Cr_19526.1, Cr_19526.1_PI489777_v1 (mRNA) Cicer reticulatum

Transcript Overview


Name	Cr_19526.1
Unique Name	Cr_19526.1_PI489777_v1
Type	mRNA
Organism	Cicer reticulatum (wild chickpea)
Sequence length	3989

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
Cr_LG_7	supercontig	Cr_LG_7:26649307..26653295 +	Cicer reticulatum L. PI489777 genome v1	n/a

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Cicer reticulatum L. PI489777 genome v1	2016-08-26
BLAST: C. reticulatum PI489777 genome v1 Swissprot	2019-05-21
InterProScan: C. reticulatum PI489777 genome v1	2019-05-28

Orthologs

Syntenic blocks


Syntentic block	Assembly	Species
crpsR713	Pisum sativum Cameor genome v1a	Pisum sativum
crpsR714	Pisum sativum Cameor genome v1a	Pisum sativum
crvuR795	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata
crvuR857	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata
crpvR838	Phaseolus vulgaris G19833 genome v2.1	Phaseolus vulgaris
crpvR904	Phaseolus vulgaris G19833 genome v2.1	Phaseolus vulgaris
cccrL0497	Cajanus cajan Asha genome v1.0	Cajanus cajan
ancrL0058	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
ancrL0059	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
ancrL0294	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
ancrL0415	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
ancrL0486	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
crzwsR749	Pisum sativum cv. Zhongwan6 genome v1.0	Pisum sativum
crzwsR781	Pisum sativum cv. Zhongwan6 genome v1.0	Pisum sativum
crtifR755	Vicia faba cv. Tiffany genome v1.0	Vicia faba
crtifR757	Vicia faba cv. Tiffany genome v1.0	Vicia faba
crvfhR768	Vicia faba inbred line Hedin/2 genome v1.0	Vicia faba
crvfhR771	Vicia faba inbred line Hedin/2 genome v1.0	Vicia faba
crvrvR719	Vigna radiata cv. VC1973A genome v6.0	Vigna radiata
crvrvR730	Vigna radiata cv. VC1973A genome v6.0	Vigna radiata
crvssR843	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
crvssR853	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
crvuaR790	Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0	Vigna unguiculata subsp. sesquipedalis
crvuaR833	Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0	Vigna unguiculata subsp. sesquipedalis
cancrL572	Cicer arietinum CDC Frontier NCBI RefSeq v1	Cicer arietinum
cancrL820	Cicer arietinum CDC Frontier NCBI RefSeq v1	Cicer arietinum

Orthologs


Gene/Transcript	Assembly	Species
rna-TanjilR_06998	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
Vfaba.Tiffany.R1.4g135520.1	Vicia faba cv. Tiffany genome v1.0	Vicia faba
Vigun03g359700.1	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata
rna-XM_022783791.1	Vigna radiata cv. VC1973A genome v6.0	Vigna radiata
Psat4g038960.1	Pisum sativum Cameor genome v1a	Pisum sativum
rna-KK1_033507	Cajanus cajan Asha genome v1.0	Cajanus cajan
Psat04G0126800-T1	Pisum sativum cv. Zhongwan6 genome v1.0	Pisum sativum
Vfaba.Hedin2.R1.4g178520.1	Vicia faba inbred line Hedin/2 genome v1.0	Vicia faba
Phvul.003G168700.1	Phaseolus vulgaris G19833 genome v2.1	Phaseolus vulgaris
evm.model.Chr03.1829.2.6211317b	Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0	Vigna unguiculata subsp. sesquipedalis

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Cr_19526	Cr_19526_PI489777_v1	Cicer reticulatum	gene

