Ca_18036.1, Ca_18036.1_ICC4958_v2 (mRNA) Cicer arietinum

Transcript Overview
NameCa_18036.1
Unique NameCa_18036.1_ICC4958_v2
TypemRNA
OrganismCicer arietinum (chickpea)
Sequence length2499
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Ca_LG_6supercontigCa_LG_6:38601892..38604390 +Cicer arietinum ICC 4958 genome v2n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Cicer arietinum ICC 4958 genome v22015-08-11
InterProScan: C. arietinum ICC 4958, v2.0 (desi)2019-05-21
BLAST: C. arietinum ICC 4958 v2.0 (desi) Swissprot2019-05-21
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
caipsR595Pisum sativum Cameor genome v1aPisum sativum
caipsR720Pisum sativum Cameor genome v1aPisum sativum
caivuR0693Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
caiccR0810Cajanus cajan Asha genome v1.0Cajanus cajan
ancaiL0337Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancaiL1255Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ascaiL184Vigna angularis Jingnong 6 genome v1.1Vigna angularis
caitifR649Vicia faba cv. Tiffany genome v1.0Vicia faba
caivfhR651Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
caitifR728Vicia faba cv. Tiffany genome v1.0Vicia faba
caivfhR740Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
caivssR0740Vicia sativa cv. Studenica genome v1.0Vicia sativa
caivssR0779Vicia sativa cv. Studenica genome v1.0Vicia sativa
caivuaR651Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
caicanR0793Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum

Orthologs
Gene/TranscriptAssemblySpecies
Vfaba.Hedin2.R1.6g007880.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
evm.model.Chr11.1064Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
jg5658.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Vfaba.Tiffany.R1.1g034240.1Vicia faba cv. Tiffany genome v1.0Vicia faba
Vfaba.Hedin2.R1.1g050520.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
rna-KK1_022476Cajanus cajan Asha genome v1.0Cajanus cajan
jg43886.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
LR48_mrnaVigan08g111400Vigna angularis Jingnong 6 genome v1.1Vigna angularis
Psat5g270160.1Pisum sativum Cameor genome v1aPisum sativum
rna-TanjilR_06533Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
rna-TanjilR_03065Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
