Ca_12707, Ca_12707_v1.0_kabuli (mRNA) Cicer arietinum

Transcript Overview
NameCa_12707
Unique NameCa_12707_v1.0_kabuli
TypemRNA
OrganismCicer arietinum (chickpea)
Sequence length390
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Ca5chromosomeCa5:43468271..43468660 -Cicer arietinum CDC Frontier genome v1.0n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Cicer arietinum CDC Frontier genome v1.02013-01-01
InterProScan analysis for kabuli C. arietinum unigenes2013-10-24
Homology Analysis: Kabuli C.arietinum mRNA vs TrEMBL2013-10-24
BLAST: C. arietinum CDC Frontier (kabuli), Swissprot2019-05-21
Expression: Chickpea heat stress response2023-09-21
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
cavuR363Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
cavuR386Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
capvR426Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
capvR444Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
caccR0552Cajanus cajan Asha genome v1.0Cajanus cajan
caccR0640Cajanus cajan Asha genome v1.0Cajanus cajan
caccR0690Cajanus cajan Asha genome v1.0Cajanus cajan
ascaL052Vigna angularis Jingnong 6 genome v1.1Vigna angularis
ascaL505Vigna angularis Jingnong 6 genome v1.1Vigna angularis
catifR378Vicia faba cv. Tiffany genome v1.0Vicia faba
cavfhR379Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
catifR437Vicia faba cv. Tiffany genome v1.0Vicia faba
cavfhR443Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
cavssR417Vicia sativa cv. Studenica genome v1.0Vicia sativa
cavssR467Vicia sativa cv. Studenica genome v1.0Vicia sativa
cavuaR346Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
cavuaR361Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
cacanR189Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
cacanR200Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
avjcaL271Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjcaL486Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
cacarR380Cicer arietinum
cacarR407Cicer arietinum

Orthologs
Gene/TranscriptAssemblySpecies
Vigun03g077200.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
Va03G083940.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
Vfaba.Tiffany.R1.2g095680.1Vicia faba cv. Tiffany genome v1.0Vicia faba
evm.model.Chr03.342Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
jg53704.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
LR48_mrnaVigan03g306900Vigna angularis Jingnong 6 genome v1.1Vigna angularis
Phvul.001G252600.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
rna-KK1_029004Cajanus cajan Asha genome v1.0Cajanus cajan
Vfaba.Hedin2.R1.2g117000.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
evm.model.Chr01.2243Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
rna-XM_004502359.3Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Ca_12707-CDS1Ca_12707-CDS1Cicer arietinumCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Ca_12707_v1.0_kabuliCa_12707_v1.0_kabuliCicer arietinumpolypeptide


Homology
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BLAST of Ca_12707 vs. TrEMBL
Match: G7J3Q9_MEDTR (Putative uncharacterized protein OS=Medicago truncatula GN=MTR_3g087110 PE=4 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 5.913e-35
Identity = 85/127 (66.93%), Postives = 97/127 (76.38%), Query Frame = 1 
Query:    1 MVVSLEALAMAGASGVECSIDIEEWERKDLEQYPPPHLLAQEEEEEKSSINRARRYTAQGKVYGL--PTTTSHFLPNKNSKKNDRESFTFTNHGEKLVRTMETRRPEECTRSIKLIMTRVLAMLIMI 375
            MVVSLEALAMAG S VE  IDIEEWER DLEQYPPPHLLAQ EE++K SIN A+ YT   KVYGL  PTT++HFLPN N+K++D    TFTNHGEK   T+ETRR ++C  SIKL M R L MLI +
Sbjct:    1 MVVSLEALAMAGTSSVEYGIDIEEWERNDLEQYPPPHLLAQ-EEDDKISINGAKGYTEGNKVYGLPSPTTSTHFLPNNNTKEHD---VTFTNHGEKGNGTLETRRLKKCASSIKL-MARALEMLISL 122
[Close]
BLAST of Ca_12707 vs. TrEMBL
Match: B9HNS9_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_767962 PE=4 SV=1)

HSP 1 Score: 58.9214 bits (141), Expect = 6.813e-7
Identity = 40/96 (41.67%), Postives = 52/96 (54.17%), Query Frame = 1 
Query:    1 MVVSLEALAMAGASGVECSIDIEEWERKDLEQYPPPHLLAQEEEE----EKSSINRARRYTAQGKVYGLPTTTSHFLP--NKNSKKNDRESFTFTN 270
            M  S+EALAMAG   +  ++DIEEWE+++LE  PPPHLLA+EEEE     K +    R   A GK  G+    +   P   K   K  R+ F   N
Sbjct:    1 MSASIEALAMAGVDYLIHNLDIEEWEQEELE-LPPPHLLAEEEEEVERKSKDNFPICRCCPASGKKDGILLAVTSMKPKLGKAHAKCTRKGFEQEN 95
The following BLAST results are available for this feature:
BLAST of Ca_12707 vs. TrEMBL
Analysis Date: 2013-10-24 (Homology Analysis: Kabuli C.arietinum mRNA vs TrEMBL)
Total hits: 2
Match NameE-valueIdentityDescription
G7J3Q9_MEDTR5.913e-3566.93Putative uncharacterized protein OS=Medicago trunc... [more]
B9HNS9_POPTR6.813e-741.67Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]
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BLAST of Ca_12707 vs. DB:Swiss
Analysis Date: 2019-05-21 (BLAST: C. arietinum CDC Frontier (kabuli), Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
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Expression

