Cr_07205.1, Cr_07205.1_PI489777_v1 (mRNA) Cicer reticulatum

Transcript Overview


Name	Cr_07205.1
Unique Name	Cr_07205.1_PI489777_v1
Type	mRNA
Organism	Cicer reticulatum (wild chickpea)
Sequence length	5644

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
Cr_LG_3	supercontig	Cr_LG_3:33740001..33745644 -	Cicer reticulatum L. PI489777 genome v1	n/a

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Cicer reticulatum L. PI489777 genome v1	2016-08-26
BLAST: C. reticulatum PI489777 genome v1 Swissprot	2019-05-21
InterProScan: C. reticulatum PI489777 genome v1	2019-05-28

Orthologs

Syntenic blocks


Syntentic block	Assembly	Species
crpsR248	Pisum sativum Cameor genome v1a	Pisum sativum
crvuR287	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata
crzwsR248	Pisum sativum cv. Zhongwan6 genome v1.0	Pisum sativum
crtifR286	Vicia faba cv. Tiffany genome v1.0	Vicia faba
crvfhR290	Vicia faba inbred line Hedin/2 genome v1.0	Vicia faba
crvrvR252	Vigna radiata cv. VC1973A genome v6.0	Vigna radiata
crvssR265	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
crvuaR280	Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0	Vigna unguiculata subsp. sesquipedalis
cancrL240	Cicer arietinum CDC Frontier NCBI RefSeq v1	Cicer arietinum

Orthologs


Gene/Transcript	Assembly	Species
Psat3g148160.1	Pisum sativum Cameor genome v1a	Pisum sativum
jg6831.t1	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
rna-XM_012713292.2	Cicer arietinum CDC Frontier NCBI RefSeq v1	Cicer arietinum
Vigun05g134100.1	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata
rna-XM_014642656.2	Vigna radiata cv. VC1973A genome v6.0	Vigna radiata
Psat03G0464700-T1	Pisum sativum cv. Zhongwan6 genome v1.0	Pisum sativum
evm.model.Chr05.1187	Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0	Vigna unguiculata subsp. sesquipedalis

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Cr_07205	Cr_07205_PI489777_v1	Cicer reticulatum	gene

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
Cr_07205.1:utr3p1	Cr_07205.1:utr3p1_PI489777_v1	Cicer reticulatum	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
Cr_07205.1:cds4	Cr_07205.1:cds4_PI489777_v1	Cicer reticulatum	CDS
Cr_07205.1:cds3	Cr_07205.1:cds3_PI489777_v1	Cicer reticulatum	CDS
Cr_07205.1:cds2	Cr_07205.1:cds2_PI489777_v1	Cicer reticulatum	CDS
Cr_07205.1:cds1	Cr_07205.1:cds1_PI489777_v1	Cicer reticulatum	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
Cr_07205.1:exon4	Cr_07205.1:exon4_PI489777_v1	Cicer reticulatum	exon
Cr_07205.1:exon3	Cr_07205.1:exon3_PI489777_v1	Cicer reticulatum	exon
Cr_07205.1:exon2	Cr_07205.1:exon2_PI489777_v1	Cicer reticulatum	exon
Cr_07205.1:exon1	Cr_07205.1:exon1_PI489777_v1	Cicer reticulatum	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
Cr_07205.1:utr5p1	Cr_07205.1:utr5p1_PI489777_v1	Cicer reticulatum	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
Cr_07205.1_PI489777_v1	Cr_07205.1_PI489777_v1	Cicer reticulatum	polypeptide

Homology

[Close]

BLAST of Cr_07205.1 vs. DB:Swiss
Match: RIN4_ARATH (RPM1-interacting protein 4 OS=Arabidopsis thaliana OX=3702 GN=RIN4 PE=1 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 3.595e-43
Identity = 102/261 (39.08%), Postives = 142/261 (54.41%), Query Frame = 1

Query:   13 RSHVPKFGNWDGQDDVPYTAYFDKARKTR-PGTKMINPNDPEENSDLVLQNSSSDADIIHPKPKVYSENQSEKGSVRSTHNELQKSKEDGDLKNFVNSPARHDNLSNRSAGDSASRPGSHGVGSADTYRRPLKQSTGSEYSIERSPLHRQAKTPGRDSPSWERKSSYDSSHGTPGRSRLRPAN-RGDETPDKSAAVPKFGEWDESDPTSADGYTHIFNKVREEKHVAAGNAPGTPNGRSYVIRNQPANDKTQGCCFFWGRK 789
            RS+VPKFGNW+ +++VPYTAYFDKARKTR PG+K++NPNDPE NSD   Q          P P        +  +VR +  E  +S+E+ +LK F ++    +  +N+  G                     + S  + Y   +SPLH               K+SYD +    G+SR +P N R DE+P+K   VPKFG+WDE++P+SADGYTHIFNKVREE+   A N  G+    ++     P N+ +  CCF +G K
Sbjct:    3 RSNVPKFGNWEAEENVPYTAYFDKARKTRAPGSKIMNPNDPEYNSDSQSQ--------APPHPPSSRTKPEQVDTVRRSR-EHMRSREESELKQFGDAGGSSNEAANKRQG---------------------RASQNNSYD-NKSPLH---------------KNSYDGT----GKSRPKPTNLRADESPEKVTVVPKFGDWDENNPSSADGYTHIFNKVREERSSGA-NVSGSSRTPTHQSSRNP-NNTSSCCCFGFGGK 211

