Ca_02405, Ca_02405_v1.0_kabuli (mRNA) Cicer arietinum

Transcript Overview
NameCa_02405
Unique NameCa_02405_v1.0_kabuli
TypemRNA
OrganismCicer arietinum (chickpea)
Sequence length348
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Ca8chromosomeCa8:1970380..1971206 +Cicer arietinum CDC Frontier genome v1.0n/a
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
capsR689Pisum sativum Cameor genome v1aPisum sativum
capsR701Pisum sativum Cameor genome v1aPisum sativum
cavuR665Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
cavuR671Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
cavuR686Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
capvR781Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
capvR787Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
capvR803Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
caccR1084Cajanus cajan Asha genome v1.0Cajanus cajan
caccR1087Cajanus cajan Asha genome v1.0Cajanus cajan
caccR1119Cajanus cajan Asha genome v1.0Cajanus cajan
ancaL0512Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancaL0555Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancaL1010Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancaL1016Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
cazwsR599Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
cazwsR602Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
catifR668Vicia faba cv. Tiffany genome v1.0Vicia faba
catifR685Vicia faba cv. Tiffany genome v1.0Vicia faba
catifR690Vicia faba cv. Tiffany genome v1.0Vicia faba
cavfhR676Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
cavfhR691Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
cavfhR696Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
cavrvR672Vigna radiata cv. VC1973A genome v6.0Vigna radiata
cavrvR703Vigna radiata cv. VC1973A genome v6.0Vigna radiata
cavssR739Vicia sativa cv. Studenica genome v1.0Vicia sativa
cavssR758Vicia sativa cv. Studenica genome v1.0Vicia sativa
cavssR761Vicia sativa cv. Studenica genome v1.0Vicia sativa
cavuaR631Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
cavuaR632Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
cavuaR652Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
cacanR330Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
cacanR348Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
avjcaL325Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjcaL411Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjcaL712Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
cacarR609Cicer arietinum
cacarR624Cicer arietinum
cacarR629Cicer arietinum

Orthologs
Gene/TranscriptAssemblySpecies
rna-KK1_013570Cajanus cajan Asha genome v1.0Cajanus cajan
rna-TanjilR_27746Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
rna-TanjilR_25433Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
evm.model.Chr02.1658.1.62113174Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
Psat02G0530600-T1Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
Phvul.002G153700.2Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
Psat2g181400.1Pisum sativum Cameor genome v1aPisum sativum
Vfaba.Hedin2.R1.1g384680.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
rna-XM_022787520.1Vigna radiata cv. VC1973A genome v6.0Vigna radiata
jg3902.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Va06G005140.4Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
Vigun02g172600.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
Vfaba.Tiffany.R1.1g314000.1Vicia faba cv. Tiffany genome v1.0Vicia faba

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
rna-XM_004511550.3Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Ca_02405-CDS1Ca_02405-CDS1Cicer arietinumCDS
Ca_02405-CDS2Ca_02405-CDS2Cicer arietinumCDS
Ca_02405-CDS3Ca_02405-CDS3Cicer arietinumCDS
Ca_02405-CDS4Ca_02405-CDS4Cicer arietinumCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Ca_02405_v1.0_kabuliCa_02405_v1.0_kabuliCicer arietinumpolypeptide


Homology
[Close]
BLAST of Ca_02405 vs. SwissProt
Match: NRPD1_ARATH (DNA-directed RNA polymerase IV subunit 1 OS=Arabidopsis thaliana GN=NRPD1 PE=1 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 1.201e-27
Identity = 57/105 (54.29%), Postives = 72/105 (68.57%), Query Frame = 1 
Query:   10 EDLATEHIVPSGLIKAIKFDVLTGEDIEKISALEINAPTQVTCSDLGLPNLSLGCTTCGSKDRKSCEGHFGAIKFPFTILHPYFMAEIAEILNKICPACKSIRRE 324
            ED   E  VP G + +I F +    D +K+S LE+ AP QVT S LGLPN    C TCGSKDRK CEGHFG I F ++I++PYF+ E+A +LNKICP CK IR++
Sbjct:    2 EDDCEELQVPVGTLTSIGFSISNNNDRDKMSVLEVEAPNQVTDSRLGLPNPDSVCRTCGSKDRKVCEGHFGVINFAYSIINPYFLKEVAALLNKICPGCKYIRKK 106
[Close]
BLAST of Ca_02405 vs. SwissProt
Match: NRPE1_ARATH (DNA-directed RNA polymerase V subunit 1 OS=Arabidopsis thaliana GN=NRPE1 PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.585e-11
Identity = 38/106 (35.85%), Postives = 60/106 (56.60%), Query Frame = 1 
Query:   10 EDLATEHIVPSGLIKAIKFDVLTGEDI--EKISALEINAPTQVTCSDLGLPNLSLGCTTCGSKDRKSCEGHFGAIKFPFTILHPYFMAEIAEILNKICPACKSIRR 321
            E+ +T  I+  G I  I F + +  +I  + IS   IN P+Q+T + LGLP     C +CG+ +   CEGHFG I+ P  I HP  + E+ ++L+ +C  C  I++
Sbjct:    2 EEESTSEIL-DGEIVGITFALASHHEICIQSISESAINHPSQLTNAFLGLPLEFGKCESCGATEPDKCEGHFGYIQLPVPIYHPAHVNELKQMLSLLCLKCLKIKK 106
[Close]
BLAST of Ca_02405 vs. SwissProt
Match: RPC1_GIAIN (DNA-directed RNA polymerase III subunit RPC1 OS=Giardia intestinalis GN=RPOA3 PE=3 SV=1)

HSP 1 Score: 57.7658 bits (138), Expect = 2.130e-8
Identity = 35/110 (31.82%), Postives = 51/110 (46.36%), Query Frame = 1 
Query:   22 TEHIVPSGLIKAIKFDVLTGEDIEKISALEINAP-----------TQVTCSDLGLPNLSLGCTTCGSKDRKSCEGHFGAIKFPFTILHPYFMAEIAEILNKICPACKSIR 318
            TEH  P  + K + F VL+   + K+S ++I  P             V    LGL +    C TCG KD K C GHFG I     + HP  + +   +L+ +CP C  ++
Sbjct:   19 TEHRFPKRVEKLV-FSVLSSNALMKLSEVQITTPILYEHYPSPATNGVLDKRLGLSDKVGKCATCG-KDTKMCIGHFGTISLALPVFHPGLINDARTMLSIVCPFCSRVK 126
[Close]
BLAST of Ca_02405 vs. SwissProt
Match: RPA1_SCHPO (DNA-directed RNA polymerase I subunit rpa1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpa1 PE=1 SV=2)

HSP 1 Score: 55.4546 bits (132), Expect = 1.057e-7
Identity = 34/100 (34.00%), Postives = 50/100 (50.00%), Query Frame = 1 
Query:   40 SGLIKAIKFDVLTGEDIEKISALEINAPTQVTC----SDLGLPNLSLG-------CTTCGSKDRKSCEGHFGAIKFPFTILHPYFMAEIAEILNKICPAC 306
            S  IK++KF +   +D+EKIS  +I  P  +      ++ GL +L+LG       C TC   D + C GHFG I  P    HP F +++  +L   C  C
Sbjct:    8 SSEIKSVKFGIYDVDDVEKISVKQIVNPVLLDNLNHPTNGGLYDLALGPYLKNSVCATC-HLDERYCPGHFGHIVLPIPAYHPLFFSQMYNLLRSTCLYC 106
[Close]
BLAST of Ca_02405 vs. SwissProt
Match: RPOA1_METTW (DNA-directed RNA polymerase subunit A' OS=Methanothermobacter thermoautotrophicus (strain Winter) GN=rpoA1 PE=3 SV=2)

HSP 1 Score: 53.9138 bits (128), Expect = 3.075e-7
Identity = 33/100 (33.00%), Postives = 49/100 (49.00%), Query Frame = 1 
Query:   49 IKAIKFDVLTGEDIEKISALEINAP-----------TQVTCSDLGLPNLSLGCTTCGSKDRKSCEGHFGAIKFPFTILHPYFMAEIAEILNKICPACKSI 315
            I  I F +++ EDI K+S  +I  P            ++    LG+   SL C +CG+K  + C GHFG+I     ++H  F   I +IL+ IC  C  I
Sbjct:    8 ISQINFGLMSPEDIRKMSVAQIVTPDTYDEDGYPIENELMDPRLGVIGSSLRCRSCGAKGGE-CPGHFGSINLARPVIHVGFADTIHKILSSICRKCSRI 106
[Close]
BLAST of Ca_02405 vs. TrEMBL
Match: G7KER5_MEDTR (DNA-directed RNA polymerase OS=Medicago truncatula GN=MTR_5g011000 PE=3 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 3.922e-47
Identity = 101/145 (69.66%), Postives = 105/145 (72.41%), Query Frame = 1 
Query:    1 MDDEDLATEHIVPSGLIKAIKFDVLTGEDI---------------------------------EKISALEINAPTQVTCSDLGLPNLSLGCTTCGSKDRKSCEGHFGAIKFPFTILHPYFMAEIAEILNKICPACKSIRRELRIK 336
            MDDEDLAT H VPS LIKAIKF+VLTGEDI                                 EKISALEINAP QVTCSDLGLPN S GCTTCGSKDRKSCEGHFGAIKFPFTILHPYFMAEIAEIL KICPACKSIR+E+R+K
Sbjct:  118 MDDEDLATVHKVPSALIKAIKFEVLTGEDIVKYILVLISISTLQLFCVYQITVSLAVELGQLHEKISALEINAPGQVTCSDLGLPNSSYGCTTCGSKDRKSCEGHFGAIKFPFTILHPYFMAEIAEILQKICPACKSIRQEIRVK 262
[Close]
BLAST of Ca_02405 vs. TrEMBL
Match: K7LMQ8_SOYBN (DNA-directed RNA polymerase OS=Glycine max PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 4.498e-35
Identity = 75/113 (66.37%), Postives = 85/113 (75.22%), Query Frame = 1 
Query:    7 DEDLATEHIVPSGLIKAIKFDVLTGEDIEKISALEINAPTQVTCSDLGLPNLSLGCTTCGSKDRKSCEGHFGAIKFPFTILHPYFMAEIAEILNKICPACKSIRRELRIKHLV 345
            D+DL   +  PSG+IKAIKFDVLT EDIE I+ LEINA  QVT S LG PN S  C TCGSKD++ CEGHFG IKFP  ILHPYFM+EIA ILNKICP CKSIR + +   L+
Sbjct:    2 DDDLFQRNKTPSGVIKAIKFDVLTEEDIENIAVLEINAAGQVTGSSLGFPNASDECATCGSKDKRFCEGHFGVIKFPTPILHPYFMSEIAHILNKICPVCKSIRHKSKGVRLI 114
[Close]
BLAST of Ca_02405 vs. TrEMBL
Match: K7K551_SOYBN (DNA-directed RNA polymerase OS=Glycine max PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 5.875e-35
Identity = 76/113 (67.26%), Postives = 85/113 (75.22%), Query Frame = 1 
Query:    7 DEDLATEHIVPSGLIKAIKFDVLTGEDIEKISALEINAPTQVTCSDLGLPNLSLGCTTCGSKDRKSCEGHFGAIKFPFTILHPYFMAEIAEILNKICPACKSIRRELRIKHLV 345
            D+DL   +  PS +IKAIKFDVLT EDIE IS LEINA  QVT S+LGLPN S  C TCG+KD+K CEGHFG IKFP  ILHPYFM EIA ILNKICP CKSIR + +   L+
Sbjct:    2 DDDLLQRNKTPSVVIKAIKFDVLTEEDIENISVLEINAAGQVTGSNLGLPNASDECATCGTKDKKFCEGHFGVIKFPTPILHPYFMLEIAHILNKICPVCKSIRHKSKGARLI 114
[Close]
BLAST of Ca_02405 vs. TrEMBL
Match: I1JA29_SOYBN (DNA-directed RNA polymerase OS=Glycine max PE=3 SV=2)