Available Analyses

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Download expression dataset for this feature
InterPro
Analysis Name: InterProScan analysis for kabuli C. arietinum unigenes
Date Performed: 2013-10-24
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSEGsegsegcoord: 5..11
score
NoneNo IPR availableSEGsegsegcoord: 4..20
score

Sequences
The following sequences are available for this feature:

mRNA sequence

>Ca_12707_v1.0_kabuli ID=Ca_12707_v1.0_kabuli; Name=Ca_12707; organism=Cicer arietinum; type=mRNA; length=390bp
ATGGTGGTTTCTTTAGAAGCATTGGCAATGGCTGGCGCAAGTGGTGTGGA
GTGTAGCATAGATATTGAAGAATGGGAACGCAAAGATTTAGAGCAATATC
CACCACCACATTTGCTAGCCCAAGAAGAAGAAGAAGAGAAAAGTAGCATT
AATAGAGCCAGAAGGTACACTGCTCAGGGCAAAGTATATGGCCTTCCTAC
CACTACAAGTCATTTCCTTCCGAATAAAAACAGCAAGAAGAATGACAGAG
AAAGTTTCACCTTCACCAATCATGGAGAAAAATTAGTTAGAACTATGGAA
ACTAGAAGGCCAGAAGAATGCACGAGGTCGATAAAATTAATTATGACCAG
AGTGCTTGCTATGTTAATCATGATCTTGGGCCATAATTAA
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protein sequence of Ca_12707_v1.0_kabuli

>Ca_12707_v1.0_kabuli ID=Ca_12707_v1.0_kabuli; Name=Ca_12707_v1.0_kabuli; organism=Cicer arietinum; type=polypeptide; length=129bp
MVVSLEALAMAGASGVECSIDIEEWERKDLEQYPPPHLLAQEEEEEKSSI
NRARRYTAQGKVYGLPTTTSHFLPNKNSKKNDRESFTFTNHGEKLVRTME
TRRPEECTRSIKLIMTRVLAMLIMILGHN
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mRNA from alignment at Ca5:43468271..43468660-

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ca_12707_v1.0_kabuli ID=Ca_12707_v1.0_kabuli; Name=Ca_12707; organism=Cicer arietinum; type=mRNA; length=390bp; location=Sequence derived from: Ca5:43468271..43468660- (Cicer arietinum
ATGGTGGTTTCTTTAGAAGCATTGGCAATGGCTGGCGCAAGTGGTGTGGA
GTGTAGCATAGATATTGAAGAATGGGAACGCAAAGATTTAGAGCAATATC
CACCACCACATTTGCTAGCCCAAGAAGAAGAAGAAGAGAAAAGTAGCATT
AATAGAGCCAGAAGGTACACTGCTCAGGGCAAAGTATATGGCCTTCCTAC
CACTACAAGTCATTTCCTTCCGAATAAAAACAGCAAGAAGAATGACAGAG
AAAGTTTCACCTTCACCAATCATGGAGAAAAATTAGTTAGAACTATGGAA
ACTAGAAGGCCAGAAGAATGCACGAGGTCGATAAAATTAATTATGACCAG
AGTGCTTGCTATGTTAATCATGATCTTGGGCCATAATTAA
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Coding sequence (CDS) from alignment at Ca5:43468271..43468660-

>Ca_12707_v1.0_kabuli ID=Ca_12707_v1.0_kabuli; Name=Ca_12707; organism=Cicer arietinum; type=CDS; length=390bp; location=Sequence derived from: Ca5:43468271..43468660- (Cicer arietinum
ATGGTGGTTTCTTTAGAAGCATTGGCAATGGCTGGCGCAAGTGGTGTGGA
GTGTAGCATAGATATTGAAGAATGGGAACGCAAAGATTTAGAGCAATATC
CACCACCACATTTGCTAGCCCAAGAAGAAGAAGAAGAGAAAAGTAGCATT
AATAGAGCCAGAAGGTACACTGCTCAGGGCAAAGTATATGGCCTTCCTAC
CACTACAAGTCATTTCCTTCCGAATAAAAACAGCAAGAAGAATGACAGAG
AAAGTTTCACCTTCACCAATCATGGAGAAAAATTAGTTAGAACTATGGAA
ACTAGAAGGCCAGAAGAATGCACGAGGTCGATAAAATTAATTATGACCAG
AGTGCTTGCTATGTTAATCATGATCTTGGGCCATAATTAA
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