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
Cr_19526.1:utr5p1	Cr_19526.1:utr5p1_PI489777_v1	Cicer reticulatum	five_prime_UTR
Cr_19526.1:utr5p2	Cr_19526.1:utr5p2_PI489777_v1	Cicer reticulatum	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
Cr_19526.1:exon1	Cr_19526.1:exon1_PI489777_v1	Cicer reticulatum	exon
Cr_19526.1:exon2	Cr_19526.1:exon2_PI489777_v1	Cicer reticulatum	exon
Cr_19526.1:exon3	Cr_19526.1:exon3_PI489777_v1	Cicer reticulatum	exon
Cr_19526.1:exon4	Cr_19526.1:exon4_PI489777_v1	Cicer reticulatum	exon
Cr_19526.1:exon5	Cr_19526.1:exon5_PI489777_v1	Cicer reticulatum	exon
Cr_19526.1:exon6	Cr_19526.1:exon6_PI489777_v1	Cicer reticulatum	exon
Cr_19526.1:exon7	Cr_19526.1:exon7_PI489777_v1	Cicer reticulatum	exon
Cr_19526.1:exon8	Cr_19526.1:exon8_PI489777_v1	Cicer reticulatum	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
Cr_19526.1:cds1	Cr_19526.1:cds1_PI489777_v1	Cicer reticulatum	CDS
Cr_19526.1:cds2	Cr_19526.1:cds2_PI489777_v1	Cicer reticulatum	CDS
Cr_19526.1:cds3	Cr_19526.1:cds3_PI489777_v1	Cicer reticulatum	CDS
Cr_19526.1:cds4	Cr_19526.1:cds4_PI489777_v1	Cicer reticulatum	CDS
Cr_19526.1:cds5	Cr_19526.1:cds5_PI489777_v1	Cicer reticulatum	CDS
Cr_19526.1:cds6	Cr_19526.1:cds6_PI489777_v1	Cicer reticulatum	CDS
Cr_19526.1:cds7	Cr_19526.1:cds7_PI489777_v1	Cicer reticulatum	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
Cr_19526.1_PI489777_v1	Cr_19526.1_PI489777_v1	Cicer reticulatum	polypeptide

Homology

The following BLAST results are available for this feature:

BLAST of Cr_19526.1 vs. DB:Swiss

BLAST of Cr_19526.1 vs. DB:Swiss
Analysis Date: 2019-05-21 (BLAST: C. reticulatum PI489777 genome v1 Swissprot)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterProScan: C. reticulatum PI489777 genome v1
Date Performed: 2019-05-28

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 138..158
None	No IPR available	PANTHER	PTHR15131:SF3	SNRNA-ACTIVATING PROTEIN COMPLEX SUBUNIT 1	coord: 2..254
IPR019188	Small nuclear RNA activating complex (SNAPc), subunit SNAP43	PFAM	PF09808	SNAPc_SNAP43	coord: 6..201 e-value: 7.6E-51 score: 172.8
IPR019188	Small nuclear RNA activating complex (SNAPc), subunit SNAP43	PANTHER	PTHR15131	SMALL NUCLEAR RNA ACTIVATING COMPLEX, POLYPEPTIDE 1	coord: 2..254

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at Cr_LG_7:26649307..26653295+
coding sequence from alignment at Cr_LG_7:26649307..26653295+