HSP 1 Score: 152.14 bits (383), Expect = 5.875e-35
Identity = 76/113 (67.26%), Postives = 85/113 (75.22%), Query Frame = 1 
Query:    7 DEDLATEHIVPSGLIKAIKFDVLTGEDIEKISALEINAPTQVTCSDLGLPNLSLGCTTCGSKDRKSCEGHFGAIKFPFTILHPYFMAEIAEILNKICPACKSIRRELRIKHLV 345
            D+DL   +  PS +IKAIKFDVLT EDIE IS LEINA  QVT S+LGLPN S  C TCG+KD+K CEGHFG IKFP  ILHPYFM EIA ILNKICP CKSIR + +   L+
Sbjct:    2 DDDLLQRNKTPSVVIKAIKFDVLTEEDIENISVLEINAAGQVTGSNLGLPNASDECATCGTKDKKFCEGHFGVIKFPTPILHPYFMLEIAHILNKICPVCKSIRHKSKGARLI 114
[Close]
BLAST of Ca_02405 vs. TrEMBL
Match: F6HUI3_VITVI (DNA-directed RNA polymerase OS=Vitis vinifera GN=VIT_02s0025g04530 PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 3.564e-32
Identity = 66/110 (60.00%), Postives = 81/110 (73.64%), Query Frame = 1 
Query:    7 DEDLATEHIVPSGLIKAIKFDVLTGEDIEKISALEINAPTQVTCSDLGLPNLSLGCTTCGSKDRKSCEGHFGAIKFPFTILHPYFMAEIAEILNKICPACKSIRRELRIK 336
            D D   E  VPSGL+  IKFDV T ED+EKIS ++I+A  ++T   LG+PN S  C+TCG+KD K CEGHFG IKFPFTILHPYF+ E+ +ILNKICP CKS R+   +K
Sbjct:    2 DNDFLEEQQVPSGLLIGIKFDVSTEEDMEKISVMKIDAVNEITDPKLGVPNPSCQCSTCGAKDTKKCEGHFGVIKFPFTILHPYFLTEVVQILNKICPGCKSTRQGQWVK 111
[Close]
BLAST of Ca_02405 vs. TrEMBL
Match: A5BZZ3_VITVI (DNA-directed RNA polymerase OS=Vitis vinifera GN=VITISV_011232 PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 3.564e-32
Identity = 66/110 (60.00%), Postives = 81/110 (73.64%), Query Frame = 1 
Query:    7 DEDLATEHIVPSGLIKAIKFDVLTGEDIEKISALEINAPTQVTCSDLGLPNLSLGCTTCGSKDRKSCEGHFGAIKFPFTILHPYFMAEIAEILNKICPACKSIRRELRIK 336
            D D   E  VPSGL+  IKFDV T ED+EKIS ++I+A  ++T   LG+PN S  C+TCG+KD K CEGHFG IKFPFTILHPYF+ E+ +ILNKICP CKS R+   +K
Sbjct:    2 DNDFLEEQQVPSGLLIGIKFDVSTEEDMEKISVMKIDAVNEITDPKLGVPNPSCQCSTCGAKDTKKCEGHFGVIKFPFTILHPYFLTEVVQILNKICPGCKSTRQGQWVK 111
[Close]
BLAST of Ca_02405 vs. TrEMBL
Match: M5WEG2_PRUPE (DNA-directed RNA polymerase OS=Prunus persica GN=PRUPE_ppa000278mg PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 4.357e-30
Identity = 66/110 (60.00%), Postives = 80/110 (72.73%), Query Frame = 1 
Query:    7 DEDLATEHIVPSGLIKAIKFDVLTGEDIEKISALEINAPTQVTCSDLGLPNLSLGCTTCGSKDRKSCEGHFGAIKFPFTILHPYFMAEIAEILNKICPACKSIRRELRIK 336
            D +L  E  VPSGLI  I  +V T EDIE IS  +I+A T+VT   LGLPN S  C+TCG++  K CEGHFG IKFP TILHPY+++E+ +ILNKICP CKSIR+ LR K
Sbjct:    2 DNELYEEEGVPSGLITGIHLNVSTQEDIENISVKQIDAVTEVTDPKLGLPNPSFQCSTCGAEKLKCCEGHFGDIKFPCTILHPYYLSEVTQILNKICPGCKSIRQNLRAK 111
[Close]
BLAST of Ca_02405 vs. TrEMBL
Match: B9RC12_RICCO (DNA-directed RNA polymerase OS=Ricinus communis GN=RCOM_1683300 PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 1.402e-28
