Cicer_arietinum_v1_Contig1549

Contig Overview


Name	Cicer_arietinum_v1_Contig1549
Unique Name	Cicer_arietinum_v1_Contig1549
Type	contig
Organism	Cicer arietinum (chickpea)
Sequence length	660

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
GR402935	EST	GR402935:1..261 +
AJ006050	EST	AJ006050:1..397 -
GR400227	EST	GR400227:26..397 +
GR405306	EST	GR405306:1..578 +
GR404932	EST	GR404932:406..614 -
ES560386	EST	ES560386:474..662 +

Unigenes

This contig is part of the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
Cicer arietinum unigene v1	Cicer arietinum unigene v1	contig

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Cicer arietinum unigene v1	2010-12-27
Homology Analysis: Cicer arietinum unigene v1 vs Trembl	2010-12-28
InterProScan analysis for Cicer arietinum unigene v1	2010-12-29

Relationships

The following EST feature(s) are a part of this contig:


Feature Name	Unique Name	Species	Type
GR402935	GR402935	Cicer arietinum	EST
AJ006050	AJ006050	Cicer arietinum	EST
GR400227	GR400227	Cicer arietinum	EST
GR405306	GR405306	Cicer arietinum	EST
GR404932	GR404932	Cicer arietinum	EST
ES560386	ES560386	Cicer arietinum	EST

Homology

[Close]

BLAST of Cicer_arietinum_v1_Contig1549 vs. TrEMBL
Match: C6SVN4_SOYBN (Putative uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.025e-15
Identity = 41/75 (54.67%), Postives = 46/75 (61.33%), Query Frame = -1

Query:  433 SEDCLINNXXXXXXXXXXSHVARMLYEGSQSQTGKTANNNAASVKCPTNQGYRSCLPTATGGTPNYRCATYTRGC 657
            +EDCLI N          SHVARMLY+ SQS +GKT N N  +V CP  QGYRSCLP+  GG P   C  YTR C
Sbjct:   30 TEDCLIGNKDLESEFYFGSHVARMLYDVSQSVSGKTGNKNNKAVNCPNKQGYRSCLPSKNGGGPKQSCGDYTRVC 104

[Close]

BLAST of Cicer_arietinum_v1_Contig1549 vs. TrEMBL
Match: C6T4V1_SOYBN (Putative uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.345e-14
Identity = 40/75 (53.33%), Postives = 48/75 (64.00%), Query Frame = -1

Query:  433 SEDCLINNXXXXXXXXXXSHVARMLYEGSQSQTGKTANNNAASVKCPTNQGYRSCLPTATGGTPNYRCATYTRGC 657
            +EDCLI +           HVARMLY+ SQS +G+T N+N A V CP + GYRSCLP+  GG PN RC  YTR C
Sbjct:   31 TEDCLIGDNFESEFSFGS-HVARMLYDVSQSVSGQTGNSNNAVVNCPQSNGYRSCLPSQNGGGPNQRCGDYTRTC 104

[Close]

BLAST of Cicer_arietinum_v1_Contig1549 vs. TrEMBL
Match: C6T279_SOYBN (Putative uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.830e-13
Identity = 38/75 (50.67%), Postives = 47/75 (62.67%), Query Frame = -1

Query:  433 SEDCLINNXXXXXXXXXXSHVARMLYEGSQSQTGKTANNNAASVKCPTNQGYRSCLPTATGGTPNYRCATYTRGC 657
            +EDCLI +           HVARMLY+ SQS +G+T N+N A+V CP + GYRSCL +  GG PN  C  YTR C
Sbjct:   30 TEDCLIGHSLESEFSFGS-HVARMLYDVSQSVSGQTGNSNNAAVNCPESNGYRSCLSSQNGGGPNQNCGDYTRTC 103

The following BLAST results are available for this feature:

BLAST of Cicer_arietinum_v1_Contig1549 vs. TrEMBL

BLAST of Cicer_arietinum_v1_Contig1549 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Trembl)
Total hits: 3


Match Name	E-value	Identity	Description
C6SVN4_SOYBN	3.025e-15	54.67	Putative uncharacterized protein OS=Glycine max PE...	[more]
C6T4V1_SOYBN	3.345e-14	53.33	Putative uncharacterized protein OS=Glycine max PE...	[more]
C6T279_SOYBN	4.830e-13	50.67	Putative uncharacterized protein OS=Glycine max PE...	[more]

InterPro

Analysis Name: InterProScan analysis for Cicer arietinum unigene v1
Date Performed: 2010-12-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	SEG	seg	seg	coord: 14..31 score
None	No IPR available	SEG	seg	seg	coord: 10..20 score
None	No IPR available	SEG	seg	seg	coord: 8..30 score
None	No IPR available	SEG	seg	seg	coord: 8..26 score: NAcoord: 32..53 score: NAcoord: 60..72 score

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>Cicer_arietinum_v1_Contig1549 ID=Cicer_arietinum_v1_Contig1549; Name=Cicer_arietinum_v1_Contig1549; organism=Cicer arietinum; type=contig; length=660bp
GACATAAAGGGTTGAATCATGTTCTCACAAGCATTTCCATCTCACATGGA
GAATTTATTCGTAACAACAAAAATTTACATATAACAATTAACATAAAATA
TTAAATTACTAATAATTATTACATCTTGAGATACAAATTTCAATACAATT
CAATGATCAAACTTCTCTTAAAGTCGAATCAACCAGAAGTATCGAATTTA
AACCTTGACCGAAACAATCATTGATCAAAATTTATTTACCACTCGATCAA
ACTCCAGATTGACGAGACCCTTTCCATTTGAATTTGAAGGCTTAAGACAG
TTTTTTTTTCCAATACAATCATATTTAAACACAAATGAAAACTTGTCCAA
AAGATTATTGCAATATATAGATATATTAAAATGAAAACAAAAATGAAAAA
AAAGAAAGAAACAAAAGATTGATTTTTTATTTGCAACCTCTAGTGTAAGT
AGCACATCTATAGTTAGGAGTACCACCAGTTGCAGTAGGCAAGCAACTAC
GATAGCCTTGATTTGTAGGACACTTAACAGAAGCAGCATTGTTATTAGCA
GTTTTACCAGTTTGACTTTGACTCCCCTCATAAAGCATTCTTGCTACATG
AGAACTAAAAGAAAACTCTTCTGAATCAAAATCATTGTTGATTAAACAAT
CTTCTGAGGT

Search form

Cicer_arietinum_v1_Contig1549