rna-XM_004507148.3Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Ca_18036Ca_18036_ICC4958_v2Cicer arietinumgene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Ca_18036.1_ICC4958_v2Ca_18036.1_ICC4958_v2Cicer arietinumpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Ca_18036.1.exon1Ca_18036.1.exon1_ICC4958_v2Cicer arietinumexon
Ca_18036.1.exon2Ca_18036.1.exon2_ICC4958_v2Cicer arietinumexon
Ca_18036.1.exon3Ca_18036.1.exon3_ICC4958_v2Cicer arietinumexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Ca_18036.1.cds1Ca_18036.1.cds1_ICC4958_v2Cicer arietinumCDS
Ca_18036.1.cds2Ca_18036.1.cds2_ICC4958_v2Cicer arietinumCDS
Ca_18036.1.cds3Ca_18036.1.cds3_ICC4958_v2Cicer arietinumCDS


Homology
[Close]
BLAST of Ca_18036.1 vs. DB:Swiss
Match: NAF1_SCHPO (H/ACA ribonucleoprotein complex non-core subunit NAF1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=naf1 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.093e-14
Identity = 46/129 (35.66%), Postives = 75/129 (58.14%), Query Frame = 1 
Query:  106 DVTLEPHHQMLPVGVVMSTLGAKVIVEGVEKHEPL--NEGSVLWLTQSRKPLGFVDEIFGPVKNPYYVVRYNSESEVPAGIQGGTTLVSFVPEFADRVLNFKELYSKGYDASGPFDEEVN-DEVEFSDD 483
            ++ L+P+  + P+G ++  L  +V+V+     E +  +E +VL   + R  +G++ E FGPV +PYY+VR+++E E  A        V +VP  A+++      Y KG DAS  +DEE+N  E EFSDD
Sbjct:  241 EIVLQPNSLIEPLGKIIQVLKREVVVKSDIDDEKIVFDEKTVLCF-EDRSIIGYIHETFGPVSSPYYIVRFSTEEECSAINACMGRPVFYVPTMANKIDPEPLKYIKGSDASNVYDEEINPSEQEFSDD 368
[Close]
BLAST of Ca_18036.1 vs. DB:Swiss
Match: NAF1_HUMAN (H/ACA ribonucleoprotein complex non-core subunit NAF1 OS=Homo sapiens OX=9606 GN=NAF1 PE=1 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.097e-12
Identity = 56/174 (32.18%), Postives = 95/174 (54.60%), Query Frame = 1 
Query:    1 MVSRSAVDDDTDDEVIVG------PIRSKHEI--QKLPPVPQVDVTLEPHHQMLPVGVVMSTLGAKVIVEGVEKHEPLNEGSVLWLTQSRKPLGFVDEIFGPVKNPYYVVRYNSESEVPA-GIQGGTTLVSFVP---EFADRVLNFKELYSKGYDASGPFDEEVNDE-VEFSDD 483
             +S   V  D DD++ +       P+++K E+   +LP V ++ + L    ++ P+G+V S +   VI+E +    P+NE +V++ +  R+  G + EIFGPV +P+YV+R+NS   + + GI+   T+  F P   +F   +   K    KG DAS   D+E   E ++FSDD
Sbjct:  146 CISLPPVLSDGDDDLQIEKENKNFPLKTKDELLLNELPSVEELTIILPEDIELKPLGMVSSIIEQLVIIESMTNLPPVNEETVIFKS-DRQAAGKIFEIFGPVAHPFYVLRFNSSDHIESKGIKIKETMY-FAPSMKDFTQYIFTEKLKQDKGSDASWKNDQEPPPEALDFSDD 317
[Close]
BLAST of Ca_18036.1 vs. DB:Swiss