[Close]

BLAST of Cr_07205.1 vs. DB:Swiss
Match: NOI4_ARATH (Protein NOI4 OS=Arabidopsis thaliana OX=3702 GN=NOI4 PE=1 SV=1)

HSP 1 Score: 55.4546 bits (132), Expect = 4.425e-9
Identity = 26/46 (56.52%), Postives = 32/46 (69.57%), Query Frame = 1

Query:  577 DKSAAVPKFGEWDESDPTSADGYTHIFNKVREEKHVAAGNAPGTPN 714
            DK   +PKFGEWD +DP SA+G+T IFNK R+EK    G  PG+P 
Sbjct:    3 DKGRPLPKFGEWDVNDPASAEGFTVIFNKARDEKKT--GGKPGSPG 46

[Close]

BLAST of Cr_07205.1 vs. DB:Swiss
Match: NOIL_ELAOL (NOI-like protein OS=Elaeis oleifera OX=80265 PE=2 SV=1)

HSP 1 Score: 57.7658 bits (138), Expect = 1.098e-8
Identity = 34/103 (33.01%), Postives = 52/103 (50.49%), Query Frame = 1

Query:   10 QRSHVPKFGNWDGQDDVPYTAYFDKARKTR-PGTKMINPNDPEENSDLVLQNSSSDADIIHPKPKVYSENQSEKGSVRSTHNELQKSKEDGDLKNFVNSPARH 315
            Q +HVPKFGNWDG +++ YT YF+   + +  G+K+ NPNDPEEN       + +     H   + +  + S    V   H      +ED +   +V +P  H
Sbjct:    3 QPAHVPKFGNWDG-ENISYTTYFETVHRDKGDGSKIFNPNDPEENPQAFYPRTVAQD---HQHSEKHHNDTSTDYHVVKQHRRKHHRREDREFHRYVEAPRPH 101

The following BLAST results are available for this feature:

BLAST of Cr_07205.1 vs. DB:Swiss

BLAST of Cr_07205.1 vs. DB:Swiss
Analysis Date: 2019-05-21 (BLAST: C. reticulatum PI489777 genome v1 Swissprot)
Total hits: 3


Match Name	E-value	Identity	Description
RIN4_ARATH	3.595e-43	39.08	RPM1-interacting protein 4 OS=Arabidopsis thaliana...	[more]
NOI4_ARATH	4.425e-9	56.52	Protein NOI4 OS=Arabidopsis thaliana OX=3702 GN=NO...	[more]
NOIL_ELAOL	1.098e-8	33.01	NOI-like protein OS=Elaeis oleifera OX=80265 PE=2 ...	[more]

InterPro

Analysis Name: InterProScan: C. reticulatum PI489777 genome v1
Date Performed: 2019-05-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008700	RIN4, pathogenic type III effector avirulence factor Avr cleavage site	PFAM	PF05627	AvrRpt-cleavage	coord: 192..227 e-value: 1.6E-21 score: 75.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 102..117
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 183..201
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 148..167
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 132..146
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..213
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 81..99
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 228..247
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 41..60
None	No IPR available	PANTHER	PTHR33159:SF44		coord: 3..263
IPR040387	RPM1-interacting protein 4/NOI4	PANTHER	PTHR33159	FAMILY NOT NAMED	coord: 3..263

