Ca_22496.1, Ca_22496.1_ICC4958_v2 (mRNA) Cicer arietinum

Transcript Overview
NameCa_22496.1
Unique NameCa_22496.1_ICC4958_v2
TypemRNA
OrganismCicer arietinum (chickpea)
Sequence length275
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Ca_LG_8supercontigCa_LG_8:4353091..4353365 -Cicer arietinum ICC 4958 genome v2n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Cicer arietinum ICC 4958 genome v22015-08-11
InterProScan: C. arietinum ICC 4958, v2.0 (desi)2019-05-21
BLAST: C. arietinum ICC 4958 v2.0 (desi) Swissprot2019-05-21
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
caipvR1033Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
caivuR0988Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
caiccR1013Cajanus cajan Asha genome v1.0Cajanus cajan
ancaiL0602Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancaiL0676Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancaiL1038Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancaiL1191Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancaiL1353Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
caizwsR958Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
caivrvR839Vigna radiata cv. VC1973A genome v6.0Vigna radiata
caivssR1126Vicia sativa cv. Studenica genome v1.0Vicia sativa
caivssR1130Vicia sativa cv. Studenica genome v1.0Vicia sativa
caivuaR920Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
caivuaR934Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
caicanR0984Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum

Orthologs
Gene/TranscriptAssemblySpecies
rna-XM_014665032.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
Phvul.002G051000.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
jg4298.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
rna-TanjilR_19542Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Psat04G0647500-T1Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
evm.model.Chr02.1908Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
rna-XM_004511265.3Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Ca_22496Ca_22496_ICC4958_v2Cicer arietinumgene


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Ca_22496.1.utr3p1Ca_22496.1.utr3p1_ICC4958_v2Cicer arietinumthree_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Ca_22496.1.cds1Ca_22496.1.cds1_ICC4958_v2Cicer arietinumCDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Ca_22496.1.exon1Ca_22496.1.exon1_ICC4958_v2Cicer arietinumexon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Ca_22496.1_ICC4958_v2Ca_22496.1_ICC4958_v2Cicer arietinumpolypeptide


Homology
The following BLAST results are available for this feature:
BLAST of Ca_22496.1 vs. DB:Swiss
Analysis Date: 2019-05-21 (BLAST: C. arietinum ICC 4958 v2.0 (desi) Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan: C. arietinum ICC 4958, v2.0 (desi)
Date Performed: 2019-05-21
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 16..36
NoneNo IPR availablePANTHERPTHR34563:SF4coord: 1..64
NoneNo IPR availablePANTHERPTHR34563FAMILY NOT NAMEDcoord: 1..64

Sequences
The following sequences are available for this feature:

mRNA sequence

>Ca_22496.1_ICC4958_v2 ID=Ca_22496.1_ICC4958_v2; Name=Ca_22496.1; organism=Cicer arietinum; type=mRNA; length=275bp
ATGGCGAATCAGTTCGGAAATCTGGTAGAGTCGATAAAGTCAAAGGTGAA
GTCTCTGAAGATGAAGAAACCAAAGAAGCCATACATGAAGATGGATAAGA
GTGCAAGCGTGAAGGTCGAAATTCGAAGCAGAAAAGCTCGTAAGATTATT
GAAAAGACTTTGAAAGCTGCTGATAATCCCCGCAATCTCAATCTCACTTA
ATTAATACTCATTTCTTCTCGGTTTCATTTTCAATCTCACTCAATCAACA
TGTATATATATTCTCTGTCTCAGAC
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protein sequence of Ca_22496.1_ICC4958_v2

>Ca_22496.1_ICC4958_v2 ID=Ca_22496.1_ICC4958_v2; Name=Ca_22496.1_ICC4958_v2; organism=Cicer arietinum; type=polypeptide; length=66bp
MANQFGNLVESIKSKVKSLKMKKPKKPYMKMDKSASVKVEIRSRKARKII
EKTLKAADNPRNLNLT
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mRNA from alignment at Ca_LG_8:4353091..4353365-

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ca_22496.1_ICC4958_v2 ID=Ca_22496.1_ICC4958_v2; Name=Ca_22496.1; organism=Cicer arietinum; type=mRNA; length=275bp; location=Sequence derived from: Ca_LG_8:4353091..4353365- (Cicer arietinum
ATGGCGAATCAGTTCGGAAATCTGGTAGAGTCGATAAAGTCAAAGGTGAA
GTCTCTGAAGATGAAGAAACCAAAGAAGCCATACATGAAGATGGATAAGA
GTGCAAGCGTGAAGGTCGAAATTCGAAGCAGAAAAGCTCGTAAGATTATT
GAAAAGACTTTGAAAGCTGCTGATAATCCCCGCAATCTCAATCTCACTTA
ATTAATACTCATTTCTTCTCGGTTTCATTTTCAATCTCACTCAATCAACA
TGTATATATATTCTCTGTCTCAGAC
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Coding sequence (CDS) from alignment at Ca_LG_8:4353091..4353365-

>Ca_22496.1_ICC4958_v2 ID=Ca_22496.1_ICC4958_v2; Name=Ca_22496.1; organism=Cicer arietinum; type=CDS; length=201bp; location=Sequence derived from: Ca_LG_8:4353091..4353365- (Cicer arietinum
ATGGCGAATCAGTTCGGAAATCTGGTAGAGTCGATAAAGTCAAAGGTGAA
GTCTCTGAAGATGAAGAAACCAAAGAAGCCATACATGAAGATGGATAAGA
GTGCAAGCGTGAAGGTCGAAATTCGAAGCAGAAAAGCTCGTAAGATTATT
GAAAAGACTTTGAAAGCTGCTGATAATCCCCGCAATCTCAATCTCACTTA
A
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