Ca_12719, Ca_12719_v1.0_kabuli (mRNA) Cicer arietinum
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Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of Ca_12719 vs. TrEMBL
Match: I1JGF8_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 5.394e-11 Identity = 44/123 (35.77%), Postives = 60/123 (48.78%), Query Frame = 1 Query: 7 YHQRLDGLLLEDVVFTPYDDDRANHPFVSVSMFSGYLRCGGVSVPYLPERCLRQFGRIQCIPRDVPPMP-----DNVDWVWQSTMRSSVETFRRLYHVATFPGEVTADYYAWYISVSHPLILP 360
Y D L + DV + PY + R F +S F G LR G + V PER +RQFG IQ IP PP+ D++D W E + PG+V+ADY W+ +SHP ++P
Sbjct: 379 YRACCDALTVTDVSWFPYTEHRGVKAFELISSFHGQLRLGPMVVTARPERVVRQFGYIQSIP--PPPVSARLSHDDIDDKWM----HFAEHVLPAVELCLVPGQVSADYMEWFFRISHPFMIP 495
BLAST of Ca_12719 vs. TrEMBL
Match: Q2HSV3_MEDTR (IMP dehydrogenase/GMP reductase, putative OS=Medicago truncatula GN=MtrDRAFT_AC150891g58v2 PE=4 SV=2) HSP 1 Score: 65.0846 bits (157), Expect = 1.125e-8 Identity = 47/129 (36.43%), Postives = 65/129 (50.39%), Query Frame = 1 Query: 1 MAYHQRLDGLLLEDVVFTPYDDDRANHPFVSVSMFSGYLRCGGVSV-PYLPERCLRQFGRIQCI---PRDVPPMPDNVDWVWQSTMRSSVETFRRLYHVATFPGEVT---AD-YYAWYISVSHPLILPP 363
+ Y LD + +DV + PY++ R F V +SG++ CG V +LPER LRQ+G +Q I P DV +P ++ Q+ + T + GE T AD Y WY VSHP ILPP
Sbjct: 420 VTYRSLLDRIQFDDVCWRPYEEHREIQDFEEVFWYSGWIMCGVCRVYRHLPERVLRQYGYVQTIRRHPTDVADLPP--PYIVQAFVDFRTHTL-KADDWGEQAGEQTWRMADGYVLWYTRVSHPQILPP 545
BLAST of Ca_12719 vs. TrEMBL
Match: A2Q1N2_MEDTR (IMP dehydrogenase/GMP reductase, putative OS=Medicago truncatula GN=MtrDRAFT_AC148970g23v2 PE=4 SV=1) HSP 1 Score: 62.003 bits (149), Expect = 9.521e-8 Identity = 40/117 (34.19%), Postives = 58/117 (49.57%), Query Frame = 1 Query: 34 LEDVVFTPYDDDRANHPFVSVSMFSGYLRCGGVSV-PYLPERCLRQFGRIQCIP------RDVPPMPDNVDWVWQSTMRSSVETFRRLYHVATFPGEVTADYYAWYISVSHPLILPP 363
L+DV + PY++ R F V +SG++ CG V +L ER LRQ+G +Q IP RD+P P ++ ++ +++ R V Y WY VSHP ILPP
Sbjct: 3 LDDVCWRPYEEHREIQDFEEVFWYSGWIMCGVRRVYRHLSERVLRQYGYVQTIPRHPTDVRDLP--PPSIVQMFVDFRTHTLKADARGEQAGEDTWRVADGYVLWYTRVSHPQILPP 117
BLAST of Ca_12719 vs. TrEMBL
Match: A2Q323_MEDTR (IMP dehydrogenase/GMP reductase, related OS=Medicago truncatula GN=MtrDRAFT_AC154391g31v2 PE=4 SV=1) HSP 1 Score: 61.2326 bits (147), Expect = 1.624e-7 Identity = 41/125 (32.80%), Postives = 58/125 (46.40%), Query Frame = 1 Query: 31 LLEDVVFTPYDDDRANHPFVSVSMFSGYLRCGGVSV-PYLPERCLRQFGRIQCIPRDVPPMPDNVDWVWQSTMRSSVETFRRLYHVA-----TFPGEVTADYYAWYISVSHPLILPPSTVAPSSP 387
+++DV F+ Y D R HPF + +SG+L CG V +LPER Q +Q DV P +V V + + ++ + + A P Y WY VSHP ILPP +P P
Sbjct: 336 MVDDVRFSTYGDHRVVHPFQLIVTYSGWLMCGKDMVYRHLPERVKMQLFYVQ----DVSRHPSSVAQVPTHDLTTVLQNAQAWFFTAWGDACERPWHHVPGYMVWYAKVSHPRILPPDEGSPPRP 456