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at Cr_LG_3:33740001..33745644-
coding sequence from alignment at Cr_LG_3:33740001..33745644-

mRNA sequence

>Cr_07205.1_PI489777_v1 ID=Cr_07205.1_PI489777_v1; Name=Cr_07205.1; organism=Cicer reticulatum; type=mRNA; length=5644bp
AATGGTCAAACATTACCGGTGGCGCCGGTCACCGGTCGATAAACCTCTCT
CTAAACTCCAAACTTATTTTCTTTTCCGGTCAATCTCTTATTGAGTCTTT
GAATTGTACGGAGGGGCTTGTTGGGTTCTCTCAGTTTCCATCTTTATGGT
CTCTGATCCAACCAAAAATCTCAACTTTCTTCAACAATTCAGCTCTACAA
TATTTGGGTAGTTGCCGTTTTCTCAAACAAATGACTACAGTCAGTTCCTT
CTCTTTTCTCTCTCCTCTTTCTCAATTATTGTTTGGCCTTGTTTTTGCCA
CGTTTTTTTGTGTCCTATTATGATGGATTTTAGTTTTTTTAGGAAAAAGG
TTTCAATCCCTTGCATTATTATGTTGTAATCTTTTGCTATGTTAAGTGCA
GCACCTTTTTTGTTTTTAACTTTTTTCCCTTTTCAAGCTCTTAATTTTTT
TCCTTCTTTCTGATGCTTGATATAGTTTACCTAAATTTTGATTCATTTTT
CGGTTTGGGAGTCTCAATATGCTATATTACTTTGCTGATATCCCAACCAT
AATTCAATTAGAATTATGGCCTTTGTGATTTTCTTAGTTTATGTGGAAAT
TAGCTTCATAAATTATTAGGTTTTTATATTAAGTCTAACTCATTCTTTCA
ATTTGCAAAACCAATTTGTAACGTGAGAGACACCAATCTTTATGAACTTT
GTTAAGATCTTATCTTTTTTTAATGTGAGACTTAAGTTTTTCTCAATATA
AATAAGTTTGTGCTCAAATTTTAACTTAGTCTTATGGAATGGATTTGCTT
GGTTTTCATGGATAGAAAATATGATATCCAAGATGTATGTGTATTAGCAT
TTTTAGAAAAAGAAGAATTCCTAAATATAATTTTTGGCTAGTGGAGCTGT
ATAAGCATGCTTTTATGTTCTATTCATATGTTTGACTAAAACTATAACTT
TCTTTGTGCTGGAAACTTGTTGCTATTTATACTGTTTGGTTTCTTCATTA
TGTGTGTGTGTGAATATTTACATTGGTAACAACTTTGCAACATGTGACAG
TGAAAAGATAATGATGCTATGTGTTAAGATACTGTATTTAATTTTTGGAT
ATTTTAGGGTTCAAATTAAAGTTCTTTTGTTATTTCTTTTAGAGGTACAG
AAGGGGAAAATATCTTCCCCGAGGCTGTTTCCATTTTCCATCAAAGTTTA
CTTGTATATGTCTGATACACTTTACGCAGATTAATTCACCTATATTTGTT
ATCACTTGCAATAATTTGTAACTTCAGTCGGTCTAATATATTCACGAGAG
ATGTCGAAGCAACTTTCAAGAACCCGTCTACAACAACTACATTAAGGTAG
ACAAAAAAGTCAACCAAAATAAAAGCTAAAGAATAATGATCTTTGAAGCA
CTAACATGGACACAAACACCAGACACTGACATAGACACCTAAGCACCAAT
AATAATTTAAGAAAATAGAAGTAGTTGAATGTAATCACATGTACCGATGG
TGTTTGGCATCAACACATATCAGACATTGGACACGTCTTAAATCTGACAT
GTCGATGGCGGAACTGGTGTCACAAGAGAGTAAACAAAAACTTAACACCA
GTAGATTATTTCTTTCTCTTTGTTGGCTTACAGTTATCTTACAATAATTA
GGATAATGTTGATATAACATGCTTTTAAAAATGAAAAAGGAAAAGAAAAT
AGGAGAAAAAGAGAGGTACCCACTTTTGGAGCAGTGCAACATATTGCATA
AGAATGGTATAAACACTAAGGGAGTCGGGGAAATTGAATTCTTTAATATG
GATTTTGTGATGAAAATTAATTTGAAACAAACAGATGCAGATTCGTGATG
AATCTACTATCTGCTATATTATAAATGTATTTGGTGTTTTAAAGGAAAAA
AGAAGAATGCTTTCCGAATTACAGACTAAAATATGACTTTGATCTTTTTG
CTCCCGATAAAATTACTGATTTTTTTCTTCGAACACTATAAATCTTGTGT
AAAATCAACTGATAACATACCGATTTTGATGGAGAACTTCACTAATTGGT
AAGATTTTCACTTTAGGTTTGTGATGATATATGACTCTGCCCATGGCAGG
ATTGATAAATATTGTCATTTATTGAAATTTAATCATATTAATGACGTTTC
AAAGCAAATCTTTGTTCTTGAGTGGTAACGAAGAACAATCTGGTTGTTGT
TTGAATGTTAATGGACTGAATATAATATAAAGAGTGACATATTTATTAAT
TAAAATGACACTATTACCATTTTTTAACTGTCCTTGAGAGGATTTGAATT
TCATCCTTTGAGATAATAAGGTTAAACTTTTACTTTTGAGTTGACACCTC
ATAGACATGAAATTTGTTAACTGTCGTAAAATGTTACATGCTTGTTGGTC
AATTGCAATAAGTTGTACCAAGAGACATCTTAGAATACCATTGTACTAGT
AAGTTGAAACAACATAAAATTCAGGTTTGTAAACTTAAAATTGCATGAAT
CTTTTAACTATGCGGTCATTTTTTGGATCAATTTGGCTGCAAGGGCTTAA
GTTTCCTATAACATAAAAATTTTATGTGATTCATGCAAGAATAGTTTTTA
AAATGGAATATACTAGAAAATAAAAATGGAAGAGACTTTTAGCCATGTCT
TTTTTTTTTCTTTCTGTAATAAGGCTTGATAGTAGTTATTGTTGTTGTTG