Identity = 60/103 (58.25%), Postives = 79/103 (76.70%), Query Frame = 1 
Query:   34 VPSGLIKAIKFDVLTGEDIEKISALEINAPTQVTCSDLGLPNLSLGCTTCGSKDRKSCEGHFGAIKFPFTILHPYFMAEIAEILNKICPACKSIRRELRIKHL 342
            +PS L+ AI F V T  + EK+S L I+  ++VT S LGLPN +  C+TCGSKD KSCEGHFG IKFPFTILHPY+++E+  ILN++CP CKSIR+E +++ L
Sbjct:   12 LPSALLTAITFGVSTEAEKEKLSVLTIDTVSEVTDSKLGLPNPTNQCSTCGSKDLKSCEGHFGVIKFPFTILHPYYLSEVVRILNQVCPKCKSIRKESKVRCL 114
[Close]
BLAST of Ca_02405 vs. TrEMBL
Match: D7KU36_ARALL (DNA-directed RNA polymerase OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_893170 PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 2.735e-24
Identity = 55/105 (52.38%), Postives = 71/105 (67.62%), Query Frame = 1 
Query:   10 EDLATEHIVPSGLIKAIKFDVLTGEDIEKISALEINAPTQVTCSDLGLPNLSLGCTTCGSKDRKSCEGHFGAIKFPFTILHPYFMAEIAEILNKICPACKSIRRE 324
            ED   E  VP G + +I F +    D + +S +++ AP QVT S LGLPN    C TCGSKDRK CEGHFG I F ++I++PYF+ EIA +LNKICP CK IR++
Sbjct:    2 EDDCEELQVPVGTLTSIGFSISNNTDRDTMSVIKVEAPNQVTDSRLGLPNPDSICKTCGSKDRKVCEGHFGVINFQYSIINPYFLKEIAALLNKICPGCKYIRKK 106
[Close]
BLAST of Ca_02405 vs. TrEMBL
Match: B9GKP9_POPTR (DNA-directed RNA polymerase OS=Populus trichocarpa GN=NRPD901 PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 3.572e-24
Identity = 61/131 (46.56%), Postives = 76/131 (58.02%), Query Frame = 1 
Query:   13 DLATEHIVPSGLIKAIKFDVLTGEDIEKISALEINAPTQVTCSDLGLPNLSLGCTTCGSKDRKSCEG-----------------------------HFGAIKFPFTILHPYFMAEIAEILNKICPACKSIR 318
            D + E  VPS LI  + F VLT  + EK+S L I+A ++VT   LGLPN S  C+TCGS+D KSCEG                             HFG I FP+TI+HPYF++E+ +ILNKICP CKSIR
Sbjct:    4 DFSEEQQVPSALITGMAFGVLTEAETEKLSVLNIDAVSEVTDPKLGLPNPSSQCSTCGSRDLKSCEGIVDVDLNSADRLASIATGDCANILLSLSGHFGVINFPYTIVHPYFLSEVVQILNKICPGCKSIR 134
[Close]
BLAST of Ca_02405 vs. DB:Swiss
Match: NRPD1_ARATH (DNA-directed RNA polymerase IV subunit 1 OS=Arabidopsis thaliana OX=3702 GN=NRPD1 PE=1 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.748e-33
Identity = 57/105 (54.29%), Postives = 72/105 (68.57%), Query Frame = 1 
Query:   10 EDLATEHIVPSGLIKAIKFDVLTGEDIEKISALEINAPTQVTCSDLGLPNLSLGCTTCGSKDRKSCEGHFGAIKFPFTILHPYFMAEIAEILNKICPACKSIRRE 324
            ED   E  VP G + +I F +    D +K+S LE+ AP QVT S LGLPN    C TCGSKDRK CEGHFG I F ++I++PYF+ E+A +LNKICP CK IR++
Sbjct:    2 EDDCEELQVPVGTLTSIGFSISNNNDRDKMSVLEVEAPNQVTDSRLGLPNPDSVCRTCGSKDRKVCEGHFGVINFAYSIINPYFLKEVAALLNKICPGCKYIRKK 106
[Close]
BLAST of Ca_02405 vs. DB:Swiss
Match: NRPE1_ARATH (DNA-directed RNA polymerase V subunit 1 OS=Arabidopsis thaliana OX=3702 GN=NRPE1 PE=1 SV=1)

HSP 1 Score: 61.2326 bits (147), Expect = 7.976e-11
Identity = 36/94 (38.30%), Postives = 54/94 (57.45%), Query Frame = 1 
Query:   10 EDLATEHIVPSGLIKAIKFDVLTGEDI--EKISALEINAPTQVTCSDLGLPNLSLG-CTTCGSKDRKSCEGHFGAIKFPFTILHPYFMAEIAEI 282
            E+ +T  I+  G I  I F + +  +I  + IS   IN P+Q+T + LGLP L  G C +CG+ +   CEGHFG I+ P  I HP  + E+ ++
Sbjct:    2 EEESTSEIL-DGEIVGITFALASHHEICIQSISESAINHPSQLTNAFLGLP-LEFGKCESCGATEPDKCEGHFGYIQLPVPIYHPAHVNELKQM 93
[Close]
BLAST of Ca_02405 vs. DB:Swiss
Match: RPC1_GIAIN (DNA-directed RNA polymerase III subunit RPC1 OS=Giardia intestinalis OX=5741 GN=RPOA3 PE=3 SV=1)

HSP 1 Score: 58.9214 bits (141), Expect = 5.122e-10
Identity = 35/110 (31.82%), Postives = 51/110 (46.36%), Query Frame = 1 
Query:   22 TEHIVPSGLIKAIKFDVLTGEDIEKISALEINAP-----------TQVTCSDLGLPNLSLGCTTCGSKDRKSCEGHFGAIKFPFTILHPYFMAEIAEILNKICPACKSIR 318
            TEH  P  + K + F VL+   + K+S ++I  P             V    LGL +    C TCG KD K C GHFG I     + HP  + +   +L+ +CP C  ++
Sbjct:   19 TEHRFPKRVEKLV-FSVLSSNALMKLSEVQITTPILYEHYPSPATNGVLDKRLGLSDKVGKCATCG-KDTKMCIGHFGTISLALPVFHPGLINDARTMLSIVCPFCSRVK 126
[Close]
BLAST of Ca_02405 vs. DB:Swiss
Match: RPA1_SCHPO (DNA-directed RNA polymerase I subunit rpa1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rpa1 PE=1 SV=2)

HSP 1 Score: 58.151 bits (139), Expect = 9.072e-10
Identity = 34/104 (32.69%), Postives = 51/104 (49.04%), Query Frame = 1 
Query:   40 SGLIKAIKFDVLTGEDIEKISALEINAPTQVTC----SDLGLPNLSLG-------CTTCGSKDRKSCEGHFGAIKFPFTILHPYFMAEIAEILNKICPACKSIR 318
            S  IK++KF +   +D+EKIS  +I  P  +      ++ GL +L+LG       C TC   D + C GHFG I  P    HP F +++  +L   C  C   +
Sbjct:    8 SSEIKSVKFGIYDVDDVEKISVKQIVNPVLLDNLNHPTNGGLYDLALGPYLKNSVCATC-HLDERYCPGHFGHIVLPIPAYHPLFFSQMYNLLRSTCLYCHHFK 110
[Close]
BLAST of Ca_02405 vs. DB:Swiss
Match: RPOA1_METTW (DNA-directed RNA polymerase subunit A' OS=Methanothermobacter thermautotrophicus (strain Winter) OX=79930 GN=rpoA1 PE=3 SV=2)

HSP 1 Score: 55.0694 bits (131), Expect = 8.906e-9
Identity = 33/100 (33.00%), Postives = 49/100 (49.00%), Query Frame = 1 
Query:   49 IKAIKFDVLTGEDIEKISALEINAP-----------TQVTCSDLGLPNLSLGCTTCGSKDRKSCEGHFGAIKFPFTILHPYFMAEIAEILNKICPACKSI 315
            I  I F +++ EDI K+S  +I  P            ++    LG+   SL C +CG+K  + C GHFG+I     ++H  F   I +IL+ IC  C  I
Sbjct:    8 ISQINFGLMSPEDIRKMSVAQIVTPDTYDEDGYPIENELMDPRLGVIGSSLRCRSCGAKGGE-CPGHFGSINLARPVIHVGFADTIHKILSSICRKCSRI 106
[Close]
BLAST of Ca_02405 vs. DB:Swiss
Match: RPOA1_THEAC (DNA-directed RNA polymerase subunit A' OS=Thermoplasma acidophilum (strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165) OX=273075 GN=rpoA1 PE=3 SV=1)

HSP 1 Score: 53.5286 bits (127), Expect = 3.539e-8
Identity = 35/106 (33.02%), Postives = 52/106 (49.06%), Query Frame = 1 
Query:   40 SGLIKAIKFDVLTGEDIEKISALEINAPTQVTCSDLGLP------NLSLG-------CTTCGSKDRKSCEGHFGAIKFPFTILHPYFMAEIAEILNKICPACKSIR 318
            S  I +IKF +L+ ++I K+S  ++   T  T  D G P      +L +G       C TCG K    C GHFG I+    ++H  F+ EI   L+  C +C  I+
Sbjct:    5 SKRISSIKFALLSPDEIRKLS--QVKVITADTYDDDGYPIEHGLMDLHMGVIEPGLRCATCGGK-VDECPGHFGHIELAMPVVHVGFVKEIKMFLDATCRSCGRIK 107
[Close]
BLAST of Ca_02405 vs. DB:Swiss
Match: RPA1_YEAST (DNA-directed RNA polymerase I subunit RPA190 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=RPA190 PE=1 SV=2)

HSP 1 Score: 52.7582 bits (125), Expect = 6.873e-8
Identity = 34/102 (33.33%), Postives = 49/102 (48.04%), Query Frame = 1 
Query:   49 IKAIKFDVLTGEDIEKISALEINAPTQVTCSDLGLP------NLSLG------CTTCGSKDRKSCEGHFGAIKFPFTILHPYFMAEIAEILNKICPACKSIR 318
            I ++ F +LT ++I  +SA +I  PT     +LG P      +L+LG      C+TCG  D K C GH G I+ P    +P F  ++   L   C  C   R
Sbjct:   11 ITSVDFGILTAKEIRNLSAKQITNPT--VLDNLGHPVSGGLYDLALGAFLRNLCSTCGL-DEKFCPGHQGHIELPVPCYNPLFFNQLYIYLRASCLFCHHFR 109
[Close]
BLAST of Ca_02405 vs. DB:Swiss
Match: RPA1_MOUSE (DNA-directed RNA polymerase I subunit RPA1 OS=Mus musculus OX=10090 GN=Polr1a PE=1 SV=2)

HSP 1 Score: 52.7582 bits (125), Expect = 7.223e-8
Identity = 33/108 (30.56%), Postives = 54/108 (50.00%), Query Frame = 1 
Query:   16 LATEHIVPSGLIKAIKFDVLTGEDIEKISALEINAPTQV----TCSDLGLPNLSLG-------CTTCGSKDRKSCEGHFGAIKFPFTILHPYFMAEIAEILNKICPAC 306
            LA++H  P   ++ I F + + E+++K+S   I  P  V      S  GL +L+LG       C TC  +D  +C GH G I  P T+ +P+   ++  +L   C +C
Sbjct:    2 LASKH-TPWRRLQGISFGMYSAEELKKLSVKSITNPRYVDYLGNPSANGLYDLALGPADSKEVCATC-VQDFNNCSGHLGHIDLPLTVYNPFLFDKLYLLLRGSCLSC 107
[Close]
BLAST of Ca_02405 vs. DB:Swiss
Match: RPOA1_METTH (DNA-directed RNA polymerase subunit A' OS=Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) OX=187420 GN=rpoA1 PE=3 SV=1)

HSP 1 Score: 52.373 bits (124), Expect = 7.755e-8
Identity = 32/100 (32.00%), Postives = 47/100 (47.00%), Query Frame = 1 
Query:   49 IKAIKFDVLTGEDIEKISALEINAPTQ-----------VTCSDLGLPNLSLGCTTCGSKDRKSCEGHFGAIKFPFTILHPYFMAEIAEILNKICPACKSI 315
            I  I F +++ EDI K+S  +I  P             +    LG+ + SL C TCG+K  + C GHFG+I     ++H  F   I +IL   C  C  +
Sbjct:    8 ISQINFGLMSPEDIRKMSVTQIVTPDTYDEDGYPIENGLMDPRLGVIDPSLRCRTCGAKGGE-CPGHFGSINLARPVIHVGFADTIHKILRSTCRKCGRV 106
[Close]
BLAST of Ca_02405 vs. DB:Swiss
Match: RPOA1_THECE (DNA-directed RNA polymerase subunit A' OS=Thermococcus celer OX=2264 GN=rpoA1 PE=3 SV=1)

HSP 1 Score: 52.373 bits (124), Expect = 8.324e-8
Identity = 30/102 (29.41%), Postives = 48/102 (47.06%), Query Frame = 1 
Query:   46 LIKAIKFDVLTGEDIEKISALEINAPTQ-----------VTCSDLGLPNLSLGCTTCGSKDRKSCEGHFGAIKFPFTILHPYFMAEIAEILNKICPACKSIR 318
            +I +I F +L+ ++I K+SA EI  P             +    LG+ +  L C TCG++    C GHFG ++    ++H  F   I  +L   C  C  I+
Sbjct:    7 VIGSIDFGILSPQEIRKMSAAEITVPDTYDEDGYPIEGGLMDKRLGVIDPGLRCETCGAR-AGECPGHFGHVELARPVIHVGFAKTIHRVLESTCRECGRIK 107
The following BLAST results are available for this feature:
BLAST of Ca_02405 vs. SwissProt
Analysis Date: 2013-10-24 (Homology Analysis: Kabuli C.arietinum mRNA vs Swissprot)
Total hits: 5
Match NameE-valueIdentityDescription
NRPD1_ARATH1.201e-2754.29DNA-directed RNA polymerase IV subunit 1 OS=Arabid... [more]
NRPE1_ARATH4.585e-1135.85DNA-directed RNA polymerase V subunit 1 OS=Arabido... [more]
RPC1_GIAIN2.130e-831.82DNA-directed RNA polymerase III subunit RPC1 OS=Gi... [more]
RPA1_SCHPO1.057e-734.00DNA-directed RNA polymerase I subunit rpa1 OS=Schi... [more]
RPOA1_METTW3.075e-733.00DNA-directed RNA polymerase subunit A' OS=Methanot... [more]
back to top
BLAST of Ca_02405 vs. TrEMBL
Analysis Date: 2013-10-24 (Homology Analysis: Kabuli C.arietinum mRNA vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
G7KER5_MEDTR3.922e-4769.66DNA-directed RNA polymerase OS=Medicago truncatula... [more]
K7LMQ8_SOYBN4.498e-3566.37DNA-directed RNA polymerase OS=Glycine max PE=3 SV... [more]
K7K551_SOYBN5.875e-3567.26DNA-directed RNA polymerase OS=Glycine max PE=3 SV... [more]
I1JA29_SOYBN5.875e-3567.26DNA-directed RNA polymerase OS=Glycine max PE=3 SV... [more]
F6HUI3_VITVI3.564e-3260.00DNA-directed RNA polymerase OS=Vitis vinifera GN=V... [more]
A5BZZ3_VITVI3.564e-3260.00DNA-directed RNA polymerase OS=Vitis vinifera GN=V... [more]
M5WEG2_PRUPE4.357e-3060.00DNA-directed RNA polymerase OS=Prunus persica GN=P... [more]
B9RC12_RICCO1.402e-2858.25DNA-directed RNA polymerase OS=Ricinus communis GN... [more]
D7KU36_ARALL2.735e-2452.38DNA-directed RNA polymerase OS=Arabidopsis lyrata ... [more]
B9GKP9_POPTR3.572e-2446.56DNA-directed RNA polymerase OS=Populus trichocarpa... [more]

Pages

back to top
BLAST of Ca_02405 vs. DB:Swiss
Analysis Date: 2019-05-21 (BLAST: C. arietinum CDC Frontier (kabuli), Swissprot)
Total hits: 10
Match NameE-valueIdentityDescription
NRPD1_ARATH1.748e-3354.29DNA-directed RNA polymerase IV subunit 1 OS=Arabid... [more]
NRPE1_ARATH7.976e-1138.30DNA-directed RNA polymerase V subunit 1 OS=Arabido... [more]
RPC1_GIAIN5.122e-1031.82DNA-directed RNA polymerase III subunit RPC1 OS=Gi... [more]
RPA1_SCHPO9.072e-1032.69DNA-directed RNA polymerase I subunit rpa1 OS=Schi... [more]
RPOA1_METTW8.906e-933.00DNA-directed RNA polymerase subunit A' OS=Methanot... [more]
RPOA1_THEAC3.539e-833.02DNA-directed RNA polymerase subunit A' OS=Thermopl... [more]
RPA1_YEAST6.873e-833.33DNA-directed RNA polymerase I subunit RPA190 OS=Sa... [more]
RPA1_MOUSE7.223e-830.56DNA-directed RNA polymerase I subunit RPA1 OS=Mus ... [more]
RPOA1_METTH7.755e-832.00DNA-directed RNA polymerase subunit A' OS=Methanot... [more]
RPOA1_THECE8.324e-829.41DNA-directed RNA polymerase subunit A' OS=Thermoco... [more]
back to top
InterPro
Analysis Name: InterProScan analysis for kabuli C. arietinum unigenes
Date Performed: 2013-10-24
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007080RNA polymerase Rpb1, domain 1PFAMPF04997RNA_pol_Rpb1_1coord: 17..108
score: 3.1
NoneNo IPR availablePANTHERPTHR19376FAMILY NOT NAMEDcoord: 4..112
score: 8.7
NoneNo IPR availablePANTHERPTHR19376:SF10DNA-DIRECTED RNA POLYMERASEcoord: 4..112
score: 8.7
NoneNo IPR availableSUPERFAMILY64484beta and beta-prime subunits of DNA dependent RNA-polymerasecoord: 12..114
score: 1.8

Sequences
The following sequences are available for this feature:

mRNA sequence

>Ca_02405_v1.0_kabuli ID=Ca_02405_v1.0_kabuli; Name=Ca_02405; organism=Cicer arietinum; type=mRNA; length=348bp
ATGGATGATGAAGACCTCGCTACAGAGCACATAGTGCCATCTGGTCTCAT
AAAGGCGATAAAGTTTGATGTTTTAACGGGAGAAGATATAGAGAAGATTT
CTGCTTTAGAGATAAATGCACCGACACAGGTCACTTGTTCTGATTTGGGA
CTTCCAAATTTGTCTTTGGGGTGCACGACATGTGGTTCAAAAGATAGAAA
GTCCTGTGAAGGTCATTTTGGAGCAATCAAATTTCCTTTTACCATATTAC
ATCCATACTTCATGGCAGAGATTGCGGAAATCTTGAACAAGATTTGCCCT
GCATGTAAATCTATTCGACGTGAATTACGGATCAAGCATCTTGTATAG
back to top

protein sequence of Ca_02405_v1.0_kabuli

>Ca_02405_v1.0_kabuli ID=Ca_02405_v1.0_kabuli; Name=Ca_02405_v1.0_kabuli; organism=Cicer arietinum; type=polypeptide; length=115bp
MDDEDLATEHIVPSGLIKAIKFDVLTGEDIEKISALEINAPTQVTCSDLG
LPNLSLGCTTCGSKDRKSCEGHFGAIKFPFTILHPYFMAEIAEILNKICP
ACKSIRRELRIKHLV
back to top

mRNA from alignment at Ca8:1970380..1971206+

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ca_02405_v1.0_kabuli ID=Ca_02405_v1.0_kabuli; Name=Ca_02405; organism=Cicer arietinum; type=mRNA; length=827bp; location=Sequence derived from: Ca8:1970380..1971206+ (Cicer arietinum
ATGGATGATGAAGACCTCGCTACAGAGCACATAGTGCCATCTGGTCTCAT
AAAGGCGATAAAGTTTGATGTTTTAACGGGAGAAGATATAGTTAAGTATA
TTCTTGTTCTTATATCTATATAAGCTCTGTAGTTATTCGGTGTGTATCAG
TTTATTTAAAGTTGGTTTAGCAGTGGAATTATGTCAAGTGCATGAACTTA
CATGTAATGTAACATGGAAATACGGAGAGGAGGGTGGGTTCAAACTTGAA
AGCACATTCTTGTTTGGGTTACCTTTACCCTTCGAAGGAAGAAAACCCTA
TTTTGTGGAATGGATTATCAATCATAAATCTCTTCTGATTGCCATGTAAT
TTATTAATCACATATTTATGTTATTTAGTTTTACATTTGCAGGAGAAGAT
TTCTGCTTTAGAGATAAATGCACCGACACAGGTCACTTGTTCTGATTTGG
GACTTCCAAATTTGTCTTTGGGGTGCACGACATGTGGTTCAAAAGATAGA
AAGTCCTGTGAAGGTGTGGATAGACATACTATATAGAAAATATGGTTGGA
GATTTGTGGTTTGATTATTTAGTATGTATTAGATGCTGATAGAGTAATCT
GTTATTTCAGGTCATTTTGGAGCAATCAAATTTCCTTTTACCATATTACA
TCCATACTTCATGGCAGAGATTGCGGAAATCTTGAACAAGATTTGCCCTG
CATGTAAATCTATTCGACGTGAATTACGGATCAAGGTCAGCTGTCTTTTG
CTTCTAGCAACATCAATACAGATGATCTGTTTTTGTTATAACACTACCTT
AGTTCTGGACCGCAGCATCTTGTATAG
back to top

Coding sequence (CDS) from alignment at Ca8:1970380..1971206+

>Ca_02405_v1.0_kabuli ID=Ca_02405_v1.0_kabuli; Name=Ca_02405; organism=Cicer arietinum; type=CDS; length=348bp; location=Sequence derived from: Ca8:1970380..1971206+ (Cicer arietinum
ATGGATGATGAAGACCTCGCTACAGAGCACATAGTGCCATCTGGTCTCAT
AAAGGCGATAAAGTTTGATGTTTTAACGGGAGAAGATATAGAGAAGATTT
CTGCTTTAGAGATAAATGCACCGACACAGGTCACTTGTTCTGATTTGGGA
CTTCCAAATTTGTCTTTGGGGTGCACGACATGTGGTTCAAAAGATAGAAA
GTCCTGTGAAGGTCATTTTGGAGCAATCAAATTTCCTTTTACCATATTAC
ATCCATACTTCATGGCAGAGATTGCGGAAATCTTGAACAAGATTTGCCCT
GCATGTAAATCTATTCGACGTGAATTACGGATCAAGCATCTTGTATAG
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR007080RNA_pol_Rpb1_1
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0003899DNA-directed 5'-3' RNA polymerase activity