mRNA sequence

>Cr_19526.1_PI489777_v1 ID=Cr_19526.1_PI489777_v1; Name=Cr_19526.1; organism=Cicer reticulatum; type=mRNA; length=3989bp
ATCTCTTCCTTTTCACCTGAAACGAACACACTCTAACTGTAAAGAAAATA
ATTCCAAGAACCAACAGTATACCATCAAAATTTGAGAAAATAGCAGAAAA
TTTGAGAGACAGAGAGAATAAGAGGAAGCCACCGCCGGCCGCCGCAAGAC
CGTCCAATTCTCTGCTGCCGTGCGAGCTACGTATCTCCGCGCCGTCGCCT
TCCATTCTATCGGTTTCCCATGCTGCTGTTGTGGAGCTTCAGCGTACTAT
TACTTCCTAGTTGCATAGATACTTCTTCACAAGGTGCCAACCGCTGTTGC
ACATAACCTGTTTGATTATATCCCCCCTATCATAACTTCAATTTTTCTGT
TTCAAATTTGCCAATTCCTTTGCTTGTGAATTGTGATTGCATTGATGGAC
AATTTCTCATTATCGTGATCAAGGTTCAGGATGCATGCATGCATGGTCTA
ATCATACTAACTAACCCTTAATGCTGTATGTTTAGCTACATGAAAATTAT
AAACAAAATCTTGTTTTTATTAGTTATCAAACCTGTCTGAGGATTCGCAA
TTTATTCCTGTTTAATTAATATTCATGTTCTGGTTGAATTTGAAGGTTTA
TATATGTAGTTTGTATCTTTTGATGATGCAAGTTTTGACCTTGTTTGAAT
ACTTTCCGGTACATATTTCTCAGGTGCAAATTAGGGTTAGTGACCATGAG
TATTGATTATTTCAAGCAGGACATTGATGAACTTATAGCTCAATTCATTC
AGGTATTGTTAAAAGAATTTAATTTAATTTATATATATATATCGTCGGTA
TAAAGAGTTTTTACACTGACTATCAATCACAGCCATTAGATCATTAATAA
TGTTTGACTTTTGCCATAACTACTTATAAAGTCACTCACATGATTGGTGA
TGATTGTCCGTCTGTGAAAAACTTTTTATATTGACAGTGTATACAAATTA
AACTCTTGTTAAAATCTATTGCCACTGCTTTCCTCATTGTGTTGGTTTCT
TTGTAAGTACAACAAGCTTGTTCCTAGGGCCACGTGGTTTTTTTTTTTTT
TTTTTTTTTTCAAAGGGATGGGATTGGAAAATGTGAAAGAAGATTAGGGC
TTGTGAGAGCAGGTTCTGATCTTGAAAGTTTGAAAGGAGACTCGTTTGGT
TGATTTGGTGAAGCTATTTTAAAAACTGGTTAACTAGATCACAATTTTCA
AAACAAACCAGTTTGGTTCAAGAACTCATTTATTTTATTTTTCACTAAAG
GTGTGTTCCAGTTAGGTTTGATTGAAAACCATTTTTCGGACAGCTTACTT
GTTTCCTATTTTTTGATTATTAACAATCAATTTTACTGTACAATTTTGTT
GAGTGACAGGATGAGTCAAAAACTTTGGCTGATATGAAGAGAATATGGAT
TTCTAAGAAGTTTTCCTTCATTTATGAAGCATGTCCTTCTACCAACTTGG
CCTTCTTTATGCAATCTTTGTATGCTCATTGTATAGGTACATTTTTACCT
GGTATATGCAGTTCTGATCTTAACTATCTTTATATCTAAAAATGGTATAT
GCAGGCTTGAGTTCCAATTTTTTTGCAGATAATCTGGGTGTTGAATGGAT
TTATTCTGTGCTGAAAAGTATTTATATAATTAAAAGGCAATGAAGCAAAC
ATAATTAAAATTCATAATGCACTTAACTACTAGTGAAATTTCAGCAGTGT
TTGATAATTCTGTTATATTGTATAACGGTTTTACTTTTAGCCTTTATCTT
TTATTTCAATGTAGAAACTCCTTCATACTTCTATGCAGGTTACATGGTTA
GCACTGGTTCTTTGTCACACAGATTGGGTGGCCTTTATTGCCTCTACTGT
CTTTACGAGACTCAACCATTCAAGCCTCCTTTTAAGGTGTATATATCCCT
TGGTATGACACTTTTTTACTTGAAAGTTGAAACCTAGCCATGTTTAATTA