AGAATGGATTAAAAACCATTATTACATGCTATCTTTCATCTTTTGTGAAT
TCTAGAGGGAAATGGATGGTTTGAATTGAATATTGTATTTTGGTTATTAT
TTGCAGTGTTGAATTTTGCTTTGGTGATAAAATAGAATAATCGTTTAGAT
CAATCTTAGAAGAGTTGTAAATGTGTAAATGGAAGAAAAATACATCAATT
AATATAGTAAGTATTGAGAGATATCAAGATACCTTTTGGAGATTATATCT
TAGATTTCAATAGGAGTCTTCCTAGAAACCAAAAAGTATACATTTTTCAA
GTTGTCAAATTATTAATCAGGCATGCTCTATTTATCTTGGTTGTCAATAA
CTTTTGCAACTAACAAAGACCGAGGGCGAAGTAAAACATTATTTCTTGAA
ATATTGAAATATTGAAATATTGAATCATTGGTTTCTGGGTTGCATTGTTC
ATTGGCATGGACATTTGGAATAAGTAAATCAGAGGTTTTTCCTCCACCAT
CATTCCAACATTGTGAAATATGAAGCATTGACACGAACACATGACACAAC
ATTGACATGTCGACCCCAATAATTATTTGAGAAAATGAAAGTGATTGAAT
GTAACCACAAGTGACAGTGTTGGACACAGACACGTGTTGGACATCAGACA
TGCCTTCAATCTGAAGTGTTTGTGCTACATAGATTTTGAGTTCCTTGGTG
ATTTATTTTGATGGATTGGAAAGAAGTTAGATGGCAAAATTTTGTTTCAG
GAGCAATTCTTGCTGTAATATACTGTGCTGACTTACAAATACTAGAATTT
TGTTGCATTTTTTATATCATTTGCTTTTAGAGAATATAGTCCTCTGTACT
TTGCCAAAGTGCTCTTTGTTTGCTTCTTTCTTCATCTATGAGTATAATTT
TAATCAGAAATCTCTTAGAGAGACTTGAATTGAATATGATGGGATAATAA
ATCATCCACAGTCAGCACTTCTATCATATTACAAATTGAAATAGATACTA
CTTTATATGATTGGGTGGAACAATGTTGTCAAATAGAGACTATAGTGGTG
CTGCCTACAGCACTTTTGTGTAGCAGAATTTGAACTAATTGTTATTGTTC
TGCAGTATCCTATTTAGTACAAAGTCTTGCCAAATAGCGACTATAGCACT
GCTGCGTAGCAGAATTTGAATAATCTATTATTTTGACATCACCAAACAAT
ATCTTTTGTTTCCTTGCTCTGTTATATACCTATTATTAACTCTGATTCGG
TACAAGAAGCATGTTTGTTAGCATTTAAAACCTGTATCAGGGTCTATTTG
TCAAAACTATACTTATAGGATCTCTTCAATGTGTGTCAATTTAACAGCAA
CGTTCTCATGTTCCAAAGTTTGGCAATTGGGATGGCCAAGACGATGTTCC
TTATACAGCTTATTTTGACAAAGCCCGGAAAACTCGACCTGGCACCAAAA
TGATTAATCCAAATGACCCTGAAGAAAATTCAGATTTAGTTCTTCAAAAT
TCATCTTCTGATGCCGACATAATTCATCCAAAACCCAAAGTTTATTCAGA
GAATCAATCCGAAAAAGGATCAGTGAGATCAACACATAATGAGTTACAAA
AGAGCAAGGAGGATGGTGATCTTAAGAATTTTGTTAACTCACCAGCTCGT
CATGACAATCTAAGCAACAGGAGTGCTGGTGATTCCGCCTCTCGTCCTGG
AAGCCATGGAGTAGGTTCTGCTGACACCTACAGAAGACCTTTAAAACAAA
GTACTGGCTCAGAGTACAGCATTGAACGGTCACCCCTTCATCGCCAGGCT
AAAACCCCTGGTAGAGATAGTCCTTCTTGGGAAAGAAAAAGTTCATACGA
TAGCAGTCATGGTACACCAGGAAGATCCCGATTGAGACCAGCCAATCGAG
GGGATGAAACTGTTAGTTTTCTTTTCTGTTGTCTTGGTCTGTCATTTAAA
TAAAATTTTAAAATCATGAATATATATTGCATCAATGATTGTAATTATAT
TTTTGAGTTGATGCAAATGATTGTTATTGTTCTAAGGTGTGAACATAGTT
GGGATATCAGTTTAACATAATTATGTCTCTGCAATCCAATTTTCGCTTAA
AAATATATTTTATCAATGATTGCCAATTTTTAAGCATTAAGCATTTGACT
TTTGAATCTTTATGAAACTTCCCTTCACAAATGATTTGAGTTTTCTGTGT
TTTATGAATTTGATTTGGCAGCCTGATAAAAGTGCTGCTGTTCCGAAATT
TGGTGAGTGGGATGAGAGTGACCCTACATCAGCTGATGGCTATACTCACA
TTTTCAACAAAGTGCGGGAGGAGAAACACGTTGCAGCTGGAAATGCGCCA
GGTACACCAAATGGAAGATCATACGTTATCCGAAACCAACCTGCCAATGA
CAAAACTCAGGTATACCTACAACGGCTGCTTAAGATTAAGACAGTCGATA
AATTTCCATCATGTTGATGCTTCATTGCTTCTCTTTGTTCTCATAATTGC
TTTTTCAGGGTTGCTGCTTTTTCTGGGGCAGAAAATGATTATTGAAAGTG
CATTTATATTGTGAGCAGAAAAGAAGATAAGAATAGTGTTGTTAATGGTC
GTGAGGCATGTTGCCTCACCTATAATTTGACTCCTTTATTATGAGGGGTG
TACTTTCAAGGGTAAAGTGCGGAATTTTAACCGGTTGAGATTTTAACAAT
TTGATAGCTTGTTATTCATGTGCTTGTATTTTATTGCAGTCTAAACTGTT
GATCTTTCAATCAATGGTTTTAATCCACACTTTACTCTTCCAAGTGCACA
CTCCACTTTAGAGGATCTAAATTCTACTCTTTTATATGTATATATATTAA
AGGCTCTCTTTCCCCGAGGGAAAATGTCGTCAAAGTGCCTTTGTCTTGAA
TGTGTCCCACTTGTATCTTTCTTTCGTTTGACCAGTAAGCACGC

protein sequence of Cr_07205.1_PI489777_v1

>Cr_07205.1_PI489777_v1 ID=Cr_07205.1_PI489777_v1; Name=Cr_07205.1_PI489777_v1; organism=Cicer reticulatum; type=polypeptide; length=263bp
MTTQRSHVPKFGNWDGQDDVPYTAYFDKARKTRPGTKMINPNDPEENSDL
VLQNSSSDADIIHPKPKVYSENQSEKGSVRSTHNELQKSKEDGDLKNFVN
SPARHDNLSNRSAGDSASRPGSHGVGSADTYRRPLKQSTGSEYSIERSPL
HRQAKTPGRDSPSWERKSSYDSSHGTPGRSRLRPANRGDETPDKSAAVPK
FGEWDESDPTSADGYTHIFNKVREEKHVAAGNAPGTPNGRSYVIRNQPAN
DKTQGCCFFWGRK

mRNA from alignment at Cr_LG_3:33740001..33745644-

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>Cr_07205.1_PI489777_v1 ID=Cr_07205.1_PI489777_v1; Name=Cr_07205.1; organism=Cicer reticulatum; type=mRNA; length=5644bp; location=Sequence derived from: Cr_LG_3:33740001..33745644- (Cicer reticulatum
AATGGTCAAACATTACCGGTGGCGCCGGTCACCGGTCGATAAACCTCTCT
CTAAACTCCAAACTTATTTTCTTTTCCGGTCAATCTCTTATTGAGTCTTT
GAATTGTACGGAGGGGCTTGTTGGGTTCTCTCAGTTTCCATCTTTATGGT
CTCTGATCCAACCAAAAATCTCAACTTTCTTCAACAATTCAGCTCTACAA
TATTTGGGTAGTTGCCGTTTTCTCAAACAAATGACTACAGTCAGTTCCTT
CTCTTTTCTCTCTCCTCTTTCTCAATTATTGTTTGGCCTTGTTTTTGCCA
CGTTTTTTTGTGTCCTATTATGATGGATTTTAGTTTTTTTAGGAAAAAGG
TTTCAATCCCTTGCATTATTATGTTGTAATCTTTTGCTATGTTAAGTGCA
GCACCTTTTTTGTTTTTAACTTTTTTCCCTTTTCAAGCTCTTAATTTTTT
TCCTTCTTTCTGATGCTTGATATAGTTTACCTAAATTTTGATTCATTTTT
CGGTTTGGGAGTCTCAATATGCTATATTACTTTGCTGATATCCCAACCAT
AATTCAATTAGAATTATGGCCTTTGTGATTTTCTTAGTTTATGTGGAAAT
TAGCTTCATAAATTATTAGGTTTTTATATTAAGTCTAACTCATTCTTTCA
ATTTGCAAAACCAATTTGTAACGTGAGAGACACCAATCTTTATGAACTTT
GTTAAGATCTTATCTTTTTTTAATGTGAGACTTAAGTTTTTCTCAATATA
AATAAGTTTGTGCTCAAATTTTAACTTAGTCTTATGGAATGGATTTGCTT
GGTTTTCATGGATAGAAAATATGATATCCAAGATGTATGTGTATTAGCAT
TTTTAGAAAAAGAAGAATTCCTAAATATAATTTTTGGCTAGTGGAGCTGT
ATAAGCATGCTTTTATGTTCTATTCATATGTTTGACTAAAACTATAACTT
TCTTTGTGCTGGAAACTTGTTGCTATTTATACTGTTTGGTTTCTTCATTA
TGTGTGTGTGTGAATATTTACATTGGTAACAACTTTGCAACATGTGACAG
TGAAAAGATAATGATGCTATGTGTTAAGATACTGTATTTAATTTTTGGAT
ATTTTAGGGTTCAAATTAAAGTTCTTTTGTTATTTCTTTTAGAGGTACAG
AAGGGGAAAATATCTTCCCCGAGGCTGTTTCCATTTTCCATCAAAGTTTA
CTTGTATATGTCTGATACACTTTACGCAGATTAATTCACCTATATTTGTT
ATCACTTGCAATAATTTGTAACTTCAGTCGGTCTAATATATTCACGAGAG
ATGTCGAAGCAACTTTCAAGAACCCGTCTACAACAACTACATTAAGGTAG
ACAAAAAAGTCAACCAAAATAAAAGCTAAAGAATAATGATCTTTGAAGCA
CTAACATGGACACAAACACCAGACACTGACATAGACACCTAAGCACCAAT
AATAATTTAAGAAAATAGAAGTAGTTGAATGTAATCACATGTACCGATGG
TGTTTGGCATCAACACATATCAGACATTGGACACGTCTTAAATCTGACAT
GTCGATGGCGGAACTGGTGTCACAAGAGAGTAAACAAAAACTTAACACCA
GTAGATTATTTCTTTCTCTTTGTTGGCTTACAGTTATCTTACAATAATTA
GGATAATGTTGATATAACATGCTTTTAAAAATGAAAAAGGAAAAGAAAAT
AGGAGAAAAAGAGAGGTACCCACTTTTGGAGCAGTGCAACATATTGCATA
AGAATGGTATAAACACTAAGGGAGTCGGGGAAATTGAATTCTTTAATATG
GATTTTGTGATGAAAATTAATTTGAAACAAACAGATGCAGATTCGTGATG
AATCTACTATCTGCTATATTATAAATGTATTTGGTGTTTTAAAGGAAAAA
AGAAGAATGCTTTCCGAATTACAGACTAAAATATGACTTTGATCTTTTTG
CTCCCGATAAAATTACTGATTTTTTTCTTCGAACACTATAAATCTTGTGT
AAAATCAACTGATAACATACCGATTTTGATGGAGAACTTCACTAATTGGT
AAGATTTTCACTTTAGGTTTGTGATGATATATGACTCTGCCCATGGCAGG
ATTGATAAATATTGTCATTTATTGAAATTTAATCATATTAATGACGTTTC
AAAGCAAATCTTTGTTCTTGAGTGGTAACGAAGAACAATCTGGTTGTTGT
TTGAATGTTAATGGACTGAATATAATATAAAGAGTGACATATTTATTAAT
TAAAATGACACTATTACCATTTTTTAACTGTCCTTGAGAGGATTTGAATT
TCATCCTTTGAGATAATAAGGTTAAACTTTTACTTTTGAGTTGACACCTC
ATAGACATGAAATTTGTTAACTGTCGTAAAATGTTACATGCTTGTTGGTC
AATTGCAATAAGTTGTACCAAGAGACATCTTAGAATACCATTGTACTAGT
AAGTTGAAACAACATAAAATTCAGGTTTGTAAACTTAAAATTGCATGAAT
CTTTTAACTATGCGGTCATTTTTTGGATCAATTTGGCTGCAAGGGCTTAA
GTTTCCTATAACATAAAAATTTTATGTGATTCATGCAAGAATAGTTTTTA
AAATGGAATATACTAGAAAATAAAAATGGAAGAGACTTTTAGCCATGTCT
TTTTTTTTTCTTTCTGTAATAAGGCTTGATAGTAGTTATTGTTGTTGTTG
AGAATGGATTAAAAACCATTATTACATGCTATCTTTCATCTTTTGTGAAT
TCTAGAGGGAAATGGATGGTTTGAATTGAATATTGTATTTTGGTTATTAT
TTGCAGTGTTGAATTTTGCTTTGGTGATAAAATAGAATAATCGTTTAGAT
CAATCTTAGAAGAGTTGTAAATGTGTAAATGGAAGAAAAATACATCAATT
AATATAGTAAGTATTGAGAGATATCAAGATACCTTTTGGAGATTATATCT
TAGATTTCAATAGGAGTCTTCCTAGAAACCAAAAAGTATACATTTTTCAA
GTTGTCAAATTATTAATCAGGCATGCTCTATTTATCTTGGTTGTCAATAA
CTTTTGCAACTAACAAAGACCGAGGGCGAAGTAAAACATTATTTCTTGAA
ATATTGAAATATTGAAATATTGAATCATTGGTTTCTGGGTTGCATTGTTC
ATTGGCATGGACATTTGGAATAAGTAAATCAGAGGTTTTTCCTCCACCAT
CATTCCAACATTGTGAAATATGAAGCATTGACACGAACACATGACACAAC
ATTGACATGTCGACCCCAATAATTATTTGAGAAAATGAAAGTGATTGAAT
GTAACCACAAGTGACAGTGTTGGACACAGACACGTGTTGGACATCAGACA
TGCCTTCAATCTGAAGTGTTTGTGCTACATAGATTTTGAGTTCCTTGGTG
ATTTATTTTGATGGATTGGAAAGAAGTTAGATGGCAAAATTTTGTTTCAG
GAGCAATTCTTGCTGTAATATACTGTGCTGACTTACAAATACTAGAATTT
TGTTGCATTTTTTATATCATTTGCTTTTAGAGAATATAGTCCTCTGTACT
TTGCCAAAGTGCTCTTTGTTTGCTTCTTTCTTCATCTATGAGTATAATTT
TAATCAGAAATCTCTTAGAGAGACTTGAATTGAATATGATGGGATAATAA
ATCATCCACAGTCAGCACTTCTATCATATTACAAATTGAAATAGATACTA
CTTTATATGATTGGGTGGAACAATGTTGTCAAATAGAGACTATAGTGGTG
CTGCCTACAGCACTTTTGTGTAGCAGAATTTGAACTAATTGTTATTGTTC
TGCAGTATCCTATTTAGTACAAAGTCTTGCCAAATAGCGACTATAGCACT
GCTGCGTAGCAGAATTTGAATAATCTATTATTTTGACATCACCAAACAAT
ATCTTTTGTTTCCTTGCTCTGTTATATACCTATTATTAACTCTGATTCGG
TACAAGAAGCATGTTTGTTAGCATTTAAAACCTGTATCAGGGTCTATTTG
TCAAAACTATACTTATAGGATCTCTTCAATGTGTGTCAATTTAACAGCAA
CGTTCTCATGTTCCAAAGTTTGGCAATTGGGATGGCCAAGACGATGTTCC
TTATACAGCTTATTTTGACAAAGCCCGGAAAACTCGACCTGGCACCAAAA
TGATTAATCCAAATGACCCTGAAGAAAATTCAGATTTAGTTCTTCAAAAT
TCATCTTCTGATGCCGACATAATTCATCCAAAACCCAAAGTTTATTCAGA
GAATCAATCCGAAAAAGGATCAGTGAGATCAACACATAATGAGTTACAAA
AGAGCAAGGAGGATGGTGATCTTAAGAATTTTGTTAACTCACCAGCTCGT
CATGACAATCTAAGCAACAGGAGTGCTGGTGATTCCGCCTCTCGTCCTGG
AAGCCATGGAGTAGGTTCTGCTGACACCTACAGAAGACCTTTAAAACAAA
GTACTGGCTCAGAGTACAGCATTGAACGGTCACCCCTTCATCGCCAGGCT
AAAACCCCTGGTAGAGATAGTCCTTCTTGGGAAAGAAAAAGTTCATACGA
TAGCAGTCATGGTACACCAGGAAGATCCCGATTGAGACCAGCCAATCGAG
GGGATGAAACTGTTAGTTTTCTTTTCTGTTGTCTTGGTCTGTCATTTAAA
TAAAATTTTAAAATCATGAATATATATTGCATCAATGATTGTAATTATAT
TTTTGAGTTGATGCAAATGATTGTTATTGTTCTAAGGTGTGAACATAGTT
GGGATATCAGTTTAACATAATTATGTCTCTGCAATCCAATTTTCGCTTAA
AAATATATTTTATCAATGATTGCCAATTTTTAAGCATTAAGCATTTGACT
TTTGAATCTTTATGAAACTTCCCTTCACAAATGATTTGAGTTTTCTGTGT
TTTATGAATTTGATTTGGCAGCCTGATAAAAGTGCTGCTGTTCCGAAATT
TGGTGAGTGGGATGAGAGTGACCCTACATCAGCTGATGGCTATACTCACA
TTTTCAACAAAGTGCGGGAGGAGAAACACGTTGCAGCTGGAAATGCGCCA
GGTACACCAAATGGAAGATCATACGTTATCCGAAACCAACCTGCCAATGA
CAAAACTCAGGTATACCTACAACGGCTGCTTAAGATTAAGACAGTCGATA
AATTTCCATCATGTTGATGCTTCATTGCTTCTCTTTGTTCTCATAATTGC
TTTTTCAGGGTTGCTGCTTTTTCTGGGGCAGAAAATGATTATTGAAAGTG
CATTTATATTGTGAGCAGAAAAGAAGATAAGAATAGTGTTGTTAATGGTC
GTGAGGCATGTTGCCTCACCTATAATTTGACTCCTTTATTATGAGGGGTG
TACTTTCAAGGGTAAAGTGCGGAATTTTAACCGGTTGAGATTTTAACAAT
TTGATAGCTTGTTATTCATGTGCTTGTATTTTATTGCAGTCTAAACTGTT
GATCTTTCAATCAATGGTTTTAATCCACACTTTACTCTTCCAAGTGCACA
CTCCACTTTAGAGGATCTAAATTCTACTCTTTTATATGTATATATATTAA
AGGCTCTCTTTCCCCGAGGGAAAATGTCGTCAAAGTGCCTTTGTCTTGAA
TGTGTCCCACTTGTATCTTTCTTTCGTTTGACCAGTAAGCACGC

Coding sequence (CDS) from alignment at Cr_LG_3:33740001..33745644-

>Cr_07205.1_PI489777_v1 ID=Cr_07205.1_PI489777_v1; Name=Cr_07205.1; organism=Cicer reticulatum; type=CDS; length=792bp; location=Sequence derived from: Cr_LG_3:33740001..33745644- (Cicer reticulatum
ATGACTACACAACGTTCTCATGTTCCAAAGTTTGGCAATTGGGATGGCCA
AGACGATGTTCCTTATACAGCTTATTTTGACAAAGCCCGGAAAACTCGAC
CTGGCACCAAAATGATTAATCCAAATGACCCTGAAGAAAATTCAGATTTA
GTTCTTCAAAATTCATCTTCTGATGCCGACATAATTCATCCAAAACCCAA
AGTTTATTCAGAGAATCAATCCGAAAAAGGATCAGTGAGATCAACACATA
ATGAGTTACAAAAGAGCAAGGAGGATGGTGATCTTAAGAATTTTGTTAAC
TCACCAGCTCGTCATGACAATCTAAGCAACAGGAGTGCTGGTGATTCCGC
CTCTCGTCCTGGAAGCCATGGAGTAGGTTCTGCTGACACCTACAGAAGAC
CTTTAAAACAAAGTACTGGCTCAGAGTACAGCATTGAACGGTCACCCCTT
CATCGCCAGGCTAAAACCCCTGGTAGAGATAGTCCTTCTTGGGAAAGAAA
AAGTTCATACGATAGCAGTCATGGTACACCAGGAAGATCCCGATTGAGAC
CAGCCAATCGAGGGGATGAAACTCCTGATAAAAGTGCTGCTGTTCCGAAA
TTTGGTGAGTGGGATGAGAGTGACCCTACATCAGCTGATGGCTATACTCA
CATTTTCAACAAAGTGCGGGAGGAGAAACACGTTGCAGCTGGAAATGCGC
CAGGTACACCAAATGGAAGATCATACGTTATCCGAAACCAACCTGCCAAT
GACAAAACTCAGGGTTGCTGCTTTTTCTGGGGCAGAAAATGA

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR008700	TypeIII_avirulence_cleave
IPR040387	RIN4/NOI4

Search form

Cr_07205.1, Cr_07205.1_PI489777_v1 (mRNA) Cicer reticulatum