Ca_17870, Ca_17870_v1.0_kabuli (mRNA) Cicer arietinum
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of Ca_17870 vs. SwissProt
Match: AB8B_ARATH (Putative ABC transporter B family member 8 OS=Arabidopsis thaliana GN=ABCB8 PE=5 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 1.602e-11 Identity = 37/65 (56.92%), Postives = 44/65 (67.69%), Query Frame = 1 Query: 1 MLMGSLGAIGDGMSTNVLLLFASRIM-XXXXXXXXXXXXXXXXEVEKCSLYFVYLGLAAMVVAFM 192 M++GS+GAIGDGMSTNV L+F SRIM E++KCSLYFVYLGLA + VAFM Sbjct: 33 MVLGSVGAIGDGMSTNVSLVFVSRIMNTLGYSQHNPSSTNFKEEIQKCSLYFVYLGLAILGVAFM 97
BLAST of Ca_17870 vs. TrEMBL
Match: I1MM11_SOYBN (Uncharacterized protein OS=Glycine max PE=3 SV=2) HSP 1 Score: 81.6481 bits (200), Expect = 9.785e-14 Identity = 46/65 (70.77%), Postives = 48/65 (73.85%), Query Frame = 1 Query: 1 MLMGSLGAIGDGMSTNVLLLFASRIM-XXXXXXXXXXXXXXXXEVEKCSLYFVYLGLAAMVVAFM 192 MLMG++GAIGDGMSTNVLLLFASRIM EVEKCSLYFVYLGLAAMVVAFM Sbjct: 39 MLMGAVGAIGDGMSTNVLLLFASRIMNSLGYSNNLQSTKTYMAEVEKCSLYFVYLGLAAMVVAFM 103
BLAST of Ca_17870 vs. TrEMBL
Match: I1J4J3_SOYBN (Uncharacterized protein OS=Glycine max PE=3 SV=2) HSP 1 Score: 81.6481 bits (200), Expect = 9.785e-14 Identity = 46/65 (70.77%), Postives = 48/65 (73.85%), Query Frame = 1 Query: 1 MLMGSLGAIGDGMSTNVLLLFASRIM-XXXXXXXXXXXXXXXXEVEKCSLYFVYLGLAAMVVAFM 192 MLMG++GAIGDGMSTNVLLLFASRIM EVEKCSLYFVYLGLAAMVVAFM Sbjct: 39 MLMGAVGAIGDGMSTNVLLLFASRIMNSLGYSNNLQSTKTYMAEVEKCSLYFVYLGLAAMVVAFM 103
BLAST of Ca_17870 vs. TrEMBL
Match: B9RKG7_RICCO (Multidrug resistance protein 1, 2, putative OS=Ricinus communis GN=RCOM_1049340 PE=3 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 3.148e-12 Identity = 42/65 (64.62%), Postives = 46/65 (70.77%), Query Frame = 1 Query: 1 MLMGSLGAIGDGMSTNVLLLFASRIM-XXXXXXXXXXXXXXXXEVEKCSLYFVYLGLAAMVVAFM 192 MLMG++GAIGDGMSTN+LL+FAS IM EVEKCSLYFVYLGLA MVVAFM Sbjct: 34 MLMGTVGAIGDGMSTNILLVFASHIMNSLGYGKTQQNQGNFMVEVEKCSLYFVYLGLAVMVVAFM 98
BLAST of Ca_17870 vs. TrEMBL
Match: D7LP84_ARALL (Predicted protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_664934 PE=4 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 1.323e-10 Identity = 38/66 (57.58%), Postives = 46/66 (69.70%), Query Frame = 1 Query: 1 MLMGSLGAIGDGMSTNVLLLFASRIM-XXXXXXXXXXXXXXXXEVEKCSLYFVYLGLAAMVVAFMG 195 M++G++GAIGDGMSTNV L+FASRIM E++KCSLYFVYLGLA + VAFMG Sbjct: 33 MVLGTVGAIGDGMSTNVALVFASRIMNSLGYGQHNPSSTTFKEEIQKCSLYFVYLGLAILGVAFMG 98
BLAST of Ca_17870 vs. TrEMBL
Match: F6HGL1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_11s0016g03160 PE=3 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 3.848e-10 Identity = 38/65 (58.46%), Postives = 43/65 (66.15%), Query Frame = 1 Query: 1 MLMGSLGAIGDGMSTNVLLLFASRIMXXXXXXXXXXXXXXXX-EVEKCSLYFVYLGLAAMVVAFM 192 M +G++GAIGDGMSTN LL+F SR+M EVEKCSLYFVYL LA MVVAFM Sbjct: 24 MFLGTVGAIGDGMSTNCLLVFVSRLMNSLGYGNTQKNHGNFMDEVEKCSLYFVYLALAVMVVAFM 88
BLAST of Ca_17870 vs. TrEMBL
Match: M4E9G9_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis GN=Bra025425 PE=3 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 8.572e-10 Identity = 37/64 (57.81%), Postives = 45/64 (70.31%), Query Frame = 1 Query: 1 MLMGSLGAIGDGMSTNVLLLFASRIMXXXXXXXXXXXXXXXXEVEKCSLYFVYLGLAAMVVAFM 192 M++G++GAIGDGMSTNV L+FAS+IM EV+KCSLYFVYLGLA + VAFM Sbjct: 33 MVLGTVGAIGDGMSTNVALVFASKIM-NSLGYGQNNHHTFKDEVQKCSLYFVYLGLAILGVAFM 95
BLAST of Ca_17870 vs. TrEMBL
Match: M5VSH2_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa023915mg PE=3 SV=1) HSP 1 Score: 64.6994 bits (156), Expect = 1.238e-8 Identity = 35/68 (51.47%), Postives = 44/68 (64.71%), Query Frame = 1 Query: 1 MLMGSLGAIGDGMSTNVLLLFASRIM----XXXXXXXXXXXXXXXXEVEKCSLYFVYLGLAAMVVAFM 192 M++G++GA+GDGMSTN LL+F SR+M EVEKCSL FVYLGLA M+VAF+ Sbjct: 46 MVLGTVGAVGDGMSTNCLLVFVSRLMNNLGYGQSQQNNNHGIHWMHEVEKCSLDFVYLGLAVMLVAFL 113
BLAST of Ca_17870 vs. TrEMBL
Match: K4BIP1_SOLLC (Uncharacterized protein OS=Solanum lycopersicum GN=Solyc03g093650.2 PE=3 SV=1) HSP 1 Score: 61.2326 bits (147), Expect = 1.369e-7 Identity = 32/65 (49.23%), Postives = 41/65 (63.08%), Query Frame = 1 Query: 1 MLMGSLGAIGDGMSTNVLLLFASRIMXXXXXXXXXXXXXXXXE-VEKCSLYFVYLGLAAMVVAFM 192 M +G++GAIGDG+STN LL++ S++ E +EKCSLYFV LGL MVVAFM Sbjct: 32 MFLGTIGAIGDGISTNCLLVYVSQLFNSLGYGKTQQNDHNFMEQIEKCSLYFVLLGLGVMVVAFM 96
BLAST of Ca_17870 vs. TrEMBL
Match: B9ILT9_POPTR (Multidrug/pheromone exporter, MDR family, ABC transporter family (Fragment) OS=Populus trichocarpa GN=POPTRDRAFT_262055 PE=3 SV=1) HSP 1 Score: 59.3066 bits (142), Expect = 5.201e-7 Identity = 35/64 (54.69%), Postives = 41/64 (64.06%), Query Frame = 1 Query: 1 MLMGSLGAIGDGMSTNVLLLFASRIMXXXXXXXXXXXXXXXXEVEKCSLYFVYLGLAAMVVAFM 192 ML+G++GAIGDGMSTN LL+FASRIM VE + FVYLGLA MV+AFM Sbjct: 17 MLLGTVGAIGDGMSTNCLLVFASRIMNSLGYGQTRQDNYNFM-VEVQKVNFVYLGLAVMVMAFM 79
BLAST of Ca_17870 vs. TrEMBL
Match: M0TAD0_MUSAM (Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=3 SV=1) HSP 1 Score: 58.9214 bits (141), Expect = 6.792e-7 Identity = 34/65 (52.31%), Postives = 39/65 (60.00%), Query Frame = 1 Query: 1 MLMGSLGAIGDGMSTNVLLLFASRIM-XXXXXXXXXXXXXXXXEVEKCSLYFVYLGLAAMVVAFM 192 ML+G++GAIGDG S N LLLFAS +M VEK LYFVYLG A +VVAFM Sbjct: 1 MLLGTIGAIGDGCSINCLLLFASNVMNSLGYGKAQDNHPDFMHNVEKYCLYFVYLGSAVLVVAFM 65
BLAST of Ca_17870 vs. DB:Swiss
Match: AB8B_ARATH (Putative ABC transporter B family member 8 OS=Arabidopsis thaliana OX=3702 GN=ABCB8 PE=5 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 6.771e-14 Identity = 42/65 (64.62%), Postives = 52/65 (80.00%), Query Frame = 1 Query: 1 MLMGSLGAIGDGMSTNVLLLFASRIMXXXXXXXXX-XXXXXXXEVEKCSLYFVYLGLAAMVVAFM 192 M++GS+GAIGDGMSTNV L+F SRIMN+LG +N +S E++KCSLYFVYLGLA + VAFM Sbjct: 33 MVLGSVGAIGDGMSTNVSLVFVSRIMNTLGYSQHNPSSTNFKEEIQKCSLYFVYLGLAILGVAFM 97 The following BLAST results are available for this feature:
BLAST of Ca_17870 vs. SwissProt
Analysis Date: 2013-10-24 (Homology Analysis: Kabuli C.arietinum mRNA vs Swissprot) Total hits: 1
BLAST of Ca_17870 vs. TrEMBL
Analysis Date: 2013-10-24 (Homology Analysis: Kabuli C.arietinum mRNA vs TrEMBL) Total hits: 10
BLAST of Ca_17870 vs. DB:Swiss
Analysis Date: 2019-05-21 (BLAST: C. arietinum CDC Frontier (kabuli), Swissprot) Total hits: 1
InterPro
Analysis Name: InterProScan analysis for kabuli C. arietinum unigenes
Date Performed: 2013-10-24
Sequences
The
following sequences are available for this feature:
mRNA sequence >Ca_17870_v1.0_kabuli ID=Ca_17870_v1.0_kabuli; Name=Ca_17870; organism=Cicer arietinum; type=mRNA; length=204bpback to top protein sequence of Ca_17870_v1.0_kabuli >Ca_17870_v1.0_kabuli ID=Ca_17870_v1.0_kabuli; Name=Ca_17870_v1.0_kabuli; organism=Cicer arietinum; type=polypeptide; length=67bpback to top mRNA from alignment at Ca8:15734449..15734776- Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below.>Ca_17870_v1.0_kabuli ID=Ca_17870_v1.0_kabuli; Name=Ca_17870; organism=Cicer arietinum; type=mRNA; length=328bp; location=Sequence derived from: Ca8:15734449..15734776- (Cicer arietinumback to top Coding sequence (CDS) from alignment at Ca8:15734449..15734776- >Ca_17870_v1.0_kabuli ID=Ca_17870_v1.0_kabuli; Name=Ca_17870; organism=Cicer arietinum; type=CDS; length=204bp; location=Sequence derived from: Ca8:15734449..15734776- (Cicer arietinumback to top |