TATAGTTAGGCCATTTGAAATCACATTTTATATTTCATATTCTATGTAGC
TTGTAGAAACCGTTTGGGCAGTGTATCATTGAACTGTTACTGTAGTTTCG
TAAGTGATATACAATTGTGCTTTTGGAAGGAATGAATTATCTTATTTTCT
CATAACATAAGCTTTAATTATCTTTTTGTTTTGACTCATTTGAGGTTTAG
AGGGCTAAACATGCATCTTTCTGTTTTCTGTTTGTGTGGTTTCATAGGTT
TACTAATTTATTTGTGATTTAGTATTTGCAATCAAAGTGTTGCATTTATG
TATTTAACATCATGTTTACTTCTTTCAATGGCTATGTTCATCATATTGAA
TCTTAGTTATTTCATTCAAAAGAATACGGTATTCAAACTGCGACAAATTT
CATTTGATTGATAATTAGTTACTGAGAATTAAGGAGGGTAAAAATTTCAT
TTGATTGATAATTAGTTACTGAGAAATTGATATTATTTAATATGAAAACT
TTGAATATATGTCATAACATGAAGATTTTGTGGTTTTATGAGAATGAAAT
GATTCTGCGAGTTTCAACAATTAAGATGCAAATATGCATGTTTCTACAGG
AGAGTTAAAGAATCTTAGAATCCTTGTTGTTGATGCAAAGGCAAATGATA
TTGGAGTGGTGCCTGTGCTAGTCAAAAGAATGCTGGAAAGAAACATGTTC
CTTTTTGGAGCTGTTGACTTAATGGAAAGTTCTGTCACAGAAACAGTAAA
TCAACTCCAACAATTACAGAATGCTCGTATTCAAGTTGCATATGAAAAGT
AAATCACCATATTGAACTTGTTTTCAATGTCCTTCCTTCCTTTTTATGTT
GTCCTGATAGTGTTTTAACCCATCAACTTATTTGTTTGGATGTATCCCCC
TGTGGATGACAGGTTATTTGAAAGCACTCCAATTGAAAACTATGTCCGCA
TGGACCTTGTAAGTTTCCTGGTGCTTTGTGACTTGCAAATTAATTTAATC
ATTAATCTTTTCCATCCATGATATTATACAGTCAGCTTAATATTAGGAGA
ATGGGACAAAAACAGTAGTCAGTATTACCATTTATGGGAGTGTTTGAATA
AATAGCTTAATTGAGCGCTATTCAATAATAACTTGTTATATGAGAGCTTG
ATGGGGGGGGGTGGGGGGTGGAGATGAAGGTTTATTTGGTACTAAATGAA
CTTGATGGGTATTTTTATTTTTACTTAACTTCCTTACTCCTTTCCACATA
CTAGGGAATGGAAGTTGATCTCAATTTGCTGAAGAAAATGTCAGCTGAAT
ATGCTGAGGCCAAGAATGTAGCTATTAAAGGTATTTATTCCTTTTTTATT
CTGTATCACTTGAGTAAGCAAAATTTTCTATATGTTGAAGTGTTTTCTTT
TTGTGAAGCCAAGTCTGTGTTTTCCCTGTCATCCATAAAGGCTACACACT
TACAATAAATTTATTTTGCCTTCTCCCTGCGAAACTCCTTTATGTCAATT
CATGCAAGACATTCACTACAAATGAATGACACTATGTTAGTGAAATGAAT
GACACAGTGCGTATTTTGAACGTCCTTTTAGTTTGTTTGAAGAATGACAC
AACTAAAGTTCATTGAGGTTCATGGTTCTCCAAATTGAGTTGATGCTATT
TTTTCCTCTTTAATATATGACAATATCTTAAATTTAATTTTAATCTCTTA
CATTTGGAACTCCCGACCTTGTCTTTGGGGCCTATTTTGAATGTTCTAGC
TAGTTGTTACAGTTTGACCATTGTCTAAATCAATTGGCATTCCTTGTCAT
TTTTTCTTCTTCTTAAAGAAGCGAGCGGTATATTGGATGTCCAAAATATA
AAACACATATCAGAAGACAAGGAACTGATAGGAGATGTTGTGGAGAAGAT
TGCTGATGATTGGCATGTCCAGAAACAAACATTTTATAAACAAACAGGAT
TGGGGGAGGATGATAGATATGATCTGGAGCTGGAGCAATTACTTCTACAG
CAGTTTGCAGATGATGATGATGAGCATAATCAAGACTGA

protein sequence of Cr_19526.1_PI489777_v1

>Cr_19526.1_PI489777_v1 ID=Cr_19526.1_PI489777_v1; Name=Cr_19526.1_PI489777_v1; organism=Cicer reticulatum; type=polypeptide; length=279bp
MSIDYFKQDIDELIAQFIQDESKTLADMKRIWISKKFSFIYEACPSTNLA
FFMQSLYAHCIGYMVSTGSLSHRLGGLYCLYCLYETQPFKPPFKVYISLG
ELKNLRILVVDAKANDIGVVPVLVKRMLERNMFLFGAVDLMESSVTETVN
QLQQLQNARIQVAYEKLFESTPIENYVRMDLGMEVDLNLLKKMSAEYAEA
KNVAIKEASGILDVQNIKHISEDKELIGDVVEKIADDWHVQKQTFYKQTG
LGEDDRYDLELEQLLLQQFADDDDEHNQD

mRNA from alignment at Cr_LG_7:26649307..26653295+

Legend: five_prime_UTRexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>Cr_19526.1_PI489777_v1 ID=Cr_19526.1_PI489777_v1; Name=Cr_19526.1; organism=Cicer reticulatum; type=mRNA; length=3989bp; location=Sequence derived from: Cr_LG_7:26649307..26653295+ (Cicer reticulatum
ATCTCTTCCTTTTCACCTGAAACGAACACACTCTAACTGTAAAGAAAATA
ATTCCAAGAACCAACAGTATACCATCAAAATTTGAGAAAATAGCAGAAAA
TTTGAGAGACAGAGAGAATAAGAGGAAGCCACCGCCGGCCGCCGCAAGAC
CGTCCAATTCTCTGCTGCCGTGCGAGCTACGTATCTCCGCGCCGTCGCCT
TCCATTCTATCGGTTTCCCATGCTGCTGTTGTGGAGCTTCAGCGTACTAT
TACTTCCTAGTTGCATAGATACTTCTTCACAAGGTGCCAACCGCTGTTGC
ACATAACCTGTTTGATTATATCCCCCCTATCATAACTTCAATTTTTCTGT
TTCAAATTTGCCAATTCCTTTGCTTGTGAATTGTGATTGCATTGATGGAC
AATTTCTCATTATCGTGATCAAGGTTCAGGATGCATGCATGCATGGTCTA
ATCATACTAACTAACCCTTAATGCTGTATGTTTAGCTACATGAAAATTAT
AAACAAAATCTTGTTTTTATTAGTTATCAAACCTGTCTGAGGATTCGCAA
TTTATTCCTGTTTAATTAATATTCATGTTCTGGTTGAATTTGAAGGTTTA
TATATGTAGTTTGTATCTTTTGATGATGCAAGTTTTGACCTTGTTTGAAT
ACTTTCCGGTACATATTTCTCAGGTGCAAATTAGGGTTAGTGACCATGAG
TATTGATTATTTCAAGCAGGACATTGATGAACTTATAGCTCAATTCATTC
AGGTATTGTTAAAAGAATTTAATTTAATTTATATATATATATCGTCGGTA
TAAAGAGTTTTTACACTGACTATCAATCACAGCCATTAGATCATTAATAA
TGTTTGACTTTTGCCATAACTACTTATAAAGTCACTCACATGATTGGTGA
TGATTGTCCGTCTGTGAAAAACTTTTTATATTGACAGTGTATACAAATTA
AACTCTTGTTAAAATCTATTGCCACTGCTTTCCTCATTGTGTTGGTTTCT
TTGTAAGTACAACAAGCTTGTTCCTAGGGCCACGTGGTTTTTTTTTTTTT
TTTTTTTTTTCAAAGGGATGGGATTGGAAAATGTGAAAGAAGATTAGGGC
TTGTGAGAGCAGGTTCTGATCTTGAAAGTTTGAAAGGAGACTCGTTTGGT
TGATTTGGTGAAGCTATTTTAAAAACTGGTTAACTAGATCACAATTTTCA
AAACAAACCAGTTTGGTTCAAGAACTCATTTATTTTATTTTTCACTAAAG
GTGTGTTCCAGTTAGGTTTGATTGAAAACCATTTTTCGGACAGCTTACTT
GTTTCCTATTTTTTGATTATTAACAATCAATTTTACTGTACAATTTTGTT
GAGTGACAGGATGAGTCAAAAACTTTGGCTGATATGAAGAGAATATGGAT
TTCTAAGAAGTTTTCCTTCATTTATGAAGCATGTCCTTCTACCAACTTGG
CCTTCTTTATGCAATCTTTGTATGCTCATTGTATAGGTACATTTTTACCT
GGTATATGCAGTTCTGATCTTAACTATCTTTATATCTAAAAATGGTATAT
GCAGGCTTGAGTTCCAATTTTTTTGCAGATAATCTGGGTGTTGAATGGAT
TTATTCTGTGCTGAAAAGTATTTATATAATTAAAAGGCAATGAAGCAAAC
ATAATTAAAATTCATAATGCACTTAACTACTAGTGAAATTTCAGCAGTGT
TTGATAATTCTGTTATATTGTATAACGGTTTTACTTTTAGCCTTTATCTT
TTATTTCAATGTAGAAACTCCTTCATACTTCTATGCAGGTTACATGGTTA
GCACTGGTTCTTTGTCACACAGATTGGGTGGCCTTTATTGCCTCTACTGT
CTTTACGAGACTCAACCATTCAAGCCTCCTTTTAAGGTGTATATATCCCT
TGGTATGACACTTTTTTACTTGAAAGTTGAAACCTAGCCATGTTTAATTA
TATAGTTAGGCCATTTGAAATCACATTTTATATTTCATATTCTATGTAGC
TTGTAGAAACCGTTTGGGCAGTGTATCATTGAACTGTTACTGTAGTTTCG
TAAGTGATATACAATTGTGCTTTTGGAAGGAATGAATTATCTTATTTTCT
CATAACATAAGCTTTAATTATCTTTTTGTTTTGACTCATTTGAGGTTTAG
AGGGCTAAACATGCATCTTTCTGTTTTCTGTTTGTGTGGTTTCATAGGTT
TACTAATTTATTTGTGATTTAGTATTTGCAATCAAAGTGTTGCATTTATG
TATTTAACATCATGTTTACTTCTTTCAATGGCTATGTTCATCATATTGAA
TCTTAGTTATTTCATTCAAAAGAATACGGTATTCAAACTGCGACAAATTT
CATTTGATTGATAATTAGTTACTGAGAATTAAGGAGGGTAAAAATTTCAT
TTGATTGATAATTAGTTACTGAGAAATTGATATTATTTAATATGAAAACT
TTGAATATATGTCATAACATGAAGATTTTGTGGTTTTATGAGAATGAAAT
GATTCTGCGAGTTTCAACAATTAAGATGCAAATATGCATGTTTCTACAGG
AGAGTTAAAGAATCTTAGAATCCTTGTTGTTGATGCAAAGGCAAATGATA
TTGGAGTGGTGCCTGTGCTAGTCAAAAGAATGCTGGAAAGAAACATGTTC
CTTTTTGGAGCTGTTGACTTAATGGAAAGTTCTGTCACAGAAACAGTAAA
TCAACTCCAACAATTACAGAATGCTCGTATTCAAGTTGCATATGAAAAGT
AAATCACCATATTGAACTTGTTTTCAATGTCCTTCCTTCCTTTTTATGTT
GTCCTGATAGTGTTTTAACCCATCAACTTATTTGTTTGGATGTATCCCCC
TGTGGATGACAGGTTATTTGAAAGCACTCCAATTGAAAACTATGTCCGCA
TGGACCTTGTAAGTTTCCTGGTGCTTTGTGACTTGCAAATTAATTTAATC
ATTAATCTTTTCCATCCATGATATTATACAGTCAGCTTAATATTAGGAGA
ATGGGACAAAAACAGTAGTCAGTATTACCATTTATGGGAGTGTTTGAATA
AATAGCTTAATTGAGCGCTATTCAATAATAACTTGTTATATGAGAGCTTG
ATGGGGGGGGGTGGGGGGTGGAGATGAAGGTTTATTTGGTACTAAATGAA
CTTGATGGGTATTTTTATTTTTACTTAACTTCCTTACTCCTTTCCACATA
CTAGGGAATGGAAGTTGATCTCAATTTGCTGAAGAAAATGTCAGCTGAAT
ATGCTGAGGCCAAGAATGTAGCTATTAAAGGTATTTATTCCTTTTTTATT
CTGTATCACTTGAGTAAGCAAAATTTTCTATATGTTGAAGTGTTTTCTTT
TTGTGAAGCCAAGTCTGTGTTTTCCCTGTCATCCATAAAGGCTACACACT
TACAATAAATTTATTTTGCCTTCTCCCTGCGAAACTCCTTTATGTCAATT
CATGCAAGACATTCACTACAAATGAATGACACTATGTTAGTGAAATGAAT
GACACAGTGCGTATTTTGAACGTCCTTTTAGTTTGTTTGAAGAATGACAC
AACTAAAGTTCATTGAGGTTCATGGTTCTCCAAATTGAGTTGATGCTATT
TTTTCCTCTTTAATATATGACAATATCTTAAATTTAATTTTAATCTCTTA
CATTTGGAACTCCCGACCTTGTCTTTGGGGCCTATTTTGAATGTTCTAGC
TAGTTGTTACAGTTTGACCATTGTCTAAATCAATTGGCATTCCTTGTCAT
TTTTTCTTCTTCTTAAAGAAGCGAGCGGTATATTGGATGTCCAAAATATA
AAACACATATCAGAAGACAAGGAACTGATAGGAGATGTTGTGGAGAAGAT
TGCTGATGATTGGCATGTCCAGAAACAAACATTTTATAAACAAACAGGAT
TGGGGGAGGATGATAGATATGATCTGGAGCTGGAGCAATTACTTCTACAG
CAGTTTGCAGATGATGATGATGAGCATAATCAAGACTGA

