Ca_17870, Ca_17870_v1.0_kabuli (mRNA) Cicer arietinum

Transcript Overview
NameCa_17870
Unique NameCa_17870_v1.0_kabuli
TypemRNA
OrganismCicer arietinum (chickpea)
Sequence length204
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Ca8chromosomeCa8:15734449..15734776 -Cicer arietinum CDC Frontier genome v1.0n/a
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
capsR679Pisum sativum Cameor genome v1aPisum sativum
capsR682Pisum sativum Cameor genome v1aPisum sativum
capsR709Pisum sativum Cameor genome v1aPisum sativum
cavuR660Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
cavuR666Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
cavuR679Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
cavuR697Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
capvR770Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
capvR783Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
capvR796Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
capvR807Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
caccR1063Cajanus cajan Asha genome v1.0Cajanus cajan
caccR1082Cajanus cajan Asha genome v1.0Cajanus cajan
cazwsR593Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
cazwsR615Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
cavrvR671Vigna radiata cv. VC1973A genome v6.0Vigna radiata
cavrvR680Vigna radiata cv. VC1973A genome v6.0Vigna radiata
cavrvR694Vigna radiata cv. VC1973A genome v6.0Vigna radiata
cavssR735Vicia sativa cv. Studenica genome v1.0Vicia sativa
cavssR744Vicia sativa cv. Studenica genome v1.0Vicia sativa
cavssR746Vicia sativa cv. Studenica genome v1.0Vicia sativa
cavuaR626Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
cavuaR637Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
cavuaR644Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
cavuaR657Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
cacanR340Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
cacanR348Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
cacarR616Cicer arietinum
cacarR630Cicer arietinum
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Ca_17870-CDS1Ca_17870-CDS1Cicer arietinumCDS
Ca_17870-CDS2Ca_17870-CDS2Cicer arietinumCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Ca_17870_v1.0_kabuliCa_17870_v1.0_kabuliCicer arietinumpolypeptide


Homology
BLAST of Ca_17870 vs. SwissProt
Match: AB8B_ARATH (Putative ABC transporter B family member 8 OS=Arabidopsis thaliana GN=ABCB8 PE=5 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.602e-11
Identity = 37/65 (56.92%), Postives = 44/65 (67.69%), Query Frame = 1
Query:    1 MLMGSLGAIGDGMSTNVLLLFASRIM-XXXXXXXXXXXXXXXXEVEKCSLYFVYLGLAAMVVAFM 192
            M++GS+GAIGDGMSTNV L+F SRIM                 E++KCSLYFVYLGLA + VAFM
Sbjct:   33 MVLGSVGAIGDGMSTNVSLVFVSRIMNTLGYSQHNPSSTNFKEEIQKCSLYFVYLGLAILGVAFM 97          
BLAST of Ca_17870 vs. TrEMBL
Match: I1MM11_SOYBN (Uncharacterized protein OS=Glycine max PE=3 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 9.785e-14
Identity = 46/65 (70.77%), Postives = 48/65 (73.85%), Query Frame = 1
Query:    1 MLMGSLGAIGDGMSTNVLLLFASRIM-XXXXXXXXXXXXXXXXEVEKCSLYFVYLGLAAMVVAFM 192
            MLMG++GAIGDGMSTNVLLLFASRIM                 EVEKCSLYFVYLGLAAMVVAFM
Sbjct:   39 MLMGAVGAIGDGMSTNVLLLFASRIMNSLGYSNNLQSTKTYMAEVEKCSLYFVYLGLAAMVVAFM 103          
BLAST of Ca_17870 vs. TrEMBL
Match: I1J4J3_SOYBN (Uncharacterized protein OS=Glycine max PE=3 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 9.785e-14
Identity = 46/65 (70.77%), Postives = 48/65 (73.85%), Query Frame = 1
Query:    1 MLMGSLGAIGDGMSTNVLLLFASRIM-XXXXXXXXXXXXXXXXEVEKCSLYFVYLGLAAMVVAFM 192
            MLMG++GAIGDGMSTNVLLLFASRIM                 EVEKCSLYFVYLGLAAMVVAFM
Sbjct:   39 MLMGAVGAIGDGMSTNVLLLFASRIMNSLGYSNNLQSTKTYMAEVEKCSLYFVYLGLAAMVVAFM 103          
BLAST of Ca_17870 vs. TrEMBL
Match: B9RKG7_RICCO (Multidrug resistance protein 1, 2, putative OS=Ricinus communis GN=RCOM_1049340 PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 3.148e-12
Identity = 42/65 (64.62%), Postives = 46/65 (70.77%), Query Frame = 1
Query:    1 MLMGSLGAIGDGMSTNVLLLFASRIM-XXXXXXXXXXXXXXXXEVEKCSLYFVYLGLAAMVVAFM 192
            MLMG++GAIGDGMSTN+LL+FAS IM                 EVEKCSLYFVYLGLA MVVAFM
Sbjct:   34 MLMGTVGAIGDGMSTNILLVFASHIMNSLGYGKTQQNQGNFMVEVEKCSLYFVYLGLAVMVVAFM 98          
BLAST of Ca_17870 vs. TrEMBL
Match: D7LP84_ARALL (Predicted protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_664934 PE=4 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.323e-10
Identity = 38/66 (57.58%), Postives = 46/66 (69.70%), Query Frame = 1
Query:    1 MLMGSLGAIGDGMSTNVLLLFASRIM-XXXXXXXXXXXXXXXXEVEKCSLYFVYLGLAAMVVAFMG 195
            M++G++GAIGDGMSTNV L+FASRIM                 E++KCSLYFVYLGLA + VAFMG
Sbjct:   33 MVLGTVGAIGDGMSTNVALVFASRIMNSLGYGQHNPSSTTFKEEIQKCSLYFVYLGLAILGVAFMG 98          
BLAST of Ca_17870 vs. TrEMBL
Match: F6HGL1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_11s0016g03160 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 3.848e-10
Identity = 38/65 (58.46%), Postives = 43/65 (66.15%), Query Frame = 1
Query:    1 MLMGSLGAIGDGMSTNVLLLFASRIMXXXXXXXXXXXXXXXX-EVEKCSLYFVYLGLAAMVVAFM 192
            M +G++GAIGDGMSTN LL+F SR+M                 EVEKCSLYFVYL LA MVVAFM
Sbjct:   24 MFLGTVGAIGDGMSTNCLLVFVSRLMNSLGYGNTQKNHGNFMDEVEKCSLYFVYLALAVMVVAFM 88          
BLAST of Ca_17870 vs. TrEMBL
Match: M4E9G9_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis GN=Bra025425 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 8.572e-10
Identity = 37/64 (57.81%), Postives = 45/64 (70.31%), Query Frame = 1
Query:    1 MLMGSLGAIGDGMSTNVLLLFASRIMXXXXXXXXXXXXXXXXEVEKCSLYFVYLGLAAMVVAFM 192
            M++G++GAIGDGMSTNV L+FAS+IM                EV+KCSLYFVYLGLA + VAFM
Sbjct:   33 MVLGTVGAIGDGMSTNVALVFASKIM-NSLGYGQNNHHTFKDEVQKCSLYFVYLGLAILGVAFM 95          
BLAST of Ca_17870 vs. TrEMBL
Match: M5VSH2_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa023915mg PE=3 SV=1)

HSP 1 Score: 64.6994 bits (156), Expect = 1.238e-8
Identity = 35/68 (51.47%), Postives = 44/68 (64.71%), Query Frame = 1
Query:    1 MLMGSLGAIGDGMSTNVLLLFASRIM----XXXXXXXXXXXXXXXXEVEKCSLYFVYLGLAAMVVAFM 192
            M++G++GA+GDGMSTN LL+F SR+M                    EVEKCSL FVYLGLA M+VAF+
Sbjct:   46 MVLGTVGAVGDGMSTNCLLVFVSRLMNNLGYGQSQQNNNHGIHWMHEVEKCSLDFVYLGLAVMLVAFL 113          
BLAST of Ca_17870 vs. TrEMBL
Match: K4BIP1_SOLLC (Uncharacterized protein OS=Solanum lycopersicum GN=Solyc03g093650.2 PE=3 SV=1)

HSP 1 Score: 61.2326 bits (147), Expect = 1.369e-7
Identity = 32/65 (49.23%), Postives = 41/65 (63.08%), Query Frame = 1
Query:    1 MLMGSLGAIGDGMSTNVLLLFASRIMXXXXXXXXXXXXXXXXE-VEKCSLYFVYLGLAAMVVAFM 192
            M +G++GAIGDG+STN LL++ S++                 E +EKCSLYFV LGL  MVVAFM
Sbjct:   32 MFLGTIGAIGDGISTNCLLVYVSQLFNSLGYGKTQQNDHNFMEQIEKCSLYFVLLGLGVMVVAFM 96          
BLAST of Ca_17870 vs. TrEMBL
Match: B9ILT9_POPTR (Multidrug/pheromone exporter, MDR family, ABC transporter family (Fragment) OS=Populus trichocarpa GN=POPTRDRAFT_262055 PE=3 SV=1)

HSP 1 Score: 59.3066 bits (142), Expect = 5.201e-7
Identity = 35/64 (54.69%), Postives = 41/64 (64.06%), Query Frame = 1
Query:    1 MLMGSLGAIGDGMSTNVLLLFASRIMXXXXXXXXXXXXXXXXEVEKCSLYFVYLGLAAMVVAFM 192
            ML+G++GAIGDGMSTN LL+FASRIM                 VE   + FVYLGLA MV+AFM
Sbjct:   17 MLLGTVGAIGDGMSTNCLLVFASRIMNSLGYGQTRQDNYNFM-VEVQKVNFVYLGLAVMVMAFM 79          
BLAST of Ca_17870 vs. TrEMBL
Match: M0TAD0_MUSAM (Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=3 SV=1)

HSP 1 Score: 58.9214 bits (141), Expect = 6.792e-7
Identity = 34/65 (52.31%), Postives = 39/65 (60.00%), Query Frame = 1
Query:    1 MLMGSLGAIGDGMSTNVLLLFASRIM-XXXXXXXXXXXXXXXXEVEKCSLYFVYLGLAAMVVAFM 192
            ML+G++GAIGDG S N LLLFAS +M                  VEK  LYFVYLG A +VVAFM
Sbjct:    1 MLLGTIGAIGDGCSINCLLLFASNVMNSLGYGKAQDNHPDFMHNVEKYCLYFVYLGSAVLVVAFM 65          
BLAST of Ca_17870 vs. DB:Swiss
Match: AB8B_ARATH (Putative ABC transporter B family member 8 OS=Arabidopsis thaliana OX=3702 GN=ABCB8 PE=5 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.771e-14
Identity = 42/65 (64.62%), Postives = 52/65 (80.00%), Query Frame = 1
Query:    1 MLMGSLGAIGDGMSTNVLLLFASRIMXXXXXXXXX-XXXXXXXEVEKCSLYFVYLGLAAMVVAFM 192
            M++GS+GAIGDGMSTNV L+F SRIMN+LG   +N +S     E++KCSLYFVYLGLA + VAFM
Sbjct:   33 MVLGSVGAIGDGMSTNVSLVFVSRIMNTLGYSQHNPSSTNFKEEIQKCSLYFVYLGLAILGVAFM 97          
The following BLAST results are available for this feature:
BLAST of Ca_17870 vs. SwissProt
Analysis Date: 2013-10-24 (Homology Analysis: Kabuli C.arietinum mRNA vs Swissprot)
Total hits: 1
Match NameE-valueIdentityDescription
AB8B_ARATH1.602e-1156.92Putative ABC transporter B family member 8 OS=Arab... [more]
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BLAST of Ca_17870 vs. TrEMBL
Analysis Date: 2013-10-24 (Homology Analysis: Kabuli C.arietinum mRNA vs TrEMBL)
Total hits: 10
Match NameE-valueIdentityDescription
I1MM11_SOYBN9.785e-1470.77Uncharacterized protein OS=Glycine max PE=3 SV=2[more]
I1J4J3_SOYBN9.785e-1470.77Uncharacterized protein OS=Glycine max PE=3 SV=2[more]
B9RKG7_RICCO3.148e-1264.62Multidrug resistance protein 1, 2, putative OS=Ric... [more]
D7LP84_ARALL1.323e-1057.58Predicted protein OS=Arabidopsis lyrata subsp. lyr... [more]
F6HGL1_VITVI3.848e-1058.46Putative uncharacterized protein OS=Vitis vinifera... [more]
M4E9G9_BRARP8.572e-1057.81Uncharacterized protein OS=Brassica rapa subsp. pe... [more]
M5VSH2_PRUPE1.238e-851.47Uncharacterized protein OS=Prunus persica GN=PRUPE... [more]
K4BIP1_SOLLC1.369e-749.23Uncharacterized protein OS=Solanum lycopersicum GN... [more]
B9ILT9_POPTR5.201e-754.69Multidrug/pheromone exporter, MDR family, ABC tran... [more]
M0TAD0_MUSAM6.792e-752.31Uncharacterized protein OS=Musa acuminata subsp. m... [more]
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BLAST of Ca_17870 vs. DB:Swiss
Analysis Date: 2019-05-21 (BLAST: C. arietinum CDC Frontier (kabuli), Swissprot)
Total hits: 1
Match NameE-valueIdentityDescription
AB8B_ARATH6.771e-1464.62Putative ABC transporter B family member 8 OS=Arab... [more]
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InterPro
Analysis Name: InterProScan analysis for kabuli C. arietinum unigenes
Date Performed: 2013-10-24
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSEGsegsegcoord: 27..42
score
NoneNo IPR availableSEGsegsegcoord: 16..30
score

Sequences
The following sequences are available for this feature:

mRNA sequence

>Ca_17870_v1.0_kabuli ID=Ca_17870_v1.0_kabuli; Name=Ca_17870; organism=Cicer arietinum; type=mRNA; length=204bp
ATGTTGATGGGTTCTTTGGGAGCAATTGGAGATGGAATGTCAACAAATGT
TTTGCTTCTTTTTGCAAGTCGTATTATGAACAGCTTAGGTAATAGGAACA
ACAACAATAGTGACACTTCCATGTCCGAGGTTGAAAAGTGCAGCTTATAT
TTTGTCTACTTGGGATTGGCAGCCATGGTGGTGGCTTTCATGGGTATAAT
CTAA
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protein sequence of Ca_17870_v1.0_kabuli

>Ca_17870_v1.0_kabuli ID=Ca_17870_v1.0_kabuli; Name=Ca_17870_v1.0_kabuli; organism=Cicer arietinum; type=polypeptide; length=67bp
MLMGSLGAIGDGMSTNVLLLFASRIMNSLGNRNNNNSDTSMSEVEKCSLY
FVYLGLAAMVVAFMGII
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mRNA from alignment at Ca8:15734449..15734776-

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ca_17870_v1.0_kabuli ID=Ca_17870_v1.0_kabuli; Name=Ca_17870; organism=Cicer arietinum; type=mRNA; length=328bp; location=Sequence derived from: Ca8:15734449..15734776- (Cicer arietinum
ATGTTGATGGGTTCTTTGGGAGCAATTGGAGATGGAATGTCAACAAATGT TTTGCTTCTTTTTGCAAGTCGTATTATGAACAGCTTAGGTAATAGGAACA ACAACAATAGTGACACTTCCATGTCCGAGGTTGAAAAGGTAGTTTTTTTA GTCAACTTAGTTTGACTAATTTATTTTTTGGTTTTTTTTACATGAAATCT ACAAATTCAATTTTTAGTTCTTCATCTAACTAATTTTATTTTTTTTGGTT TATTGTTTACAGTGCAGCTTATATTTTGTCTACTTGGGATTGGCAGCCAT GGTGGTGGCTTTCATGGGTATAATCTAA
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Coding sequence (CDS) from alignment at Ca8:15734449..15734776-

>Ca_17870_v1.0_kabuli ID=Ca_17870_v1.0_kabuli; Name=Ca_17870; organism=Cicer arietinum; type=CDS; length=204bp; location=Sequence derived from: Ca8:15734449..15734776- (Cicer arietinum
ATGTTGATGGGTTCTTTGGGAGCAATTGGAGATGGAATGTCAACAAATGT
TTTGCTTCTTTTTGCAAGTCGTATTATGAACAGCTTAGGTAATAGGAACA
ACAACAATAGTGACACTTCCATGTCCGAGGTTGAAAAGTGCAGCTTATAT
TTTGTCTACTTGGGATTGGCAGCCATGGTGGTGGCTTTCATGGGTATAAT
CTAA
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