Vigna angularis cv. Jingnong6 genome v1.7.1

Genome Overview
Analysis NameVigna angularis cv. Jingnong6 genome v1.7.1
MethodPacBio Sequel, BGI DNBSEQ (Assembled with CANU 1.7.1, BWA-EM 0.7.17, PILON 1.22)
SourceCNA0139807
Date performed2024-05-08

The genome of Jingnong6 was sequenced and assembled as outlined in Chu L, Yang K, Chen C, Zhao B, Hou Y, Wang W, Zhao P, Wang K, Wang B, Xiao Y, Li Y, Li Y, Song Q, Liu B, Fan R, Bohra A, Yu J, Sonnenschein EC, Varshney RK, Tian Z, Jian J, Wan P. Chromosome-level reference genome and resequencing of 322 accessions reveal evolution, genomic imprint and key agronomic traits in adzuki bean. Plant biotechnology journal. 2024 Mar 18.

About the assembly:

Number of scaffolds 346
Total size  489 Mb
N50 43,272,725 bp
Assembly BUSCO score (embryophyta_odb10) 98.3%
Annotation BUSCO score (embryophyta_odb10) 84.3%
Functional Analysis

Functional annotation files for the Vigna angularis cv. Jingnong6 genome v1.7.1 are available for download below. The V. angularis cv. Jingnong6 genome v1.7.1 proteins were analyzed using InterProScan in order to assign InterPro domains and Gene Ontology (GO) terms. Pathways analysis was performed using the KEGG Automatic Annotation Server (KAAS).

Downloads

GO assignments from InterProScan Vangularis_Jingnong6_v1.7.1_genes2GO.xlsx.gz
IPR assignments from InterProScan Vangularis_Jingnong6_v1.7.1_genes2IPR.xlsx.gz
Proteins mapped to KEGG Orthologs Vangularis_Jingnong6_v1.7.1_KEGG-orthologis.xlsx.gz
Proteins mapped to KEGG Pathways Vangularis_Jingnong6_v1.7.1_KEGG-pathways.xlsx.gz
Assembly

The Vigna angularis cv. Jingnong6 genome v1.7.1 assembly files are available in GFF3 and FASTA format.

Downloads

Chromosomes and scaffolds (FASTA file) V.angularis_Jingnong6.v1.7.1.fasta.gz
Gene Prediction

The Vigna angularis cv. Jingnong6 genome v1.7.1 gene prediction files are available in GFF3 and FASTA format.

Downloads

Protein sequences  (FASTA file) V.angularis_Jingnong6.v1.7.1.proteins.fasta.gz
CDS  (FASTA file) V.angularis_Jingnong6.v1.7.1.cds.fasta.gz
Genes (GFF3 file) V.angularis_Jingnong6.v1.7.1.genes.gff3.gz
Homology

Homology of the Vigna angularis cv. Jingnong6 genome v1.7.1 proteins was determined by pairwise sequence comparison using the blastp algorithm against various protein databases. An expectation value cutoff less than 1e-6  for the Arabidoposis proteins (Araport11, 2022-09), UniProtKB/SwissProt (Release 2023-07), and UniProtKB/TrEMBL (Release 2023-07) databases. The best hit reports are available for download in Excel format. 

Protein Homologs

V. angularis cv. Jingnong6 genome v1.7.1 proteins with arabidopsis (Araport11) homologs (EXCEL file) Vangularis_Jingnong6_v1.7.1_vs_tair.xlsx.gz
V. angularis cv. Jingnong6 genome v1.7.1 proteins with arabidopsis (Araport11) (FASTA file) Vangularis_Jingnong6_v1.7.1_vs_tair_hit.fasta.gz
V. angularis cv. Jingnong6 genome v1.7.1 proteins without arabidopsis (Araport11) (FASTA file) Vangularis_Jingnong6_v1.7.1_vs_tair_noHit.fasta.gz
V. angularis cv. Jingnong6 genome v1.7.1 proteins with SwissProt homologs (EXCEL file) Vangularis_Jingnong6_v1.7.1_vs_swissprot.xlsx.gz
V. angularis cv. Jingnong6 genome v1.7.1 proteins with SwissProt (FASTA file) Vangularis_Jingnong6_v1.7.1_vs_swissprot_hit.fasta.gz
V. angularis cv. Jingnong6 genome v1.7.1 proteins without SwissProt (FASTA file) Vangularis_Jingnong6_v1.7.1_vs_swissprot_noHit.fasta.gz
V. angularis cv. Jingnong6 genome v1.7.1 proteins with TrEMBL homologs (EXCEL file) Vangularis_Jingnong6_v1.7.1_vs_trembl.xlsx.gz
V. angularis cv. Jingnong6 genome v1.7.1 proteins with TrEMBL (FASTA file) Vangularis_Jingnong6_v1.7.1_vs_trembl_hit.fasta.gz
V. angularis cv. Jingnong6 genome v1.7.1 proteins without TrEMBL (FASTA file) Vangularis_Jingnong6_v1.7.1_vs_trembl_noHit.fasta.gz