Match: NAF1_MOUSE (H/ACA ribonucleoprotein complex non-core subunit NAF1 OS=Mus musculus OX=10090 GN=Naf1 PE=1 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 4.606e-12
Identity = 53/150 (35.33%), Postives = 84/150 (56.00%), Query Frame = 1 
Query:   55 PIRSKHEI--QKLPPVPQVDVTLEPHHQMLPVGVVMSTLGAKVIVEGVEKHEPLNEGSVLWLTQSRKPLGFVDEIFGPVKNPYYVVRYNSESEVPA-GIQGGTTLVSFVP---EFADRVLNFKELYSKGYDASGPFDEEVNDEV-EFSDD 483
            P+++K E+   +LP V ++ V L     + P+G V S +   VI+E V    P+NE +V++ +  R+  G + EIFGPV +P+YV+R+NS   + + GI+   T+  F P   +F   +   K    +G DAS   D+E   EV +FSDD
Sbjct:  163 PLKTKDELLLNELPSVEELTVILPEDIALKPLGKVSSIIEQLVIIESVTNIPPVNEDTVIFKS-DRQAAGKIFEIFGPVAHPFYVLRFNSSDHIESKGIKINDTMY-FAPSMKDFTQYIFTEKLKQDRGSDASWKNDQEPPPEVLDFSDD 310
[Close]
BLAST of Ca_18036.1 vs. DB:Swiss
Match: NAF1_RAT (H/ACA ribonucleoprotein complex non-core subunit NAF1 OS=Rattus norvegicus OX=10116 GN=Naf1 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.362e-12
Identity = 52/150 (34.67%), Postives = 85/150 (56.67%), Query Frame = 1 
Query:   55 PIRSKHEI--QKLPPVPQVDVTLEPHHQMLPVGVVMSTLGAKVIVEGVEKHEPLNEGSVLWLTQSRKPLGFVDEIFGPVKNPYYVVRYNSESEVPA-GIQGGTTLVSFVP---EFADRVLNFKELYSKGYDASGPFDEEVNDE-VEFSDD 483
            P+++K E+   +LP V ++ VTL     + P+G V S +   VI+E +    P+NE +V++ +  R+  G + EIFGPV +P+YV+R+NS   + + GI+   T+  F P   +F   +   K    +G DAS   D+E   E ++FSDD
Sbjct:  135 PLKTKDELLLNELPSVEELTVTLPEDIALKPLGKVSSIIEQLVIIESMTNIPPVNEDTVIFKS-DRQAAGKIFEIFGPVAHPFYVLRFNSSEHIESKGIKIKDTMY-FAPSMKDFTQYIFTEKLKQDRGSDASWKNDQEPPPEALDFSDD 282
[Close]
BLAST of Ca_18036.1 vs. DB:Swiss
Match: NAF1_DROME (H/ACA ribonucleoprotein complex non-core subunit NAF1 OS=Drosophila melanogaster OX=7227 GN=CG10341 PE=1 SV=2)

HSP 1 Score: 57.3806 bits (137), Expect = 1.380e-7
Identity = 42/135 (31.11%), Postives = 71/135 (52.59%), Query Frame = 1 
Query:   58 IRSKHEIQKLPPVPQVDVTLEPHHQMLPVGVVMSTLGAKVIVEGVEKHEPLNEGSVLWLTQSRKPLGFVDEIFGPVKNPYYVVRYNSESEV-PAGIQGGTTLVSFVP--EFADRVLNFKELYSKGYDASGPFDEE 453
            +R +  +  LPP+ Q+++T+ P  + + +G V S +   V+V  +      +  +VL+L + RK LG V ++ G V +P Y VR+NS  ++   GI+ G  +V   P  E    V+  K +  +G DAS   D E
Sbjct:  262 VRGEMLLDDLPPIHQLEITV-PEDECVELGKVQSIVDQLVLVSVLPNSMLFDLDTVLFLEKGRKVLGEVFDVLGQVSDPLYCVRFNSNKQILDRGIKIG-DVVYCAPKTEHTQFVILSKLMQVRGSDASWEHDVE 394
[Close]
BLAST of Ca_18036.1 vs. DB:Swiss
Match: NAF1_YEAS7 (H/ACA ribonucleoprotein complex non-core subunit NAF1 OS=Saccharomyces cerevisiae (strain YJM789) OX=307796 GN=NAF1 PE=3 SV=1)

