGTCCGTTTGCTACATATTAAA
AAATAATAATTTTGGTTAAAAATTATTTTGTAGAGATGTTAAAAAAAATG
TAAATTATTTATTTTGTGTTTATCTATTGTAATAATTTATTGAAAAGTTA
CTAAAAATAACTTTTCATTTAAATAGTTTTTAGATGTTTTTTTTATAGAC
TCTAGTCTTTTTAATAAATGGTAACAATTATAGATTAAAAAAATTTAAAT
TCTTTTCTTTAAAAAAAAGTGATTTTTATGATATAATATGCAACATATGA
ATTCTAAATTTAATCATTCATGATTTAGTTAAATAATTTAAAAAAAATTA
ATCATTCATGGTTTAGTTAAATAATTTTCAAAAATTTAATTTAATTTAAT
ATATGAATTCTAAATCTAATCATTCCTGATTTAGTTAAATGATTTAAAAA
AATTTAATTTAGTTCCTTAATCAAATACACGCTATAAAGTCGTGGACAGA
GGTTGCTGTGGCACAGGCAAAATAGAGGTTTCGGTGTTATGTAATCCTTT
TGATGTCATTTGTCCCGACAAATTTGAATATATTTTTTGGGATAGTTATC
ATCCTACGGAAGGAATATATAAAAAGCTTGTGGTCGAAATTCTTCCAAAA
TATTTGGATCGATTGTCATGAGTTGTGAACTTTGTCTATGGCATGTTAAT
TATATTAGATATATTTTTAATGTAAATTAATTTTACATTTACGTGTAATA
TAGTAATTATTTTTGAAAATGGTTATTAAATAGATCTATATGACAAGATC
ATAGATTCTCACGGCCGATTACAGCGAAAAACTATTATGTGAGTGGATAA
TTAATGATTAAGCTTTTATTTTTTTTTAAAAGTTAAACACACAACTAAAT
CATACTTCAACTAACAAAATAGTGATAAGAATTTTTGTTTAGTTATTTTT
TAATTTTAATTTTTGTTGGTATGAGTTGAAGTCTTTCTAATTCATGCGAG
TGCCTTTCCAACCGGCTGGTACAGGATCCATTCTTTTTTAATTTTTTGTC
TTAACAATGTCAATTCCAACATAGTACACACATGCAGGATTAAGGATTTG
TATTTATATATCCAAAGGTTCACCACAAAAATGTAAAAAGTATTGCTTAA
TCAACAACAATTAACTTATCCATGGGAAGTTTGTAATCAAGCTAATTGAA
AGCGTTAGTAATTATTCTGAGGCCATCTAACAGACAAAACAAGCATTTAA
CCCAATGTAAAATGCAGAGTTAGCTGATCAGAAAGCTATCACATTAAATA
ATAGGGTTTAGATTTACTTCTATTTAAAATAAATTAAATATACATAAAAA
ATGAGTCACAACTTACACTCTTCAACAACTTTCTGACCGTAAAAACTTGG
AGTGTAGACTATGTGATTCTTTTAATGCATATATGTCTCTCACAATTACC
TGTCTAATTTCCTTTACATCAATGACTTTCTTCTTGTGCTTCTATTTCTA
TCTATGATCCAACCCAATTGAGAAATGTTGAGAATGGCACATTGGGCAGT
GATATGGTCTGAATAGTGGCTATAAGTGGTCAATGTCTCTCACCTTACAC
GTCCAAGTTTTACATGTCCAACATAATTCAATTTTTACACAAATGTCACG
TTACTAATAATCTATCATCCATCAAGAAACTCCATGGTCACCTACTCATA
AAAGGCACTCTCTTCATTCTCCATGATATTCACACCCAACTCATTGCTAC
TTACACCTCATGCCTTCCCAACGACGACAACCTTCAGACACTAGTCAACA
CTTTCTTCAAATGCATGAATTCCACCAACCCATTACACTTCAATCTCATC
ATTTCTCATTTTTGTCACAAAGGTTTCCCCTCTCTTGCTCTCGCATCCTG
TTCCTTTATGCACACCAACGCTATTCCTTTAGATACATACGCTTTGTGTA
GCACTTTGACCGCTTCGTCGTAACTCAAAGACTTTCATTTTGGGAAGCAG
ATACATGCCCATGTTGTGAAATCAGGTTGGTCTTCTAGTGTTTTTGCGAG
