Ca_12719, Ca_12719_v1.0_kabuli (mRNA) Cicer arietinum
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of Ca_12719 vs. TrEMBL
Match: I1JGF8_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 5.394e-11 Identity = 44/123 (35.77%), Postives = 60/123 (48.78%), Query Frame = 1 Query: 7 YHQRLDGLLLEDVVFTPYDDDRANHPFVSVSMFSGYLRCGGVSVPYLPERCLRQFGRIQCIPRDVPPMP-----DNVDWVWQSTMRSSVETFRRLYHVATFPGEVTADYYAWYISVSHPLILP 360 Y D L + DV + PY + R F +S F G LR G + V PER +RQFG IQ IP PP+ D++D W E + PG+V+ADY W+ +SHP ++P Sbjct: 379 YRACCDALTVTDVSWFPYTEHRGVKAFELISSFHGQLRLGPMVVTARPERVVRQFGYIQSIP--PPPVSARLSHDDIDDKWM----HFAEHVLPAVELCLVPGQVSADYMEWFFRISHPFMIP 495
BLAST of Ca_12719 vs. TrEMBL
Match: Q2HSV3_MEDTR (IMP dehydrogenase/GMP reductase, putative OS=Medicago truncatula GN=MtrDRAFT_AC150891g58v2 PE=4 SV=2) HSP 1 Score: 65.0846 bits (157), Expect = 1.125e-8 Identity = 47/129 (36.43%), Postives = 65/129 (50.39%), Query Frame = 1 Query: 1 MAYHQRLDGLLLEDVVFTPYDDDRANHPFVSVSMFSGYLRCGGVSV-PYLPERCLRQFGRIQCI---PRDVPPMPDNVDWVWQSTMRSSVETFRRLYHVATFPGEVT---AD-YYAWYISVSHPLILPP 363 + Y LD + +DV + PY++ R F V +SG++ CG V +LPER LRQ+G +Q I P DV +P ++ Q+ + T + GE T AD Y WY VSHP ILPP Sbjct: 420 VTYRSLLDRIQFDDVCWRPYEEHREIQDFEEVFWYSGWIMCGVCRVYRHLPERVLRQYGYVQTIRRHPTDVADLPP--PYIVQAFVDFRTHTL-KADDWGEQAGEQTWRMADGYVLWYTRVSHPQILPP 545
BLAST of Ca_12719 vs. TrEMBL
Match: A2Q1N2_MEDTR (IMP dehydrogenase/GMP reductase, putative OS=Medicago truncatula GN=MtrDRAFT_AC148970g23v2 PE=4 SV=1) HSP 1 Score: 62.003 bits (149), Expect = 9.521e-8 Identity = 40/117 (34.19%), Postives = 58/117 (49.57%), Query Frame = 1 Query: 34 LEDVVFTPYDDDRANHPFVSVSMFSGYLRCGGVSV-PYLPERCLRQFGRIQCIP------RDVPPMPDNVDWVWQSTMRSSVETFRRLYHVATFPGEVTADYYAWYISVSHPLILPP 363 L+DV + PY++ R F V +SG++ CG V +L ER LRQ+G +Q IP RD+P P ++ ++ +++ R V Y WY VSHP ILPP Sbjct: 3 LDDVCWRPYEEHREIQDFEEVFWYSGWIMCGVRRVYRHLSERVLRQYGYVQTIPRHPTDVRDLP--PPSIVQMFVDFRTHTLKADARGEQAGEDTWRVADGYVLWYTRVSHPQILPP 117
BLAST of Ca_12719 vs. TrEMBL
Match: A2Q323_MEDTR (IMP dehydrogenase/GMP reductase, related OS=Medicago truncatula GN=MtrDRAFT_AC154391g31v2 PE=4 SV=1) HSP 1 Score: 61.2326 bits (147), Expect = 1.624e-7 Identity = 41/125 (32.80%), Postives = 58/125 (46.40%), Query Frame = 1 Query: 31 LLEDVVFTPYDDDRANHPFVSVSMFSGYLRCGGVSV-PYLPERCLRQFGRIQCIPRDVPPMPDNVDWVWQSTMRSSVETFRRLYHVA-----TFPGEVTADYYAWYISVSHPLILPPSTVAPSSP 387 +++DV F+ Y D R HPF + +SG+L CG V +LPER Q +Q DV P +V V + + ++ + + A P Y WY VSHP ILPP +P P Sbjct: 336 MVDDVRFSTYGDHRVVHPFQLIVTYSGWLMCGKDMVYRHLPERVKMQLFYVQ----DVSRHPSSVAQVPTHDLTTVLQNAQAWFFTAWGDACERPWHHVPGYMVWYAKVSHPRILPPDEGSPPRP 456
BLAST of Ca_12719 vs. TrEMBL
Match: I1L4B2_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1) HSP 1 Score: 60.8474 bits (146), Expect = 2.121e-7 Identity = 42/133 (31.58%), Postives = 61/133 (45.86%), Query Frame = 1 Query: 4 AYHQRLDGLLLEDVVFTPYDDDRANHPFVSVSMFSGYLRCGGVSVPYLPERCLRQFGRIQCIPRDVPPMPDNVDWVWQSTMRSSVETFR----RLYHVATFPGEVTADYYAWYISVSHPLILPPSTVAPSSPH 390 +Y +RL+ L + DV + Y + R F S +SG L G V+V Y PE+ +RQFG IP PP+ WV + + + V G ++DY W+ +SHP + P V P PH Sbjct: 289 SYRERLNRLRISDVCWILYGEHREVQDFHVRSCYSGLLHWGLVAVYYRPEKVVRQFGYTPAIP--APPVD---SWVSYDDIHDRWMHYEGHIVPVGEVCVVLGACSSDYIEWFFRISHPFMTPGHAVDP-LPH 415
BLAST of Ca_12719 vs. TrEMBL
Match: A7UQU7_MEDTR (IMP dehydrogenase/GMP reductase, putative OS=Medicago truncatula GN=MtrDRAFT_AC139525g19v2 PE=4 SV=1) HSP 1 Score: 59.6918 bits (143), Expect = 4.725e-7 Identity = 32/76 (42.11%), Postives = 45/76 (59.21%), Query Frame = 1 Query: 1 MAYHQRLDGLLLEDVVFTPYDDDRANHPFVSVSMFSGYLRCGGVSV-PYLPERCLRQFGRIQCIP------RDVPP 207 + Y LD + L+DV + PY++ R H F V +SG++ CG V +LPER LRQ+G +Q IP RD+PP Sbjct: 398 ITYRSLLDRIQLDDVCWRPYEEHREIHDFEEVFWYSGWIMCGVRRVYRHLPERVLRQYGYVQTIPRHPTDVRDLPP 473 The following BLAST results are available for this feature:
BLAST of Ca_12719 vs. TrEMBL
Analysis Date: 2013-10-24 (Homology Analysis: Kabuli C.arietinum mRNA vs TrEMBL) Total hits: 6 Position : 0 Zoom : x 1
BLAST of Ca_12719 vs. DB:Swiss
Analysis Date: 2019-05-21 (BLAST: C. arietinum CDC Frontier (kabuli), Swissprot) Total hits: 0 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterProScan analysis for kabuli C. arietinum unigenes
Date Performed: 2013-10-24 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >Ca_12719_v1.0_kabuli ID=Ca_12719_v1.0_kabuli; Name=Ca_12719; organism=Cicer arietinum; type=mRNA; length=564bpback to top protein sequence of Ca_12719_v1.0_kabuli >Ca_12719_v1.0_kabuli ID=Ca_12719_v1.0_kabuli; Name=Ca_12719_v1.0_kabuli; organism=Cicer arietinum; type=polypeptide; length=187bpback to top mRNA from alignment at Ca5:43366164..43366727+ Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below.>Ca_12719_v1.0_kabuli ID=Ca_12719_v1.0_kabuli; Name=Ca_12719; organism=Cicer arietinum; type=mRNA; length=564bp; location=Sequence derived from: Ca5:43366164..43366727+ (Cicer arietinumback to top Coding sequence (CDS) from alignment at Ca5:43366164..43366727+ >Ca_12719_v1.0_kabuli ID=Ca_12719_v1.0_kabuli; Name=Ca_12719; organism=Cicer arietinum; type=CDS; length=564bp; location=Sequence derived from: Ca5:43366164..43366727+ (Cicer arietinumback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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