HSP 1 Score: 56.9954 bits (136), Expect = 1.942e-7
Identity = 50/162 (30.86%), Postives = 85/162 (52.47%), Query Frame = 1 
Query:   22 DDDTDDEVIVGPIRSKHEI--QKLPPVPQVDVTLEPHHQMLPVGVVMSTLGAKVIVEGVEKHEP--LNEGSVLWLTQSRKPLGFVDEIFGPVKNPYYVVRY-NSESEV--PAGIQGGTTLVSFVPEFADRVLNFKELYSKGYDASGPFD-EEVNDEVEFSDD 483
            +D+ +D    GPI SK+EI  + +P +P+ D  +     + P+GV+ S     +I+      E   L EGS+  L + R  +G + E+FGP++NP+Y ++  +S+  +     ++ G       P+ A  +  F+   +KG DAS  +D E   +E EFSDD
Sbjct:   99 EDEDEDPSPSGPILSKNEILEETVPELPE-DYEISEKTIITPIGVLKSAFENNIIIHATMSGEKRVLKEGSIFCL-EDRTLIGMLTEVFGPLQNPFYRIKLPDSKKNLFDELKVRLGEKAFIVTPD-AHWIDTFELKRNKGTDASNGYDEELPEEEQEFSDD 257
[Close]
BLAST of Ca_18036.1 vs. DB:Swiss
Match: NAF1_YEAST (H/ACA ribonucleoprotein complex non-core subunit NAF1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=NAF1 PE=1 SV=1)

HSP 1 Score: 56.9954 bits (136), Expect = 2.011e-7
Identity = 50/162 (30.86%), Postives = 85/162 (52.47%), Query Frame = 1 
Query:   22 DDDTDDEVIVGPIRSKHEI--QKLPPVPQVDVTLEPHHQMLPVGVVMSTLGAKVIVEGVEKHEP--LNEGSVLWLTQSRKPLGFVDEIFGPVKNPYYVVRY-NSESEV--PAGIQGGTTLVSFVPEFADRVLNFKELYSKGYDASGPFD-EEVNDEVEFSDD 483
            +D+ +D    GPI SK+EI  + +P +P+ D  +     + P+GV+ S     +I+      E   L EGS+  L + R  +G + E+FGP++NP+Y ++  +S+  +     ++ G       P+ A  +  F+   +KG DAS  +D E   +E EFSDD
Sbjct:   99 EDEDEDPSPSGPILSKNEILEETVPELPE-DYEISEKTIITPIGVLKSAFENNIIIHATMSGEKRVLKEGSIFCL-EDRTLIGMLTEVFGPLQNPFYRIKLPDSKKNLFDELKVRLGEKAFIVTPD-AHWIDTFELKRNKGTDASNGYDEELPEEEQEFSDD 257
The following BLAST results are available for this feature:
BLAST of Ca_18036.1 vs. DB:Swiss
Analysis Date: 2019-05-21 (BLAST: C. arietinum ICC 4958 v2.0 (desi) Swissprot)
Total hits: 7
Match NameE-valueIdentityDescription
NAF1_SCHPO2.093e-1435.66H/ACA ribonucleoprotein complex non-core subunit N... [more]
NAF1_HUMAN1.097e-1232.18H/ACA ribonucleoprotein complex non-core subunit N... [more]
NAF1_MOUSE4.606e-1235.33H/ACA ribonucleoprotein complex non-core subunit N... [more]
NAF1_RAT5.362e-1234.67H/ACA ribonucleoprotein complex non-core subunit N... [more]
NAF1_DROME1.380e-731.11H/ACA ribonucleoprotein complex non-core subunit N... [more]
NAF1_YEAS71.942e-730.86H/ACA ribonucleoprotein complex non-core subunit N... [more]
NAF1_YEAST2.011e-730.86H/ACA ribonucleoprotein complex non-core subunit N... [more]
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InterPro
Analysis Name: InterProScan: C. arietinum ICC 4958, v2.0 (desi)
Date Performed: 2019-05-21
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR038664H/ACA RNP complex subunit Gar1/Naf1, Cbf5-binding domainGENE3D2.40.10.230coord: 17..118
e-value: 3.2E-28
score: 99.8
IPR007504H/ACA ribonucleoprotein complex, subunit Gar1/Naf1PFAMPF04410Gar1coord: 28..174
e-value: 2.7E-35
score: 121.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 248..430
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 176..218
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 248..275
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 287..411
NoneNo IPR availablePANTHERPTHR31633:SF1H/ACA RIBONUCLEOPROTEIN COMPLEX NON-CORE SUBUNIT NAF1coord: 8..380
IPR040309H/ACA ribonucleoprotein complex non-core subunit Naf1PANTHERPTHR31633FAMILY NOT NAMEDcoord: 8..380
IPR009000Translation protein, beta-barrel domain superfamilySUPERFAMILY50447Translation proteinscoord: 45..108

Sequences
The following sequences are available for this feature:

mRNA sequence

>Ca_18036.1_ICC4958_v2 ID=Ca_18036.1_ICC4958_v2; Name=Ca_18036.1; organism=Cicer arietinum; type=mRNA; length=2499bp
ATGGTTAGTAGGAGTGCCGTTGATGATGATACTGATGATGAGGTTATAGT
AGGACCAATCAGGTCAAAGCATGAGATTCAGGTATTTCTTTTCTTTCTTT
TTCTTTTTTAATCTTAATTCATGATAAATATATTTTTTTTAATTTGATTG
TGTAGTGCTTTGTTGAGAATAAACCGTTTTTTTTTTAATTTAAAAAATAA
AAAGAGAGCAATGCTACTTTTTACTTAAGATTTATATATGAGAAAGAGAA
GAAAGCATCAAAATAGGAGATTTGATCCATTAGATTCTAGGTGGTTAATG
CTTGTAAGTGTGACATGTTGCCACATAAGATTCTAGGAGATTTAACCAAT
CAAATTCTAGCATGGGGGAATGAGTGGTTATTGTTTGTAAGTGTGACCTA
CTGTCATATAAGATTCTTGTGTCAACTTATCTTGTAGCAAAAACCATTTT
CCAAAAAAAACAATTAAGTGTTCAACTATTTGGTAATTCAATTATTAATT
CTTTTATCATCATAGCATGTTTTTGAGTTATTTGTTGAATGTAGACTTTG
TGTGCTATGCTTTTCTCCATGGCGAATACTGCATATAATTACATTAATAC
ATTAGGTGTTGTCAAATAGCGGCTAAGGTAGTGCTATAGCCTACAGGAAT
TTGAACAAATTGCTATTCTTCCATGATATGCTATTTAGTACAAAATGTTG
TCAATAATGGCTGTAGCTATAGCGGTGCTATACCACTATAGCGTAGCAGA
ATTTGAACAAATTGCTATTTTCCATGATATGCGATTTACAACTGTTTTAC
AGACATGTATATGGTGGATTTGTATCTCTTTTGTTGCAGTCCCAAGACTT
TTATACTTTGCAGAATTGCAGTTTGGTTTGTTCTTGGGAATATTTTGTGC
CCCTTTTGAAGTCTAGGCTCTGTCCTATTTGATCTTTTACTATGAATGGT
GTTTTGGTTGGCATTTAGAATTGAAGAGCGGTAAGAACTTAGAATGTAAA
AAATCTCAGCGGCCAATTTGATGCACAAACTTCAAGTGAAGAATTTTTCT
TATTGAATAATGTACCCTAATTTGACTAACTTTTTAAATCTCTGACGCGT
AATGCTTCTTTTGAATGGTGTTGACTTTACAGAAATTGCCTCCAGTTCCT
CAGGTGGATGTGACTTTAGAACCACACCATCAAATGCTACCTGTGGGAGT
TGTTATGTCGGTAAGCTCTCAGTATTGATTAAGTTGATAGGAAACCCCCT
ATCTGTTTGAATTTAGTGTTTGTTATTAGATTTGATAATAACATGCATAA
ATCAGAAGCTGTACCAATTATTGTTGGAAATTAGACTCAACTTAATCAAC
TTTCTTATTTGACAGACTCTAGGTGCTAAAGTCATTGTGGAAGGAGTGGA
GAAGCATGAACCTCTCAATGAGGGTTCTGTTCTCTGGCTGACTCAAAGCC
GCAAACCACTAGGTTTTGTAGACGAAATCTTTGGACCAGTCAAAAATCCA
TATTACGTTGTGAGATACAATTCTGAAAGTGAAGTTCCTGCGGGTATCCA
AGGGGGAACAACTTTGGTCTCGTTTGTTCCAGAATTTGCTGACCGCGTGC
TTAATTTTAAGGAACTTTACTCGAAAGGCTACGATGCATCTGGTCCGTTT
GATGAAGAGGTTAATGATGAAGTAGAGTTTTCAGACGATGAGAAAGAAGC
TGAATACAAGAAAATGCAGCAAATGCAGAAAATGGCCAAGAGAGGGGTAA
ATGATCAAAATCCCAGCAAGAAAAGAAACAATAGAAAGAAATTTACACCA
AATGAGCGTGTGTTACCTACTGCCCCTAATGCACCTGTGGCAGCACAGCG
TGTGTTGCCTACTGTCCCTAATGCACCTGCATCAGCACCGTTGGTTAATC
ATGGAAACCGTTATTTTTCGGGCATTGGACAAGGTCAATTGGGGGGAACT
ACCACAGTTTCTCCATTTCAACCTTTAAATGCAGGTCCTAACTTTGCTAC
AAATGGAATGTGGCCAAATGGGACAACATTTCCACAGCAGCCACAGCCAC
AGCCTGATCTGCTTCCAAATGGATTTCCGACAAATGCCGGGTCATATTAT
CCACAAAACACACAATTTTCTCATCAGTTTCCTGCGCCAGGAATTCCATT
TCAACAGCAGTTTAATCCCAATCAAAGATCTCTTTTCCCATCTATGATGC
CTGGGGTACAGCCCAATATATTTACACAACAACCCATGTATGCACCGCCA
TTTGCGGGTCAAAACCAAATGACATTTGATTCGAGTTCACCTTTCCAACA
GATGCAGCCACCTCCACAACCTATCTTTCAGGCACAACAGGGTTTTCCAC
CTTCGGAATTGCAGTCAGACAGAAACCTGAACTTGCATCCCAGTTCTATT
CCTGGCAACCCCTCTCAATTTCATCCAGGTTCATCTGCTAGTCGAGGGAG
GCCAACATTTCGTGGCGGCGGTAGGAGAGGGTGGCGACCTACTAAGTGA
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protein sequence of Ca_18036.1_ICC4958_v2

>Ca_18036.1_ICC4958_v2 ID=Ca_18036.1_ICC4958_v2; Name=Ca_18036.1_ICC4958_v2; organism=Cicer arietinum; type=polypeptide; length=430bp
MVSRSAVDDDTDDEVIVGPIRSKHEIQKLPPVPQVDVTLEPHHQMLPVGV
VMSTLGAKVIVEGVEKHEPLNEGSVLWLTQSRKPLGFVDEIFGPVKNPYY
VVRYNSESEVPAGIQGGTTLVSFVPEFADRVLNFKELYSKGYDASGPFDE
EVNDEVEFSDDEKEAEYKKMQQMQKMAKRGVNDQNPSKKRNNRKKFTPNX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXLVNHGNRYFSGIGQGQLGGTTT
VSPFQPLNAGPNFATNGMWPNGTTFPQQPQPQPDLLPNGFPTNAGSYYPQ
NTQFSHQFPAPGIPFQQQFNPNQRSLFPSMMPGVQPNIFTQQPMYAPPFA
GQNQMTFDSSSPFQQMQPPPQPIFQAQQGFPPSELQSDRNLNLHPSSIPG
NPSQFHPGSSASRGRPTFRGGGRRGWRPTK
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mRNA from alignment at Ca_LG_6:38601892..38604390+

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ca_18036.1_ICC4958_v2 ID=Ca_18036.1_ICC4958_v2; Name=Ca_18036.1; organism=Cicer arietinum; type=mRNA; length=2499bp; location=Sequence derived from: Ca_LG_6:38601892..38604390+ (Cicer arietinum
ATGGTTAGTAGGAGTGCCGTTGATGATGATACTGATGATGAGGTTATAGT
AGGACCAATCAGGTCAAAGCATGAGATTCAGGTATTTCTTTTCTTTCTTT
TTCTTTTTTAATCTTAATTCATGATAAATATATTTTTTTTAATTTGATTG
TGTAGTGCTTTGTTGAGAATAAACCGTTTTTTTTTTAATTTAAAAAATAA
AAAGAGAGCAATGCTACTTTTTACTTAAGATTTATATATGAGAAAGAGAA
GAAAGCATCAAAATAGGAGATTTGATCCATTAGATTCTAGGTGGTTAATG
CTTGTAAGTGTGACATGTTGCCACATAAGATTCTAGGAGATTTAACCAAT
CAAATTCTAGCATGGGGGAATGAGTGGTTATTGTTTGTAAGTGTGACCTA
CTGTCATATAAGATTCTTGTGTCAACTTATCTTGTAGCAAAAACCATTTT
CCAAAAAAAACAATTAAGTGTTCAACTATTTGGTAATTCAATTATTAATT
CTTTTATCATCATAGCATGTTTTTGAGTTATTTGTTGAATGTAGACTTTG
TGTGCTATGCTTTTCTCCATGGCGAATACTGCATATAATTACATTAATAC
ATTAGGTGTTGTCAAATAGCGGCTAAGGTAGTGCTATAGCCTACAGGAAT
TTGAACAAATTGCTATTCTTCCATGATATGCTATTTAGTACAAAATGTTG
TCAATAATGGCTGTAGCTATAGCGGTGCTATACCACTATAGCGTAGCAGA
ATTTGAACAAATTGCTATTTTCCATGATATGCGATTTACAACTGTTTTAC
AGACATGTATATGGTGGATTTGTATCTCTTTTGTTGCAGTCCCAAGACTT
TTATACTTTGCAGAATTGCAGTTTGGTTTGTTCTTGGGAATATTTTGTGC
CCCTTTTGAAGTCTAGGCTCTGTCCTATTTGATCTTTTACTATGAATGGT
GTTTTGGTTGGCATTTAGAATTGAAGAGCGGTAAGAACTTAGAATGTAAA
AAATCTCAGCGGCCAATTTGATGCACAAACTTCAAGTGAAGAATTTTTCT
TATTGAATAATGTACCCTAATTTGACTAACTTTTTAAATCTCTGACGCGT
AATGCTTCTTTTGAATGGTGTTGACTTTACAGAAATTGCCTCCAGTTCCT
CAGGTGGATGTGACTTTAGAACCACACCATCAAATGCTACCTGTGGGAGT
TGTTATGTCGGTAAGCTCTCAGTATTGATTAAGTTGATAGGAAACCCCCT
ATCTGTTTGAATTTAGTGTTTGTTATTAGATTTGATAATAACATGCATAA
ATCAGAAGCTGTACCAATTATTGTTGGAAATTAGACTCAACTTAATCAAC
TTTCTTATTTGACAGACTCTAGGTGCTAAAGTCATTGTGGAAGGAGTGGA
GAAGCATGAACCTCTCAATGAGGGTTCTGTTCTCTGGCTGACTCAAAGCC
GCAAACCACTAGGTTTTGTAGACGAAATCTTTGGACCAGTCAAAAATCCA
TATTACGTTGTGAGATACAATTCTGAAAGTGAAGTTCCTGCGGGTATCCA
AGGGGGAACAACTTTGGTCTCGTTTGTTCCAGAATTTGCTGACCGCGTGC
TTAATTTTAAGGAACTTTACTCGAAAGGCTACGATGCATCTGGTCCGTTT
GATGAAGAGGTTAATGATGAAGTAGAGTTTTCAGACGATGAGAAAGAAGC
TGAATACAAGAAAATGCAGCAAATGCAGAAAATGGCCAAGAGAGGGGTAA
ATGATCAAAATCCCAGCAAGAAAAGAAACAATAGAAAGAAATTTACACCA
AATGAGCGTGTGTTACCTACTGCCCCTAATGCACCTGTGGCAGCACAGCG
TGTGTTGCCTACTGTCCCTAATGCACCTGCATCAGCACCGTTGGTTAATC
ATGGAAACCGTTATTTTTCGGGCATTGGACAAGGTCAATTGGGGGGAACT
ACCACAGTTTCTCCATTTCAACCTTTAAATGCAGGTCCTAACTTTGCTAC
AAATGGAATGTGGCCAAATGGGACAACATTTCCACAGCAGCCACAGCCAC
AGCCTGATCTGCTTCCAAATGGATTTCCGACAAATGCCGGGTCATATTAT
CCACAAAACACACAATTTTCTCATCAGTTTCCTGCGCCAGGAATTCCATT
TCAACAGCAGTTTAATCCCAATCAAAGATCTCTTTTCCCATCTATGATGC
CTGGGGTACAGCCCAATATATTTACACAACAACCCATGTATGCACCGCCA
TTTGCGGGTCAAAACCAAATGACATTTGATTCGAGTTCACCTTTCCAACA
GATGCAGCCACCTCCACAACCTATCTTTCAGGCACAACAGGGTTTTCCAC
CTTCGGAATTGCAGTCAGACAGAAACCTGAACTTGCATCCCAGTTCTATT
CCTGGCAACCCCTCTCAATTTCATCCAGGTTCATCTGCTAGTCGAGGGAG
GCCAACATTTCGTGGCGGCGGTAGGAGAGGGTGGCGACCTACTAAGTGA
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Coding sequence (CDS) from alignment at Ca_LG_6:38601892..38604390+

>Ca_18036.1_ICC4958_v2 ID=Ca_18036.1_ICC4958_v2; Name=Ca_18036.1; organism=Cicer arietinum; type=CDS; length=1293bp; location=Sequence derived from: Ca_LG_6:38601892..38604390+ (Cicer arietinum
ATGGTTAGTAGGAGTGCCGTTGATGATGATACTGATGATGAGGTTATAGT
AGGACCAATCAGGTCAAAGCATGAGATTCAGAAATTGCCTCCAGTTCCTC
AGGTGGATGTGACTTTAGAACCACACCATCAAATGCTACCTGTGGGAGTT
GTTATGTCGACTCTAGGTGCTAAAGTCATTGTGGAAGGAGTGGAGAAGCA
TGAACCTCTCAATGAGGGTTCTGTTCTCTGGCTGACTCAAAGCCGCAAAC
CACTAGGTTTTGTAGACGAAATCTTTGGACCAGTCAAAAATCCATATTAC
GTTGTGAGATACAATTCTGAAAGTGAAGTTCCTGCGGGTATCCAAGGGGG
AACAACTTTGGTCTCGTTTGTTCCAGAATTTGCTGACCGCGTGCTTAATT
TTAAGGAACTTTACTCGAAAGGCTACGATGCATCTGGTCCGTTTGATGAA
GAGGTTAATGATGAAGTAGAGTTTTCAGACGATGAGAAAGAAGCTGAATA
CAAGAAAATGCAGCAAATGCAGAAAATGGCCAAGAGAGGGGTAAATGATC
AAAATCCCAGCAAGAAAAGAAACAATAGAAAGAAATTTACACCAAATGAG
CGTGTGTTACCTACTGCCCCTAATGCACCTGTGGCAGCACAGCGTGTGTT
GCCTACTGTCCCTAATGCACCTGCATCAGCACCGTTGGTTAATCATGGAA
ACCGTTATTTTTCGGGCATTGGACAAGGTCAATTGGGGGGAACTACCACA
GTTTCTCCATTTCAACCTTTAAATGCAGGTCCTAACTTTGCTACAAATGG
AATGTGGCCAAATGGGACAACATTTCCACAGCAGCCACAGCCACAGCCTG
ATCTGCTTCCAAATGGATTTCCGACAAATGCCGGGTCATATTATCCACAA
AACACACAATTTTCTCATCAGTTTCCTGCGCCAGGAATTCCATTTCAACA
GCAGTTTAATCCCAATCAAAGATCTCTTTTCCCATCTATGATGCCTGGGG
TACAGCCCAATATATTTACACAACAACCCATGTATGCACCGCCATTTGCG
GGTCAAAACCAAATGACATTTGATTCGAGTTCACCTTTCCAACAGATGCA
GCCACCTCCACAACCTATCTTTCAGGCACAACAGGGTTTTCCACCTTCGG
AATTGCAGTCAGACAGAAACCTGAACTTGCATCCCAGTTCTATTCCTGGC
AACCCCTCTCAATTTCATCCAGGTTCATCTGCTAGTCGAGGGAGGCCAAC
ATTTCGTGGCGGCGGTAGGAGAGGGTGGCGACCTACTAAGTGA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR038664Gar1/Naf1_Cbf5-bd_sf
IPR007504H/ACA_rnp_Gar1/Naf1
IPR040309Naf1
IPR009000Transl_B-barrel_sf
Vocabulary: Biological Process
TermDefinition
GO:0042254ribosome biogenesis
GO:0001522pseudouridine synthesis
GO:0000493box H/ACA snoRNP assembly
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
Vocabulary: Cellular Component
TermDefinition
GO:0005732sno(s)RNA-containing ribonucleoprotein complex