Coding sequence (CDS) from alignment at Cr_LG_7:26649307..26653295+

>Cr_19526.1_PI489777_v1 ID=Cr_19526.1_PI489777_v1; Name=Cr_19526.1; organism=Cicer reticulatum; type=CDS; length=840bp; location=Sequence derived from: Cr_LG_7:26649307..26653295+ (Cicer reticulatum
ATGAGTATTGATTATTTCAAGCAGGACATTGATGAACTTATAGCTCAATT
CATTCAGGATGAGTCAAAAACTTTGGCTGATATGAAGAGAATATGGATTT
CTAAGAAGTTTTCCTTCATTTATGAAGCATGTCCTTCTACCAACTTGGCC
TTCTTTATGCAATCTTTGTATGCTCATTGTATAGGTTACATGGTTAGCAC
TGGTTCTTTGTCACACAGATTGGGTGGCCTTTATTGCCTCTACTGTCTTT
ACGAGACTCAACCATTCAAGCCTCCTTTTAAGGTGTATATATCCCTTGGA
GAGTTAAAGAATCTTAGAATCCTTGTTGTTGATGCAAAGGCAAATGATAT
TGGAGTGGTGCCTGTGCTAGTCAAAAGAATGCTGGAAAGAAACATGTTCC
TTTTTGGAGCTGTTGACTTAATGGAAAGTTCTGTCACAGAAACAGTAAAT
CAACTCCAACAATTACAGAATGCTCGTATTCAAGTTGCATATGAAAAGTT
ATTTGAAAGCACTCCAATTGAAAACTATGTCCGCATGGACCTTGGAATGG
AAGTTGATCTCAATTTGCTGAAGAAAATGTCAGCTGAATATGCTGAGGCC
AAGAATGTAGCTATTAAAGAAGCGAGCGGTATATTGGATGTCCAAAATAT
AAAACACATATCAGAAGACAAGGAACTGATAGGAGATGTTGTGGAGAAGA
TTGCTGATGATTGGCATGTCCAGAAACAAACATTTTATAAACAAACAGGA
TTGGGGGAGGATGATAGATATGATCTGGAGCTGGAGCAATTACTTCTACA
GCAGTTTGCAGATGATGATGATGAGCATAATCAAGACTGA

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR019188	SNAPC1

Search form

Cr_19526.1, Cr_19526.1_PI489777_v1 (mRNA) Cicer reticulatum