BLAST of Ca_12719 vs. TrEMBL
Match: I1L4B2_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1) HSP 1 Score: 60.8474 bits (146), Expect = 2.121e-7 Identity = 42/133 (31.58%), Postives = 61/133 (45.86%), Query Frame = 1 Query: 4 AYHQRLDGLLLEDVVFTPYDDDRANHPFVSVSMFSGYLRCGGVSVPYLPERCLRQFGRIQCIPRDVPPMPDNVDWVWQSTMRSSVETFR----RLYHVATFPGEVTADYYAWYISVSHPLILPPSTVAPSSPH 390
+Y +RL+ L + DV + Y + R F S +SG L G V+V Y PE+ +RQFG IP PP+ WV + + + V G ++DY W+ +SHP + P V P PH
Sbjct: 289 SYRERLNRLRISDVCWILYGEHREVQDFHVRSCYSGLLHWGLVAVYYRPEKVVRQFGYTPAIP--APPVD---SWVSYDDIHDRWMHYEGHIVPVGEVCVVLGACSSDYIEWFFRISHPFMTPGHAVDP-LPH 415
BLAST of Ca_12719 vs. TrEMBL
Match: A7UQU7_MEDTR (IMP dehydrogenase/GMP reductase, putative OS=Medicago truncatula GN=MtrDRAFT_AC139525g19v2 PE=4 SV=1) HSP 1 Score: 59.6918 bits (143), Expect = 4.725e-7 Identity = 32/76 (42.11%), Postives = 45/76 (59.21%), Query Frame = 1 Query: 1 MAYHQRLDGLLLEDVVFTPYDDDRANHPFVSVSMFSGYLRCGGVSV-PYLPERCLRQFGRIQCIP------RDVPP 207
+ Y LD + L+DV + PY++ R H F V +SG++ CG V +LPER LRQ+G +Q IP RD+PP
Sbjct: 398 ITYRSLLDRIQLDDVCWRPYEEHREIHDFEEVFWYSGWIMCGVRRVYRHLPERVLRQYGYVQTIPRHPTDVRDLPP 473 The following BLAST results are available for this feature:
BLAST of Ca_12719 vs. TrEMBL
Analysis Date: 2013-10-24 (Homology Analysis: Kabuli C.arietinum mRNA vs TrEMBL) Total hits: 6 Position : 0 Zoom : x 1
BLAST of Ca_12719 vs. DB:Swiss
Analysis Date: 2019-05-21 (BLAST: C. arietinum CDC Frontier (kabuli), Swissprot) Total hits: 0 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterProScan analysis for kabuli C. arietinum unigenes
Date Performed: 2013-10-24 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >Ca_12719_v1.0_kabuli ID=Ca_12719_v1.0_kabuli; Name=Ca_12719; organism=Cicer arietinum; type=mRNA; length=564bpback to top protein sequence of Ca_12719_v1.0_kabuli >Ca_12719_v1.0_kabuli ID=Ca_12719_v1.0_kabuli; Name=Ca_12719_v1.0_kabuli; organism=Cicer arietinum; type=polypeptide; length=187bpback to top mRNA from alignment at Ca5:43366164..43366727+ Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below.>Ca_12719_v1.0_kabuli ID=Ca_12719_v1.0_kabuli; Name=Ca_12719; organism=Cicer arietinum; type=mRNA; length=564bp; location=Sequence derived from: Ca5:43366164..43366727+ (Cicer arietinumback to top Coding sequence (CDS) from alignment at Ca5:43366164..43366727+ >Ca_12719_v1.0_kabuli ID=Ca_12719_v1.0_kabuli; Name=Ca_12719; organism=Cicer arietinum; type=CDS; length=564bp; location=Sequence derived from: Ca5:43366164..43366727+ (Cicer arietinumback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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