TAGTGCTTTGATTGATTTTTTACTCTAAATTGTTGAATGTGAAAGATGCA
GCTCAAGTGTTTGATGAAATTCCTCACAAGAACACTGTTTGTGTTAATGC
ACTTTTGAGTGGTTATGGTGAGGCTGGGTTATGGGTTAAGGAGCTTGAAC
TAGTTAGGATGATGCCTGTGTTGAAATTGAAGTATGATCAGTTTACACTA
TCAGCAGCCTTACGGGCGTGCATTGGATTATCTTCTGTTGAAATTGGTGG
ACAACTGCATAGCTATTTGCTCCGTACTATACATGATATAGAGAGGGACT
GTTTCTGCAGAGCGCGTTGATTGAGATGTATGGAAAGTGTGGAATGGTAG
AGAAGGCTTGGCTTGTTTTCAAGTTGGCTGGAATGGAGATCAGAAAAGAA
AGGAATAGAGATGTTGTGTTATGGACTTCGATGCTTGGTGTGTATGGTAA
AAATGGACATTATAAGGAAGTAATTGATTTGTTCAGTGAAATGTTGGAGG
AAGGAATAAGACCTGATGGAGTAGCATTTCTGACAGTAATCTCAGCTTGC
GGTCATGCTGGTGTCGAGTATTTTGAATCTATGATGGTTTCAAGTTGGAT
CCTGGTCCAGAGCATTATAGTTGCCTGGTTGATTTGCTTTGTAGGGTTGG
AGAATTAAACAAGGCATGGGAATTACTTAATGAGATGCTCTATAATAAGG
GAATAGGGAATTGTAGTGTCTCTATGTGGGGAGCTCTACTCAATGCTTGT
GTGGACAGTGGGAATATAGAGCTGGGAAAATTGGCAGCTCAGAGGGCTCT
GGAGTTAGATCCTCAAAATGCTGGAATTTGTGTTATGCTATCGAACCTGT
ATGCCCGTTTTGGTATGTGGGATGAGATTGGACGTTTGAGAGTATTGATC
AAAGAAAGAGGGTTAAGAAAAGATGTTGTTGGATGCAGTTGGGTTCAAGT
GACAAGTTGA
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Coding sequence (CDS) from alignment at Ca5:31723455..31727064-

>Ca_04876_v1.0_kabuli ID=Ca_04876_v1.0_kabuli; Name=Ca_04876; organism=Cicer arietinum; type=CDS; length=588bp; location=Sequence derived from: Ca5:31723455..31727064- (Cicer arietinum
ATGTCGGATCAAGTAGAGATGTTCAAAGAATACATAGGGAAGCTTAAAGG
TATAGTTGGAGAAGAGAAGACAAATTACATCTTAGCCAACACTCTTTACC
TTGTGGTAGCTGGAAGTAATGACCTTGCCAACACTTATTTTACTATTCGA
ACTAGACAATTGCACTATGATGTTCCTGCTTATACTGACCTTATGCTCAA
TAAAGCCTCTGATTTCATTAAGTTGGATCCTGGTCCAGAGCATTATAGTT
GCCTGGTTGATTTGCTTTGTAGGGTTGGAGAATTAAACAAGGCATGGGAA
TTACTTAATGAGATGCTCTATAATAAGGGAATAGGGAATTGTAGTGTCTC
TATGTGGGGAGCTCTACTCAATGCTTGTGTGGACAGTGGGAATATAGAGC
TGGGAAAATTGGCAGCTCAGAGGGCTCTGGAGTTAGATCCTCAAAATGCT
GGAATTTGTGTTATGCTATCGAACCTGTATGCCCGTTTTGGTATGTGGGA
TGAGATTGGACGTTTGAGAGTATTGATCAAAGAAAGAGGGTTAAGAAAAG
ATGTTGTTGGATGCAGTTGGGTTCAAGTGACAAGTTGA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_rpt
IPR011990TPR-like_helical_dom_sf
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding