Transcript Overview
Name Cr_07205.1 Unique Name Cr_07205.1_PI489777_v1 Type mRNA Organism Cicer reticulatum (wild chickpea) Sequence length 5644
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks
Orthologs
Relationships
This mRNA is a part of the following gene feature(s):
The following three_prime_UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type
Cr_07205.1:utr3p1 Cr_07205.1:utr3p1_PI489777_v1 Cicer reticulatum three_prime_UTR
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type
Cr_07205.1:utr5p1 Cr_07205.1:utr5p1_PI489777_v1 Cicer reticulatum five_prime_UTR
The following polypeptide feature(s) derives from this mRNA:
Feature Name Unique Name Species Type
Cr_07205.1_PI489777_v1 Cr_07205.1_PI489777_v1 Cicer reticulatum polypeptide
Homology
BLAST of Cr_07205.1 vs. DB:Swiss
Match:
RIN4_ARATH (RPM1-interacting protein 4 OS=Arabidopsis thaliana OX=3702 GN=RIN4 PE=1 SV=1)
HSP 1 Score: 149.058 bits (375), Expect = 3.595e-43
Identity = 102/261 (39.08%), Postives = 142/261 (54.41%), Query Frame = 1
Query: 13 RSHVPKFGNWDGQDDVPYTAYFDKARKTR-PGTKMINPNDPEENSDLVLQNSSSDADIIHPKPKVYSENQSEKGSVRSTHNELQKSKEDGDLKNFVNSPARHDNLSNRSAGDSASRPGSHGVGSADTYRRPLKQSTGSEYSIERSPLHRQAKTPGRDSPSWERKSSYDSSHGTPGRSRLRPAN-RGDETPDKSAAVPKFGEWDESDPTSADGYTHIFNKVREEKHVAAGNAPGTPNGRSYVIRNQPANDKTQGCCFFWGRK 789
RS+VPKFGNW+ +++VPYTAYFDKARKTR PG+K++NPNDPE NSD Q P P + +VR + E +S+E+ +LK F ++ + +N+ G + S + Y +SPLH K+SYD + G+SR +P N R DE+P+K VPKFG+WDE++P+SADGYTHIFNKVREE+ A N G+ ++ P N+ + CCF +G K
Sbjct: 3 RSNVPKFGNWEAEENVPYTAYFDKARKTRAPGSKIMNPNDPEYNSDSQSQ--------APPHPPSSRTKPEQVDTVRRSR-EHMRSREESELKQFGDAGGSSNEAANKRQG---------------------RASQNNSYD-NKSPLH---------------KNSYDGT----GKSRPKPTNLRADESPEKVTVVPKFGDWDENNPSSADGYTHIFNKVREERSSGA-NVSGSSRTPTHQSSRNP-NNTSSCCCFGFGGK 211
BLAST of Cr_07205.1 vs. DB:Swiss
Match:
NOI4_ARATH (Protein NOI4 OS=Arabidopsis thaliana OX=3702 GN=NOI4 PE=1 SV=1)
HSP 1 Score: 55.4546 bits (132), Expect = 4.425e-9
Identity = 26/46 (56.52%), Postives = 32/46 (69.57%), Query Frame = 1
Query: 577 DKSAAVPKFGEWDESDPTSADGYTHIFNKVREEKHVAAGNAPGTPN 714
DK +PKFGEWD +DP SA+G+T IFNK R+EK G PG+P
Sbjct: 3 DKGRPLPKFGEWDVNDPASAEGFTVIFNKARDEKKT--GGKPGSPG 46
BLAST of Cr_07205.1 vs. DB:Swiss
Match:
NOIL_ELAOL (NOI-like protein OS=Elaeis oleifera OX=80265 PE=2 SV=1)
HSP 1 Score: 57.7658 bits (138), Expect = 1.098e-8
Identity = 34/103 (33.01%), Postives = 52/103 (50.49%), Query Frame = 1
Query: 10 QRSHVPKFGNWDGQDDVPYTAYFDKARKTR-PGTKMINPNDPEENSDLVLQNSSSDADIIHPKPKVYSENQSEKGSVRSTHNELQKSKEDGDLKNFVNSPARH 315
Q +HVPKFGNWDG +++ YT YF+ + + G+K+ NPNDPEEN + + H + + + S V H +ED + +V +P H
Sbjct: 3 QPAHVPKFGNWDG-ENISYTTYFETVHRDKGDGSKIFNPNDPEENPQAFYPRTVAQD---HQHSEKHHNDTSTDYHVVKQHRRKHHRREDREFHRYVEAPRPH 101
The following BLAST results are available for this feature:
BLAST of Cr_07205.1 vs. DB:Swiss
Analysis Date: 2019-05-21 (
BLAST: C. reticulatum PI489777 genome v1 Swissprot )
Total hits: 3
500 1000 1500 2000 2500 3000 3500 4000 4500 5000 5500 Expect = 3.60e-43 / Id = 39.08 Expect = 4.43e-9 / Id = 56.52 Expect = 1.10e-8 / Id = 33.01 Sequence RIN4_ARATH NOI4_ARATH NOIL_ELAOL
Match Name E-value Identity Description
RIN4_ARATH 3.595e-43 39.08 RPM1-interacting protein 4 OS=Arabidopsis thaliana... [more] NOI4_ARATH 4.425e-9 56.52 Protein NOI4 OS=Arabidopsis thaliana OX=3702 GN=NO... [more] NOIL_ELAOL 1.098e-8 33.01 NOI-like protein OS=Elaeis oleifera OX=80265 PE=2 ... [more]
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InterPro
Analysis Name: InterProScan: C. reticulatum PI489777 genome v1
Date Performed: 2019-05-28
500 1000 1500 2000 2500 3000 3500 4000 4500 5000 5500 Expect = 1.6E-21 / Score = 75.4 Score = Score = Score = Score = Score = Score = Score = Score = Score = Score = Sequence PF05627 mobidb-lite mobidb-lite mobidb-lite mobidb-lite mobidb-lite mobidb-lite mobidb-lite mobidb-lite PTHR33159:SF44 PTHR33159
IPR Term IPR Description Source Source Term Source Description Alignment
IPR008700 RIN4, pathogenic type III effector avirulence factor Avr cleavage site PFAM PF05627 AvrRpt-cleavage coord: 192..227 None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 102..117 None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 183..201 None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 148..167 None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 132..146 None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 1..213 None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 81..99 None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 228..247 None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 41..60 None No IPR available PANTHER PTHR33159:SF44 coord: 3..263 IPR040387 RPM1-interacting protein 4/NOI4 PANTHER PTHR33159 FAMILY NOT NAMED coord: 3..263
Sequences
The
following sequences are available for this feature:
mRNA sequence
>Cr_07205.1_PI489777_v1 ID=Cr_07205.1_PI489777_v1; Name=Cr_07205.1; organism=Cicer reticulatum; type=mRNA; length=5644bp back to top protein sequence of Cr_07205.1_PI489777_v1
>Cr_07205.1_PI489777_v1 ID=Cr_07205.1_PI489777_v1; Name=Cr_07205.1_PI489777_v1; organism=Cicer reticulatum; type=polypeptide; length=263bp back to top mRNA from alignment at Cr_LG_3:33740001..33745644-
Legend: exon five_prime_UTR CDS three_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Cr_07205.1_PI489777_v1 ID=Cr_07205.1_PI489777_v1; Name=Cr_07205.1; organism=Cicer reticulatum; type=mRNA; length=5644bp; location=Sequence derived from: Cr_LG_3:33740001..33745644- (Cicer reticulatumAATGGTCAAACATTACCGGTGGCGCCGGTCACCGGTCGATAAACCTCTCT
CTAAACTCCAAACTTATTTTCTTTTCCGGTCAATCTCTTATTGAGTCTTT
GAATTGTACGGAGGGGCTTGTTGGGTTCTCTCAGTTTCCATCTTTATGGT
CTCTGATCCAACCAAAAATCTCAACTTTCTTCAACAATTCAGCTCTACAA
TATTTGGGTAGTTGCCGTTTTCTCAAACAA ATGACTACA CAA
CGTTCTCATGTTCCAAAGTTTGGCAATTGGGATGGCCAAGACGATGTTCC
TTATACAGCTTATTTTGACAAAGCCCGGAAAACTCGACCTGGCACCAAAA
TGATTAATCCAAATGACCCTGAAGAAAATTCAGATTTAGTTCTTCAAAAT
TCATCTTCTGATGCCGACATAATTCATCCAAAACCCAAAGTTTATTCAGA
GAATCAATCCGAAAAAGGATCAGTGAGATCAACACATAATGAGTTACAAA
AGAGCAAGGAGGATGGTGATCTTAAGAATTTTGTTAACTCACCAGCTCGT
CATGACAATCTAAGCAACAGGAGTGCTGGTGATTCCGCCTCTCGTCCTGG
AAGCCATGGAGTAGGTTCTGCTGACACCTACAGAAGACCTTTAAAACAAA
GTACTGGCTCAGAGTACAGCATTGAACGGTCACCCCTTCATCGCCAGGCT
AAAACCCCTGGTAGAGATAGTCCTTCTTGGGAAAGAAAAAGTTCATACGA
TAGCAGTCATGGTACACCAGGAAGATCCCGATTGAGACCAGCCAATCGAG
GGGATGAAACT CCTGATAAAAGTGCTGCTGTTCCGAAATT
TGGTGAGTGGGATGAGAGTGACCCTACATCAGCTGATGGCTATACTCACA
TTTTCAACAAAGTGCGGGAGGAGAAACACGTTGCAGCTGGAAATGCGCCA
GGTACACCAAATGGAAGATCATACGTTATCCGAAACCAACCTGCCAATGA
CAAAACTCAG GGTTGCTGCTTTTTCTGGGGCAGAAAATGA TTATTGAAAGTG
CATTTATATTGTGAGCAGAAAAGAAGATAAGAATAGTGTTGTTAATGGTC
GTGAGGCATGTTGCCTCACCTATAATTTGACTCCTTTATTATGAGGGGTG
TACTTTCAAGGGTAAAGTGCGGAATTTTAACCGGTTGAGATTTTAACAAT
TTGATAGCTTGTTATTCATGTGCTTGTATTTTATTGCAGTCTAAACTGTT
GATCTTTCAATCAATGGTTTTAATCCACACTTTACTCTTCCAAGTGCACA
CTCCACTTTAGAGGATCTAAATTCTACTCTTTTATATGTATATATATTAA
AGGCTCTCTTTCCCCGAGGGAAAATGTCGTCAAAGTGCCTTTGTCTTGAA
TGTGTCCCACTTGTATCTTTCTTTCGTTTGACCAGTAAGCACGC back to top Coding sequence (CDS) from alignment at Cr_LG_3:33740001..33745644-
>Cr_07205.1_PI489777_v1 ID=Cr_07205.1_PI489777_v1; Name=Cr_07205.1; organism=Cicer reticulatum; type=CDS; length=792bp; location=Sequence derived from: Cr_LG_3:33740001..33745644- (Cicer reticulatum back to top
Annotated Terms
The
following terms have been associated with
this mRNA:
